ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart17c10 |
|---|---|
| Clone Library Name | barley_pub |
>HOX1A_MAIZE (P46605) Homeobox protein HOX1A| Length = 719 Score = 38.9 bits (89), Expect = 0.009 Identities = 20/57 (35%), Positives = 33/57 (57%) Frame = +2 Query: 350 RGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPLRSAHSSPRVLRST 520 RG+KGSQ + Y S++S RVLRSTS K+ + +P++ A ++ R++ Sbjct: 57 RGKKGSQGLTGQAYTLMSSNSDVRVLRSTSSSKTTSTEHVQAPVQPAAKRRKMSRAS 113
>SFRS8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Suppressor of white| apricot protein homolog) Length = 951 Score = 34.3 bits (77), Expect = 0.21 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Frame = +2 Query: 176 RKQFNKAYPKSPRTGLSVP---AEKVGRRSSFIWTKHLLLVLFRRIKKVGNDSSSPPTKG 346 +++ K + K RT P + R S KH L +R +++ + S SP + Sbjct: 754 KEKKKKKHKKRSRTRSRSPKYHSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRA 813 Query: 347 ---KRGRKGSQIT----------ASKKYLR-RSAHSSARVLRSTSKDKSKTPNEPVSPLR 484 +R R+ + AS+K R RS H + RS S+ KSK ++ VSP + Sbjct: 814 HSPERRREERSVPTAYRVSRSPGASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSK 873 Query: 485 SAHSSP 502 A P Sbjct: 874 QAAPRP 879
>YJY1_SCHPO (Q9USN8) Hypothetical protein C132.01c in chromosome III| Length = 1021 Score = 32.3 bits (72), Expect = 0.81 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = +2 Query: 317 NDSSSPPTKG--------KRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 451 N+ S+P T G KRG+KGS++ +KK + + R R T+ ++S Sbjct: 751 NNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEES 803
>TWST2_RAT (P97831) Twist-related protein 2| Length = 160 Score = 32.3 bits (72), Expect = 0.81 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = +2 Query: 200 PKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKVGNDSSSPPTKGKRGRKGSQITA 379 P SP L E++ R+ K R KK D S PT GKRG+KGS Sbjct: 8 PVSPVDSLGTSEEELERQPKRFGRKR------RYSKKSSEDGS--PTPGKRGKKGSPSAQ 59 Query: 380 SKKYLRRSAHSSARVLRST-SKDKSKTPNEPVSPLR 484 S + L+ S R+L + + ++++ NE + LR Sbjct: 60 SFEELQ-----SQRILANVRERQRTQSLNEAFAALR 90
>TWST2_MOUSE (Q9D030) Twist-related protein 2 (Dermis expressed protein 1)| (Dermo-1) Length = 160 Score = 32.3 bits (72), Expect = 0.81 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = +2 Query: 200 PKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKVGNDSSSPPTKGKRGRKGSQITA 379 P SP L E++ R+ K R KK D S PT GKRG+KGS Sbjct: 8 PVSPVDSLGTSEEELERQPKRFGRKR------RYSKKSSEDGS--PTPGKRGKKGSPSAQ 59 Query: 380 SKKYLRRSAHSSARVLRST-SKDKSKTPNEPVSPLR 484 S + L+ S R+L + + ++++ NE + LR Sbjct: 60 SFEELQ-----SQRILANVRERQRTQSLNEAFAALR 90
>TWST2_HUMAN (Q8WVJ9) Twist-related protein 2 (Dermis expressed protein 1)| (Dermo-1) Length = 160 Score = 32.3 bits (72), Expect = 0.81 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = +2 Query: 200 PKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKVGNDSSSPPTKGKRGRKGSQITA 379 P SP L E++ R+ K R KK D S PT GKRG+KGS Sbjct: 8 PVSPVDSLGTSEEELERQPKRFGRKR------RYSKKSSEDGS--PTPGKRGKKGSPSAQ 59 Query: 380 SKKYLRRSAHSSARVLRST-SKDKSKTPNEPVSPLR 484 S + L+ S R+L + + ++++ NE + LR Sbjct: 60 SFEELQ-----SQRILANVRERQRTQSLNEAFAALR 90
>PGLRX_COCCA (Q00359) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)| (Galacturan 1,4-alpha-galacturonidase) (Poly(1,4-alpha-D-galacturonide)galacturonohydrolase) Length = 446 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -1 Query: 253 PPTDLLCGN**ASPG-RLRVSLVELLSGGEDDPVNLFRSIEMCRGLAAASAPRAWRF 86 PP L G + PG R + +++ L GG+DD N+ +++ C P+ +F Sbjct: 36 PPVPFLPGKASSVPGSRNKTCMLKALGGGKDDSANILSAVKQCNNGGHVVFPKGQQF 92
>MSH6_YEAST (Q03834) MutS protein homolog 6| Length = 1242 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Frame = +2 Query: 365 SQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEP-VSPLRS---AHSSP 502 ++ T+ KK+ ++HSS+ R+ S+D SK + P +P RS +HS P Sbjct: 211 AETTSKKKFSYNTSHSSSPFTRNISRDNSKKKSRPNQAPSRSYNPSHSQP 260
>VE2_HPV38 (Q80910) Regulatory protein E2| Length = 441 Score = 31.2 bits (69), Expect = 1.8 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = +2 Query: 305 KKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKD--KSKTPNEPVSP 478 ++ G +SSP T +R RKG + T + RR + S +R +D +S + VSP Sbjct: 235 RRYGRKASSPSTTSRRQRKGQRETTGTQ-RRRKSRSRSRSTNRGGRDTRRSSSRGSSVSP 293 Query: 479 LR 484 R Sbjct: 294 TR 295
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Frame = +2 Query: 323 SSSPPTKGKRGRKGSQITASK------KYLRRSAHSSARVLRSTSKDK-SKTPNEPVSPL 481 S SPP + +R K + S+ + R + S +V RS S + S++P+E SP Sbjct: 238 SRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPPRGSRSPSEKGSPR 297 Query: 482 RSAHSSP 502 RS +SP Sbjct: 298 RSRSASP 304
>YR871_MIMIV (Q5UP41) Hypothetical protein R871| Length = 561 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 317 NDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 451 N SSS RGR + +SKK+ H S++ +S+ +DKS Sbjct: 122 NKSSSKDKSPSRGRSPKRHKSSKKHKSSKKHKSSKHDKSSKRDKS 166
>Y1273_HAEIN (P44150) Hypothetical protein HI1273| Length = 268 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = -2 Query: 411 LCADLR-RYFLLAVIWDPFLP--LFPLVGGDDESFPTFFILLNK 289 LCA + R FL +V FL +F +G +D FPT+ LLN+ Sbjct: 147 LCAKAKKRVFLTSVTQRHFLDEGVFEAIGREDIGFPTYIYLLNR 190
>LRC52_HUMAN (Q8N7C0) Leucine-rich repeat-containing protein 52 precursor| Length = 313 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = -1 Query: 469 WLIRCLTLVF*SRAKNPGTTMCRSPEILFTCCNLGPFPSPFPLGRRR 329 WL+ + S +K P +C++ E++ T L +P PL RR Sbjct: 11 WLLFSFGMGLVSGSKCPNNCLCQAQEVICTGKQLTEYPLDIPLNTRR 57
>VE2_HPV09 (P36780) Regulatory protein E2| Length = 461 Score = 29.3 bits (64), Expect = 6.9 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +2 Query: 296 RRIKKVGNDSSSPPTKGKRGRKGSQ--ITASKKYLRRSAHSSARVLRSTSKDKSKTPNEP 469 RR + + S+ PT +RGR G + T S+ R +HS +R T+ +P+E Sbjct: 294 RRRGRSSSADSTTPTDRRRGRGGGRGPTTRSQSRSRSRSHSRSRSRGGTASRVGVSPDEV 353 Query: 470 VSPLRS 487 + +RS Sbjct: 354 GTRVRS 359
>FMT_ENTFA (Q82ZD8) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 313 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 499 TTMSGSQWTYWLIRCLTLVF*SRAKNPGTTMCRSPEILFTCCNLG 365 TT G+ W W + LT + PGT + RS + L+ C G Sbjct: 236 TTYQGTNWKIWAVTPLTE---TTTSAPGTIIQRSKKALWIACGEG 277
>VE2_HPV5B (P26545) Regulatory protein E2| Length = 514 Score = 28.9 bits (63), Expect = 9.0 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Frame = +2 Query: 323 SSSPPTKGKRGRKGSQITASKKYLRRSAHSSA-------RVLRSTSKDKSKTPNEPVSPL 481 + SP T+G RG +GS+ + LRR SS+ R ++K + +P E L Sbjct: 351 AESPTTRGARGSRGSRGGSRGGRLRRRGRSSSSSSPAHKRSRGGSAKLRGVSPGEVGGSL 410 Query: 482 RSAHS 496 RS S Sbjct: 411 RSVSS 415
>COA2_POVJC (P03095) Coat protein VP2 [Contains: Coat protein VP3]| Length = 343 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +2 Query: 224 SVPAEKVGRRSSFIWTKHLLLVLFRRIKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRS 403 S+ +RS+ W LLL L+ + P K KR ++G + ++ Y RRS Sbjct: 279 SIAPGGANQRSAPQWMLPLLLGLYGTVTPALEAYEDGPNKKKRRKEGPRASSKTSYKRRS 338 Query: 404 AHS 412 S Sbjct: 339 RSS 341
>ECM32_YEAST (P32644) Putative ATP-dependent RNA helicase ECM32 (EC 3.6.1.-)| (Extracellular matrix protein 32) (Helicase 1) (scHelI) (DNA helicase B) (DNA helicase III) (Hcs B) (Modulator of translation termination protein 1) Length = 1121 Score = 28.9 bits (63), Expect = 9.0 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Frame = +2 Query: 188 NKAYPKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKVGNDSSSPPTKG------- 346 +K PKS R V +EK GR L ++ + + N + P KG Sbjct: 125 DKCLPKSNRAKDFV-SEKSGR----------FLYIYLGLNETQNSTRKPRKKGGRRVGRG 173 Query: 347 KRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPLRS 487 K+GRKG++I KK + S R+ K+ S + S LR+ Sbjct: 174 KKGRKGAKIKKEKKETFEAKIS--RIAYEVKKENSTIQSSSSSNLRN 218
>YBL7_YEAST (P38213) Protein YBR007C| Length = 736 Score = 28.9 bits (63), Expect = 9.0 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = +2 Query: 317 NDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPLRSAHS 496 ND S PPT + K S K L +S R+ +K+K +E SP+RSA + Sbjct: 350 NDISLPPTPPYKAHKKKTSLNSLKKLFKSP-------RTRAKNKKDLESEGSSPIRSATN 402 Query: 497 S 499 S Sbjct: 403 S 403 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,526,725 Number of Sequences: 219361 Number of extensions: 1833655 Number of successful extensions: 4737 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4728 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
