ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart17c07 |
|---|---|
| Clone Library Name | barley_pub |
>DR206_PEA (P13240) Disease resistance response protein 206| Length = 184 Score = 62.4 bits (150), Expect = 7e-10 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 8/133 (6%) Frame = +1 Query: 139 YWHDVL-----AGTSPTAIRIAQ---AASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSK 294 Y+HD+L A + +AI A + + + + FG ++ DDP+T ++ S Sbjct: 37 YFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSL-----SS 91 Query: 295 DEIGRAQGTYTFADQATFGLLMNMNFVFTAGDYKGSGLTIYGRNEVLSAVREMSIVGGTG 474 ++GRAQG Y + + T+ ++ FV + ++G+ +T G + +++ R++S+ GGTG Sbjct: 92 KQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGT-ITFAGADPIVAKTRDISVTGGTG 150 Query: 475 KFRMARGYVEART 513 F M RG T Sbjct: 151 DFFMHRGIATITT 163
>UL49_EHV1B (P28960) Tegument protein (Gene 11 protein)| Length = 304 Score = 32.3 bits (72), Expect = 0.81 Identities = 21/53 (39%), Positives = 23/53 (43%) Frame = +3 Query: 30 STSHGRQQGSAPPPPVRGGAADPGLRGGRRPDQVQAVLARRAGGDEPDRDPDC 188 STS+GRQ + PP RG AA P R RP R A R DC Sbjct: 112 STSNGRQSPAKAQPPPRGAAAAPPPRVPTRPP------TRAAATSTTPRQQDC 158
>DIA_DROME (P48608) Protein diaphanous| Length = 1091 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 7/47 (14%) Frame = +3 Query: 63 PPPPVRGGAAD-------PGLRGGRRPDQVQAVLARRAGGDEPDRDP 182 PPPP GG A PG GG P + RAGG P P Sbjct: 514 PPPPPGGGGAPPPPPPPMPGRAGGGPPPPPPPPMPGRAGGPPPPPPP 560
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/55 (34%), Positives = 22/55 (40%) Frame = +3 Query: 18 C*ARSTSHGRQQGSAPPPPVRGGAADPGLRGGRRPDQVQAVLARRAGGDEPDRDP 182 C RS+ G +GSA PP R G P + AV A G EP P Sbjct: 1662 CSQRSSPDGGLKGSAEGPPKRPGG----------PSPLNAVPGESASGSEPSEPP 1706
>INHA_BOVIN (P07994) Inhibin alpha chain precursor| Length = 360 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 19/55 (34%) Frame = +3 Query: 66 PPPVRGGAADPG-------------LRGGRRP---DQVQAVLARRAG---GDEPD 173 PPPV G DPG +R G P D QA+L AG GDEPD Sbjct: 42 PPPVTGEGGDPGVRRLHRRHAVGGFMRRGSEPEDQDVSQAILFPAAGASCGDEPD 96
>DCHS_MOUSE (P23738) Histidine decarboxylase (EC 4.1.1.22) (HDC)| Length = 662 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +3 Query: 63 PPPPVRGGAADPGLRGGRRPDQVQ-------AVLARRAGGDEPDRDPD 185 PPP RG + + GG P Q + A LARR GG + + PD Sbjct: 500 PPPGTRGLSLESVSEGGDDPAQARKIIKQPGASLARREGGSDLETMPD 547
>KIF12_HUMAN (Q96FN5) Kinesin-like protein KIF12| Length = 646 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = +3 Query: 57 SAPPPPVRGGAADPGLRGG 113 SAPP PVR PGLRGG Sbjct: 584 SAPPLPVRPPKTSPGLRGG 602
>YEEJ_ECOLI (P76347) Hypothetical protein yeeJ| Length = 2358 Score = 29.3 bits (64), Expect = 6.9 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 160 GTSPTAIRIAQAAS-TNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYTFAD 336 G + T+++ A S T S+ T G + +D L GPA T + K +G YT D Sbjct: 2020 GIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADTSQSVLKSNRSSLKGDYT--D 2077 Query: 337 QATFGLLMN 363 A L+++ Sbjct: 2078 SAELRLVLH 2086
>SOXA_CORS1 (Q46337) Sarcosine oxidase alpha subunit (EC 1.5.3.1) (Sarcosine| oxidase subunit) Length = 967 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -3 Query: 498 VAARHAELAGAPDDAHLPHRRQHLVAAVDGEAAALVVPGGEDEVHVHEEAEGGLVRERVG 319 + A AELA A + HL +R ++ + D A VV VH+ + G+ RER+ Sbjct: 186 IDATVAELAAAEETTHL--QRTTVLGSYD---ANYVVAVQRRTVHLDGPSGAGVSRERIW 240 Query: 318 PLRAANLVL 292 +RA +VL Sbjct: 241 HIRANQVVL 249
>PHNC_STAAW (Q7A1Z1) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 257 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 148 DVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYT 327 D L+G I IA+A S VA DPLTT + K E+G Sbjct: 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELG------- 198 Query: 328 FADQATFGLLMNMNFVFTAGDY 393 +L+N++FV A +Y Sbjct: 199 ------ITILINLHFVDLAKEY 214
>PHNC_STAAS (Q6GCY2) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 257 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 148 DVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYT 327 D L+G I IA+A S VA DPLTT + K E+G Sbjct: 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELG------- 198 Query: 328 FADQATFGLLMNMNFVFTAGDY 393 +L+N++FV A +Y Sbjct: 199 ------ITILINLHFVDLAKEY 214
>PHNC_STAAR (Q6GKG3) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 257 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 148 DVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYT 327 D L+G I IA+A S VA DPLTT + K E+G Sbjct: 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELG------- 198 Query: 328 FADQATFGLLMNMNFVFTAGDY 393 +L+N++FV A +Y Sbjct: 199 ------ITILINLHFVDLAKEY 214
>PHNC_STAAN (Q7A848) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 257 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 148 DVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYT 327 D L+G I IA+A S VA DPLTT + K E+G Sbjct: 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELG------- 198 Query: 328 FADQATFGLLMNMNFVFTAGDY 393 +L+N++FV A +Y Sbjct: 199 ------ITILINLHFVDLAKEY 214
>PHNC_STAAM (Q99X73) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 257 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 148 DVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYT 327 D L+G I IA+A S VA DPLTT + K E+G Sbjct: 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELG------- 198 Query: 328 FADQATFGLLMNMNFVFTAGDY 393 +L+N++FV A +Y Sbjct: 199 ------ITILINLHFVDLAKEY 214
>PHNC_STAAC (Q5HJM6) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 257 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 148 DVLAGTSPTAIRIAQAASTNSSSTFFGAVVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYT 327 D L+G I IA+A S VA DPLTT + K E+G Sbjct: 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELG------- 198 Query: 328 FADQATFGLLMNMNFVFTAGDY 393 +L+N++FV A +Y Sbjct: 199 ------ITILINLHFVDLAKEY 214
>AMYC_THETU (P37729) Probable starch degradation products transport system| permease protein amyC Length = 274 Score = 28.9 bits (63), Expect = 9.0 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 Query: 115 DGLTKFKLYWHDVLAGTSPTAIRIA 189 DG ++F++YW+ +L +PT I +A Sbjct: 173 DGCSRFRIYWNIILPLLNPTTITLA 197
>APT_THETN (Q8RAL9) Adenine phosphoribosyltransferase (EC 2.4.2.7) (APRT)| Length = 173 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 232 VVAIDDPLTTGPAVTGSAKSKDEIGRAQGTYTFADQATF 348 VV +DD L TG V SAK + +G + F + TF Sbjct: 117 VVIVDDLLATGGTVYASAKLVESLGGVVDSILFLTELTF 155
>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000| Length = 395 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 14/56 (25%) Frame = +3 Query: 54 GSAPPPPVRGGAADP--------------GLRGGRRPDQVQAVLARRAGGDEPDRD 179 GSAPPPP GG+A P + G R P A GG P ++ Sbjct: 259 GSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNNMGGPRPPQN 314
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 54 GSAPPPPVRGGAADPGLRGGRRP 122 G+A P +RGGA PG GG+ P Sbjct: 686 GTAGTPGLRGGAGPPGPEGGKGP 708 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,499,437 Number of Sequences: 219361 Number of extensions: 817804 Number of successful extensions: 4484 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4440 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
