Clone Information

BLAST Search Result

Clone Name	bart17c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473036.1\| Oryza sativa (japonica cultivar-group), predic...	90	9e-15
2	dbj\|AK109382.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	9e-15
3	dbj\|AK069136.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	9e-15
4	gb\|AY904340.1\| Hordeum vulgare subsp. vulgare 2-alkenal reductas...	82	2e-12
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	70	9e-09
6	emb\|AL606627.3\|OSJN00052 Oryza sativa genomic DNA, chromosome 4,...	70	9e-09
7	ref\|NM_190224.1\| Oryza sativa (japonica cultivar-group), predic...	64	5e-07
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	5e-07
9	dbj\|AP003407.3\| Oryza sativa (japonica cultivar-group) genomic D...	64	5e-07
10	dbj\|AK099151.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	5e-07
11	dbj\|AK063674.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	5e-07
12	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
13	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.002
14	emb\|AL731740.4\|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb...	52	0.002
15	ref\|XM_364089.1\| Magnaporthe grisea 70-15 hypothetical protein (...	46	0.12
16	gb\|CP000150.1\| Burkholderia sp. 383 chromosome 3, complete sequence	44	0.49
17	ref\|NM_184568.1\| Oryza sativa (japonica cultivar-group), predic...	44	0.49
18	gb\|CP000125.1\| Burkholderia pseudomallei 1710b chromosome II, co...	44	0.49
19	emb\|BX640444.1\| Bordetella bronchiseptica strain RB50, complete ...	44	0.49
20	emb\|BX640427.1\| Bordetella parapertussis strain 12822, complete ...	44	0.49
21	emb\|BX640414.1\| Bordetella pertussis strain Tohama I, complete g...	44	0.49
22	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	44	0.49
23	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	44	0.49
24	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	44	0.49
25	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	44	0.49
26	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	44	0.49
27	emb\|CR555308.1\| Azoarcus sp. EbN1 plasmid 2	42	1.9
28	emb\|BX294152.1\| Pirellula sp. strain 1 complete genome; segment ...	42	1.9
29	emb\|AL939129.1\|SCO939129 Streptomyces coelicolor A3(2) complete ...	42	1.9
30	emb\|AL939127.1\|SCO939127 Streptomyces coelicolor A3(2) complete ...	42	1.9
31	gb\|AE005875.1\| Caulobacter crescentus CB15 section 201 of 359 of...	42	1.9
32	gb\|AE017282.2\| Methylococcus capsulatus str. Bath, complete genome	42	1.9
33	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	42	1.9
34	ref\|XM_465723.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.7
35	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	40	7.7
36	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	40	7.7
37	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	7.7
38	emb\|AL590111.14\| Human DNA sequence from clone RP11-570F3 on chr...	40	7.7
39	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	40	7.7
40	emb\|X60350.1\|MTGROEOP M.tuberculosis groE gene for KCS and 10-kD...	40	7.7
41	emb\|BX950851.1\| Erwinia carotovora subsp. atroseptica SCRI1043, ...	40	7.7
42	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	7.7
43	emb\|AL939124.1\|SCO939124 Streptomyces coelicolor A3(2) complete ...	40	7.7
44	emb\|AL939122.1\|SCO939122 Streptomyces coelicolor A3(2) complete ...	40	7.7
45	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	7.7
46	gb\|AE017340.1\| Idiomarina loihiensis L2TR, complete genome	40	7.7
47	gb\|AY661558.1\| Hordeum vulgare subsp. vulgare eIF4E gene locus, ...	40	7.7
48	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
49	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	7.7
50	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	7.7
51	dbj\|AP004837.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
52	dbj\|AP005322.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
53	gb\|AE005081.1\| Halobacterium sp. NRC-1 section 112 of 170 of the...	40	7.7
54	dbj\|AK111178.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.7
55	dbj\|AK070393.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.7
56	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	7.7
57	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	40	7.7
58	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	7.7
59	gb\|AC152181.1\| Mus musculus BAC clone RP24-321P19 from 15, compl...	40	7.7
60	gb\|L43074.1\|STMFABD Streptomyces glaucescens fabD, fabH, fabC, f...	40	7.7

>ref|XM_473036.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                       
Query: 429 tgccgctgtcctactacaccggcgtcctcggcatgccgggcctcacggcgtacgtggggt 488
           ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct: 380 tgccgctctcctactacaccggcctcctcggcatggcgggcttcacggcgtacgtcgggt 439

                
Query: 489 tccac 493
           |||||
Sbjct: 440 tccac 444



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 329 gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 383
           |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 286 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 340



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 179 aagaacctctacctctcctgcgacccctacatgcgc 214
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 139 aagaacctgtacctgtcctgcgacccctacatgcgc 174

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>dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F02, full
           insert sequence
          Length = 1343

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                       
Query: 429 tgccgctgtcctactacaccggcgtcctcggcatgccgggcctcacggcgtacgtggggt 488
           ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct: 488 tgccgctctcctactacaccggcctcctcggcatggcgggcttcacggcgtacgtcgggt 547

                
Query: 489 tccac 493
           |||||
Sbjct: 548 tccac 552



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 329 gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 383
           |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 394 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 448



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 179 aagaacctctacctctcctgcgacccctacatgcgc 214
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 247 aagaacctgtacctgtcctgcgacccctacatgcgc 282

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>dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008C06, full
           insert sequence
          Length = 1269

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                       
Query: 429 tgccgctgtcctactacaccggcgtcctcggcatgccgggcctcacggcgtacgtggggt 488
           ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct: 426 tgccgctctcctactacaccggcctcctcggcatggcgggcttcacggcgtacgtcgggt 485

                
Query: 489 tccac 493
           |||||
Sbjct: 486 tccac 490



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 329 gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 383
           |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 332 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 386



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 179 aagaacctctacctctcctgcgacccctacatgcgc 214
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 185 aagaacctgtacctgtcctgcgacccctacatgcgc 220

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>gb|AY904340.1| Hordeum vulgare subsp. vulgare 2-alkenal reductase (ALH) gene,
           complete cds
          Length = 1864

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 174 tggtcaagaacctctacctctcctgcgacccctacatgcgc 214
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tggtcaagaacctctacctctcctgcgacccctacatgcgc 180

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 329      gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 383
                |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 24834370 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 24834316



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 179      aagaacctctacctctcctgcgacccctacatgcgc 214
                |||||||| ||||| |||||||||||||||||||||
Sbjct: 24834649 aagaacctgtacctgtcctgcgacccctacatgcgc 24834614



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 458      ggcatgccgggcctcacggcgtacgtggggttccac 493
                |||||| ||||| ||||||||||||| |||||||||
Sbjct: 24834162 ggcatggcgggcttcacggcgtacgtcgggttccac 24834127



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 429      tgccgctgtcctactacaccggcgtcctcgg 459
                ||||||| ||||||||||||||| |||||||
Sbjct: 24834276 tgccgctctcctactacaccggcctcctcgg 24834246

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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
             complete sequence
          Length = 170765

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                    
Query: 329   gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 383
             |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 96086 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 96032



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 179   aagaacctctacctctcctgcgacccctacatgcgc 214
             |||||||| ||||| |||||||||||||||||||||
Sbjct: 96365 aagaacctgtacctgtcctgcgacccctacatgcgc 96330



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 458   ggcatgccgggcctcacggcgtacgtggggttccac 493
             |||||| ||||| ||||||||||||| |||||||||
Sbjct: 95878 ggcatggcgggcttcacggcgtacgtcgggttccac 95843



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 429   tgccgctgtcctactacaccggcgtcctcgg 459
             ||||||| ||||||||||||||| |||||||
Sbjct: 95992 tgccgctctcctactacaccggcctcctcgg 95962

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>ref|NM_190224.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 179 aagaacctctacctctcctgcgacccctacatgcgc 214
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 166 aagaatctctacctctcctgcgacccctacatgcgc 201

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                    
Query: 179      aagaacctctacctctcctgcgacccctacatgcgc 214
                ||||| ||||||||||||||||||||||||||||||
Sbjct: 38746105 aagaatctctacctctcctgcgacccctacatgcgc 38746140

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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1078G07
          Length = 199457

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 179   aagaacctctacctctcctgcgacccctacatgcgc 214
             ||||| ||||||||||||||||||||||||||||||
Sbjct: 18987 aagaatctctacctctcctgcgacccctacatgcgc 19022

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>dbj|AK099151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064D04, full
           insert sequence
          Length = 1166

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 179 aagaacctctacctctcctgcgacccctacatgcgc 214
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 199 aagaatctctacctctcctgcgacccctacatgcgc 234

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>dbj|AK063674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D10, full
           insert sequence
          Length = 1232

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 179 aagaacctctacctctcctgcgacccctacatgcgc 214
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 232 aagaatctctacctctcctgcgacccctacatgcgc 267

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 168     cggtgctggtcaagaacctctacctctcctgcgacccctacatgcg 213
               ||||| ||||||||||||| ||  |||| |||||||||||||||||
Sbjct: 6931808 cggtggtggtcaagaacctgtatatctcatgcgacccctacatgcg 6931853



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      gcggcggcgatcgatggcgg 59
               ||||||||||||||||||||
Sbjct: 6910312 gcggcggcgatcgatggcgg 6910331

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 168     cggtgctggtcaagaacctctacctctcctgcgacccctacatgcg 213
               ||||| ||||||||||||| ||  |||| |||||||||||||||||
Sbjct: 6931687 cggtggtggtcaagaacctgtatatctcatgcgacccctacatgcg 6931732



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      gcggcggcgatcgatggcgg 59
               ||||||||||||||||||||
Sbjct: 6910191 gcggcggcgatcgatggcgg 6910210

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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 168   cggtgctggtcaagaacctctacctctcctgcgacccctacatgcg 213
             ||||| ||||||||||||| ||  |||| |||||||||||||||||
Sbjct: 30230 cggtggtggtcaagaacctgtatatctcatgcgacccctacatgcg 30185



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    gcggcggcgatcgatggcgg 59
             ||||||||||||||||||||
Sbjct: 51726 gcggcggcgatcgatggcgg 51707

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>ref|XM_364089.1| Magnaporthe grisea 70-15 hypothetical protein (MG08934.4) partial
           mRNA
          Length = 4269

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 449 ggcgtcctcggcatgccgggcct 471
           |||||||||||||||||||||||
Sbjct: 409 ggcgtcctcggcatgccgggcct 431



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 543 ccggcgccgtcggccagctcgtcgg 567
           ||||||||||||||||| |||||||
Sbjct: 503 ccggcgccgtcggccaggtcgtcgg 527

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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 250     cgccgccttcgtcccgggcgcc 271
               ||||||||||||||||||||||
Sbjct: 1281821 cgccgccttcgtcccgggcgcc 1281842

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>ref|NM_184568.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 933

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 cccggggtcgccgccggcgacc 338
           ||||||||||||||||||||||
Sbjct: 280 cccggggtcgccgccggcgacc 301

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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 448    cggcgtcctcggcatgccgggcctcacggcgtac 481
              |||||| ||||||||||||||| |||| ||||||
Sbjct: 385826 cggcgtgctcggcatgccgggcttcaccgcgtac 385793



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 510     agccgggcgacgcggtgttc 529
               ||||||||||||||||||||
Sbjct: 1033530 agccgggcgacgcggtgttc 1033511

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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 145    cgtcgacgaggccgaggacggc 166
              ||||||||||||||||||||||
Sbjct: 278176 cgtcgacgaggccgaggacggc 278197

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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 145    cgtcgacgaggccgaggacggc 166
              ||||||||||||||||||||||
Sbjct: 190518 cgtcgacgaggccgaggacggc 190539

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>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 145   cgtcgacgaggccgaggacggc 166
             ||||||||||||||||||||||
Sbjct: 32246 cgtcgacgaggccgaggacggc 32267

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 448     cggcgtcctcggcatgccgggcctcacggcgtac 481
               |||||| ||||||||||||||| |||| ||||||
Sbjct: 1705050 cggcgtgctcggcatgccgggcttcaccgcgtac 1705017



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 510     agccgggcgacgcggtgttc 529
               ||||||||||||||||||||
Sbjct: 2351058 agccgggcgacgcggtgttc 2351039

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 448     cggcgtcctcggcatgccgggcctcacggcgtac 481
               |||||| ||||||||||||||| |||| ||||||
Sbjct: 1155317 cggcgtgctcggcatgccgggcttcaccgcgtac 1155284



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 510     agccgggcgacgcggtgttc 529
               ||||||||||||||||||||
Sbjct: 1898311 agccgggcgacgcggtgttc 1898292



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    gccgggcgacgcggtgttcg 530
              ||||||||||||||||||||
Sbjct: 519584 gccgggcgacgcggtgttcg 519603

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 442     ctacaccggcgtcctcggcatg 463
               ||||||||||||||||||||||
Sbjct: 2384965 ctacaccggcgtcctcggcatg 2384986



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 266   ggcgcccccatcaccggctacggcgt 291
             |||||| |||||||||||||||||||
Sbjct: 14386 ggcgcctccatcaccggctacggcgt 14361



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 309     cctcgacgcccggggtcgccgccgg 333
               ||||||||||||||| |||||||||
Sbjct: 3845831 cctcgacgcccgggggcgccgccgg 3845807

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 145     cgtcgacgaggccgaggacggc 166
               ||||||||||||||||||||||
Sbjct: 3745290 cgtcgacgaggccgaggacggc 3745311



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 510     agccgggcgacgcggtgttcg 530
               |||||||||||||||||||||
Sbjct: 2228783 agccgggcgacgcggtgttcg 2228803



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 146    gtcgacgaggccgaggacggc 166
              |||||||||||||||||||||
Sbjct: 910586 gtcgacgaggccgaggacggc 910606

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 517     cgacgcggtgttcgtctcggcggcct 542
               ||||||||||||||||||| ||||||
Sbjct: 1850917 cgacgcggtgttcgtctcgtcggcct 1850892

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>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 248    accgccgccttcgtcccgggcgccc 272
              ||||||||| |||||||||||||||
Sbjct: 192630 accgccgccgtcgtcccgggcgccc 192654

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>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24
          Length = 304250

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 527    ttcgtctcggcggcctccggcgccgtcgg 555
              |||||||| |||||||||||||| |||||
Sbjct: 180572 ttcgtctcagcggcctccggcgcagtcgg 180544

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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cccggggtcgccgccggcgacctcg 341
             ||||||||||||||| |||||||||
Sbjct: 15223 cccggggtcgccgcccgcgacctcg 15247

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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 158  gaggacggctcggtgctggtc 178
            |||||||||||||||||||||
Sbjct: 7395 gaggacggctcggtgctggtc 7415

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>gb|AE005875.1| Caulobacter crescentus CB15 section 201 of 359 of the complete
           genome
          Length = 12929

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 523 ggtgttcgtctcggcggcctccggcgccgtcgg 555
           ||||||||| ||||| ||| |||||||||||||
Sbjct: 557 ggtgttcgtgtcggccgccgccggcgccgtcgg 589

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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 415     gcccgacgacggcgtgccgct 435
               |||||||||||||||||||||
Sbjct: 3188424 gcccgacgacggcgtgccgct 3188444

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 145     cgtcgacgaggccgaggacgg 165
               |||||||||||||||||||||
Sbjct: 1765456 cgtcgacgaggccgaggacgg 1765436

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>ref|XM_465723.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 315 cgcccggggtcgccgccggcgacc 338
           |||||| |||||||||||||||||
Sbjct: 439 cgcccgaggtcgccgccggcgacc 462

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 510     agccgggcgacgcggtgttc 529
               ||||||||||||||||||||
Sbjct: 2458382 agccgggcgacgcggtgttc 2458363

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     gctggtcaagaacctctacc 191
               ||||||||||||||||||||
Sbjct: 2729378 gctggtcaagaacctctacc 2729359

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 511     gccgggcgacgcggtgttcg 530
               ||||||||||||||||||||
Sbjct: 3922495 gccgggcgacgcggtgttcg 3922476

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>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part
             of a novel gene (FLJ30499) and the 3' end of a novel gene
             (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   tggggttccaccacatcggc 502
             ||||||||||||||||||||
Sbjct: 26002 tggggttccaccacatcggc 25983

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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      ggcggcggcgatcgatggcg 58
               ||||||||||||||||||||
Sbjct: 2253407 ggcggcggcgatcgatggcg 2253388



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 536     gcggcctccggcgccgtcgg 555
               ||||||||||||||||||||
Sbjct: 1707421 gcggcctccggcgccgtcgg 1707402

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>emb|X60350.1|MTGROEOP M.tuberculosis groE gene for KCS and 10-kDa products
          Length = 2987

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 160  ggacggctcggtgctggtcaagaa 183
            ||||||||||||| ||||||||||
Sbjct: 2130 ggacggctcggtggtggtcaagaa 2153

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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gcggcgatcgatggcggagc 62
              ||||||||||||||||||||
Sbjct: 970235 gcggcgatcgatggcggagc 970216

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 511     gccgggcgacgcggtgttcg 530
               ||||||||||||||||||||
Sbjct: 3664362 gccgggcgacgcggtgttcg 3664343

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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 accgccgccttcgtcccgggcgcc 271
           |||||||||||||||| |||||||
Sbjct: 496 accgccgccttcgtcctgggcgcc 519

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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 540    cctccggcgccgtcggccagctcgtcgg 567
              |||||| | |||||||||||||||||||
Sbjct: 236940 cctccgacaccgtcggccagctcgtcgg 236913

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 324     tcgccgccggcgacctcgtg 343
               ||||||||||||||||||||
Sbjct: 2841620 tcgccgccggcgacctcgtg 2841639

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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     ggggcatgaccggctgggag 364
               ||||||||||||||||||||
Sbjct: 2545743 ggggcatgaccggctgggag 2545724

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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    tcgccgccggcgacctcgtg 343
              ||||||||||||||||||||
Sbjct: 334996 tcgccgccggcgacctcgtg 335015



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    tcgccgccggcgacctcgtg 343
              ||||||||||||||||||||
Sbjct: 245481 tcgccgccggcgacctcgtg 245500



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    tcgccgccggcgacctcgtg 343
              ||||||||||||||||||||
Sbjct: 225140 tcgccgccggcgacctcgtg 225159

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 315      cgcccggggtcgccgccggcgacc 338
                |||||| |||||||||||||||||
Sbjct: 17033195 cgcccgaggtcgccgccggcgacc 17033172

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 512     ccgggcgacgcggtgttcgt 531
               ||||||||||||||||||||
Sbjct: 6264155 ccgggcgacgcggtgttcgt 6264136

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 531     tctcggcggcctccggcgcc 550
               ||||||||||||||||||||
Sbjct: 5366444 tctcggcggcctccggcgcc 5366463



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 517     cgacgcggtgttcgtctcgg 536
               ||||||||||||||||||||
Sbjct: 2461239 cgacgcggtgttcgtctcgg 2461258



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     caccggctacggcgtgtccg 296
               ||||||||||||||||||||
Sbjct: 1603307 caccggctacggcgtgtccg 1603326

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>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0483C08
          Length = 143855

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 315   cgcccggggtcgccgccggcgacc 338
             |||||| |||||||||||||||||
Sbjct: 14568 cgcccgaggtcgccgccggcgacc 14545

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>dbj|AP005322.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0677G01
          Length = 137031

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 315   cgcccggggtcgccgccggcgacc 338
             |||||| |||||||||||||||||
Sbjct: 84451 cgcccgaggtcgccgccggcgacc 84428

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>gb|AE005081.1| Halobacterium sp. NRC-1 section 112 of 170 of the complete genome
          Length = 19293

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   ggtcgccgccggcgacctcg 341
             ||||||||||||||||||||
Sbjct: 10370 ggtcgccgccggcgacctcg 10389

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>dbj|AK111178.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-F06, full
            insert sequence
          Length = 2778

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  cggcggcgcccgtcgacgaggccg 158
            ||||| ||||||||||||||||||
Sbjct: 2406 cggcgtcgcccgtcgacgaggccg 2429

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>dbj|AK070393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P07,
          full insert sequence
          Length = 1247

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 40 gcggcggcgatcgatggcgg 59
          ||||||||||||||||||||
Sbjct: 17 gcggcggcgatcgatggcgg 36

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      ggtcctcaaggactacgtgg 98
               ||||||||||||||||||||
Sbjct: 2696948 ggtcctcaaggactacgtgg 2696929

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    agccgggcgacgcggtgttc 529
              ||||||||||||||||||||
Sbjct: 781348 agccgggcgacgcggtgttc 781367

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 452     gtcctcggcatgccgggcctcacg 475
               ||||||||||| ||||||||||||
Sbjct: 2682093 gtcctcggcatcccgggcctcacg 2682070

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>gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, complete sequence
          Length = 187733

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    ggcgcacatggagctgctcc 134
              ||||||||||||||||||||
Sbjct: 139561 ggcgcacatggagctgctcc 139542

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>gb|L43074.1|STMFABD Streptomyces glaucescens fabD, fabH, fabC, fabB, and ORF5 genes,
            complete cds
          Length = 4558

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 318  ccggggtcgccgccggcgacctcg 341
            ||||||||||||||| ||||||||
Sbjct: 1774 ccggggtcgccgccgccgacctcg 1797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,433,592
Number of Sequences: 3902068
Number of extensions: 3433592
Number of successful extensions: 78574
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73609
Number of HSP's gapped (non-prelim): 4965
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result