>Y326_METJA (Q57772) Hypothetical protein MJ0326|
          Length = 436

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 37/151 (24%), Positives = 56/151 (37%)
 Frame = +1

Query: 151 KYFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAILTDSGGPCTVLDCTPAGNSTAAPG 330
           KYF+ E   ++   E  AG  TF+TMAYII VN  IL+ +G                   
Sbjct: 8   KYFEFEKYGTNLKVETLAGITTFMTMAYIIFVNPQILSTAG------------------- 48

Query: 331 PECMLGTSNPGYQQCLARTKSDLIVATAVAAMVGSFXXXXXXXXXXXXXXXXXXXXYFTY 510
                                 ++VAT +A+ + +                     YFTY
Sbjct: 49  -----------------MDFGAVMVATCIASAIATLVMGLYARYPFALAPGMGLNAYFTY 91

Query: 511 NMVGFHGSGSIPYRTALAGVMMEGIIFFLLS 603
            +    G   I +R AL  V + G++F +L+
Sbjct: 92  GVCLGMG---IDWRVALGAVFISGVLFIILT 119

>YGFQ_ECOLI (Q46817) Hypothetical protein ygfQ|
          Length = 455

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 154 YFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAILTDSGGP---CTVLDCTPAG 309
           YFK+ AR S+  +E  AG  TFL M Y + V   +L  +G P     V  C  AG
Sbjct: 21  YFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAG 75

>PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)|
          Length = 388

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 29/92 (31%), Positives = 37/92 (40%)
 Frame = -3

Query: 546 GDGARAVEADHVVGEVGVGAHPGGQRQREVGESAHGEGADHSSHSRRNNQVALGARQALL 367
           G G RA  A       GV A PGG+R R     A   G     H R   +  +  R+   
Sbjct: 61  GGGRRAPRASQEWAGPGVVAGPGGRRARRAAGPARAAGLGRGGHRRPGPRRGVDRRRR-- 118

Query: 366 VPRVGRAEHALRPRSGRGVTRRGAVEHGARPA 271
            P  G+     RPR+ +G  RR A   G + A
Sbjct: 119 -PAAGK-HPVRRPRNVQG--RRRAARAGRQMA 146

>YIEG_ECOLI (P31466) Inner membrane protein yieG|
          Length = 445

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 151 KYFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAILTDSG 273
           + FKL    ++   E  AG  TFLTM YI+ VN  IL  +G
Sbjct: 17  RVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAG 57

>YICO_ECOLI (P31440) Inner membrane protein yicO|
          Length = 470

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 151 KYFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAIL 261
           + FKL    ++   E  AG  TFLTM YI+ VN  IL
Sbjct: 44  RLFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQIL 80

>YJCD_ECOLI (P0AF52) Inner membrane protein yjcD|
          Length = 449

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 154 YFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAILTDSGGP---CTVLDCTPAGNSTAA 324
           +FK+  R S+  +E  AG  TFL M Y + V   +L  +G P     V  C  AG  +  
Sbjct: 15  WFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIV 74

Query: 325 PG 330
            G
Sbjct: 75  MG 76

>YJCD_ECO57 (P0AF53) Inner membrane protein yjcD|
          Length = 449

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 154 YFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAILTDSGGP---CTVLDCTPAGNSTAA 324
           +FK+  R S+  +E  AG  TFL M Y + V   +L  +G P     V  C  AG  +  
Sbjct: 15  WFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIV 74

Query: 325 PG 330
            G
Sbjct: 75  MG 76

>CNTP4_MOUSE (Q99P47) Contactin-associated protein-like 4 precursor (Cell|
            recognition molecule Caspr4)
          Length = 1310

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 393  RPDCCDGCGCYGRLLRH-GRSRQPPAG 470
            +P C   CG YG+L RH G+ R+ P+G
Sbjct: 957  QPGCRGHCGSYGKLCRHGGKCREKPSG 983

>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
 Frame = -3

Query: 498 GVGAHPGGQRQREVGESAHGEGADHSS----HSRRNNQVALGAR---QALLVPRVGRAEH 340
           G G H  G  Q   G S HG G+ HSS    H   + Q +   +    +      G+ E 
Sbjct: 347 GFGQHESGSGQSS-GYSKHGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHES 405

Query: 339 ALRPRSGRGVTRRGAVE---HGAR 277
           A R  SGRG    G+ +   HG R
Sbjct: 406 ASRHSSGRGQHSSGSGQSPGHGQR 429

>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 285

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = -3

Query: 573 HDAGERRAVGDGARAVEADHVVGEVGVGAHPGGQR---QREVGESAHGE-------GADH 424
           H +GE  A G      E +H VGE   G  P G+    ++ +GE A GE         +H
Sbjct: 93  HASGEPAATGHA----EGEHTVGEQPSGEQPSGEHLSGEQSLGEHASGEQPSDEQLSGEH 148

Query: 423 SSHSRRNNQVALG 385
           +S  + + + A G
Sbjct: 149 ASGEQPSGEHASG 161

>NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 857

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = -3

Query: 591 EDDALHHDAGERRAVGDGARAVEADHVVGEVGVGAHPGGQRQREVGESAHGEGADHSSHS 412
           E++A+   A E+ A  +     EA+         A  GG ++ E+ E   GE A+     
Sbjct: 496 EEEAVSEKAAEQAAEEEEKEEEEAEEEEAAKSDAAEEGGSKKEEIEEKEEGEEAEEEEAE 555

Query: 411 RRNNQVALGAR 379
            +      GA+
Sbjct: 556 AKGKAEEAGAK 566

>RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 571

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 36/129 (27%), Positives = 45/129 (34%), Gaps = 19/129 (14%)
 Frame = -3

Query: 600 KEEEDDA------LHHDAGERRAVGDGARAVEADHVVGEVGVGAHPGGQRQREVGESAHG 439
           +E +DDA      +  +A E+RA  +  R           G    PGG R    G    G
Sbjct: 404 EEADDDAGDSVGTIFREAREQRAAEEQRRG----------GGRGGPGGSRSGSGGGRRDG 453

Query: 438 EGADHSSHSRRNNQV-------------ALGARQALLVPRVGRAEHALRPRSGRGVTRRG 298
            GAD     RR  +V              + A  A   P  G A+    PR  R   R G
Sbjct: 454 AGADGKPRPRRKPRVEGQAPAAAASTEHPVVAAVAAQAPSAGVADAERAPRKRRR-RRNG 512

Query: 297 AVEHGARPA 271
               GA PA
Sbjct: 513 RPVEGAEPA 521

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 347  PSMHSGPGAAV-ELPAGVQSSTVHGPPESVRMAALTEMMYAMVRK-VAAPARCSLVKELL 174
            P   SGPGA + + PA  Q  T  GPP+S   A         V+K   APA   L  +  
Sbjct: 900  PHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEPKAE 959

Query: 173  RASSLKYLPT 144
            +A ++K   T
Sbjct: 960  QAPTVKRTET 969

>DNAJ1_MYCPA (Q73XZ6) Chaperone protein dnaJ 1|
          Length = 381

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = -3

Query: 549 VGDGARAVEADHVVGEVGVGAHPGGQRQREVGESAHG----EGAD-HSSHSRRNNQVALG 385
           VGDG R   A    GEVG G  P G    EV E  H     EG D H + S      ALG
Sbjct: 225 VGDGMRVRLAAQ--GEVGPGGGPAGDLYVEVHEQPHDVFVREGDDLHCTVSVPMVDAALG 282

Query: 384 ARQALLVPRVGRAEHALRP--RSGRGVTRRG 298
           A   +     G +E  + P  + G  +T RG
Sbjct: 283 ATVTVDAILDGVSEITIPPGTQPGSVITLRG 313

>Y125_HAEIN (P44530) Hypothetical protein HI0125|
          Length = 438

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 151 KYFKLEARKSSFTKEQRAGAATFLTMAYIISVNAAILTDSGGPCT---VLDCTPAG 309
           K F+L+ R S+  +E  AG  TFL M Y + V   +L  +G P     +  C  AG
Sbjct: 6   KTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAG 61

>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1904

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 GRSWAGVHARHVQPGVPAVPGAHQER 395
           G S AG+H RH QPG P    AHQ R
Sbjct: 153 GSSAAGLHQRHHQPGAP----AHQHR 174

>PUR5_XANAC (Q8PID9) Phosphoribosylformylglycinamidine cyclo-ligase (EC|
           6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole
           synthetase) (AIR synthase)
          Length = 341

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
 Frame = -3

Query: 567 AGERRAVGDGARAVEADHVVGEVGVGAHPGGQRQ-REVGESAHGEGADHSSHSRRNNQVA 391
           A E+  + DGA+  E D ++G    G H  G    R++ E A G  A+H          A
Sbjct: 157 AVEKSQLLDGAQVREGDVLIGIASSGPHSNGYSLIRKIYERA-GAPAEHVLDDGTKLIDA 215

Query: 390 LGARQALLVPRV-------GRAEHALRPRSGRGVT 307
           L A  AL V  V       G A HA+   +G G+T
Sbjct: 216 LMAPTALYVKPVLALLKSHGEAIHAMAHITGGGLT 250

>REGQ_BPVT2 (P68923) Antitermination protein Q|
          Length = 144

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = +3

Query: 372 VPGAHQERPDCCDG-----CGCYGRLLRHGR 449
           +P   + RP CCD      CGC  RL R+ R
Sbjct: 35  IPEKVKSRPQCCDDDAMVICGCIARLYRNNR 65

>REGQ_BP933 (P68922) Antitermination protein Q|
          Length = 144

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = +3

Query: 372 VPGAHQERPDCCDG-----CGCYGRLLRHGR 449
           +P   + RP CCD      CGC  RL R+ R
Sbjct: 35  IPEKVKSRPQCCDDDAMVICGCIARLYRNNR 65

>HSPB6_HUMAN (O14558) Heat-shock protein beta-6 (HspB6) (Heat-shock 20 kDa-like|
           protein p20)
          Length = 160

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -1

Query: 536 PEPWKPTML*VK*ALAPIPGASASGRLARAPMAK---EPTIAATAVATIRSLLVRARHCW 366
           P P +P+ L  + A AP+PG SA GRL      +   E  +AA    T+    +RA    
Sbjct: 4   PVPVQPSWL--RRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVA 61

Query: 365 YPGLDVPS 342
            P   VP+
Sbjct: 62  LPVAQVPT 69

>SYGB_STRP1 (Q99YI4) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase beta chain) (GlyRS)
          Length = 679

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 254 AALTEMMYAMVRKVAAPARCSLVKELLRASSLKYLPTLLAATERFTAASASENLR 90
           A +   + A V K+   A    ++E + ASS   +P +LAA E    AS +EN +
Sbjct: 520 ADVMNFIRARVDKMMGKAAPKDIREAILASSTFVVPEMLAAAEALVKASHTENYK 574

>Y1412_STRCO (Q9RKX1) UPF0317 protein SCO1412|
          Length = 277

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = +1

Query: 202 AGAATFLTMAYIISVNA-------AILTDSGGPCTVLDCTPAGNSTAAPGPECMLGTSNP 360
           AG A   T A +ISV A          T +  PC VLD T AG+ T        L T  P
Sbjct: 41  AGVAAGHTQANLISVPADWAYDMLLFCTRNPQPCPVLDVTDAGSWTTVLADGADLRTDLP 100

Query: 361 GYQ 369
            Y+
Sbjct: 101 RYR 103

>CEBPA_HUMAN (P49715) CCAAT/enhancer-binding protein alpha (C/EBP alpha)|
          Length = 358

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 353 DVPSMHSGPGAAVELPAGVQSSTVHGPPESVRMAA---LTEMMYAMVRKVAAPARCSLV 186
           D P   +GPG AV +P G      HGPP     AA   L   +  +  +V APA   LV
Sbjct: 107 DYPGAPAGPGGAV-MPGGA-----HGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLV 159

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 30/83 (36%), Positives = 35/83 (42%)
 Frame = -3

Query: 600 KEEEDDALHHDAGERRAVGDGARAVEADHVVGEVGVGAHPGGQRQREVGESAHGEGADHS 421
           +EEED     D  E RA G+G      D   G  G G   GG  + E  ES   EGA  S
Sbjct: 338 EEEEDGDGDEDEDEDRAEGEG----REDGGEGPRGAG---GGAGESE-SESGRAEGAPRS 389

Query: 420 SHSRRNNQVALGARQALLVPRVG 352
           +      QV +     LLV R G
Sbjct: 390 A----EQQVGVAGVLGLLVVRDG 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,292,123
Number of Sequences: 219361
Number of extensions: 1338475
Number of successful extensions: 5787
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5778
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)