ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YG0H_SCHPO (O94729) Hypothetical protein C1604.17c in chromosome II 30 5.4
2T2C_PARTE (Q27181) Trichocyst matrix protein T2-C precursor (Sec... 29 9.3

>YG0H_SCHPO (O94729) Hypothetical protein C1604.17c in chromosome II|
          Length = 459

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 405 TKEGKPAGYNTKWDELHADSQKALLQIEDKIREY 506
           T +G+P  +    D+ H+D  KALL+ + K + Y
Sbjct: 171 TDQGRPVAFELPPDKFHSDQSKALLEPKWKTKNY 204



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>T2C_PARTE (Q27181) Trichocyst matrix protein T2-C precursor (Secretory|
           granule protein T2-C) (TMP 2-C) [Contains: Trichocyst
           matrix protein T2-C 1; Trichocyst matrix protein T2-C 2]
          Length = 387

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 408 KEGKPAGYNTKWDELHADSQKALLQIEDKIREYKDESERLDQCSRLHDSSISNVNF 575
           K+ +  GY    DEL A   +     E+K+ E+++ +  + +  RL   +I + +F
Sbjct: 126 KQAEVKGYQKDLDELDAQRAEEKADFEEKVLEHQEATAIIAEARRLFADNIEHESF 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,258,964
Number of Sequences: 219361
Number of extensions: 500901
Number of successful extensions: 1945
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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