ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
3dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
4gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial ... 44 0.53
5ref|XM_390040.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 44 0.53
6emb|Y13833.1|SCY13833 Streptomyces coelicolor arsC (partial), gl... 44 0.53
7emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 44 0.53
8gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 2.1
9emb|AL663005.3|OSJN00208 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
10emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17dbj|AK120486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
18dbj|AK109238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
19dbj|AK072036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
20ref|XM_529922.1| PREDICTED: Pan troglodytes LOC455203 (LOC455203... 40 8.2
21ref|XM_482823.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
22ref|XM_507261.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 8.2
23gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 8.2
24gb|AC159703.1| Trypanosoma brucei chromosome 8 clone RPCI93-30K1... 40 8.2
25gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 8.2
26gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
27gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome... 40 8.2
28emb|AL137027.17| Human DNA sequence from clone RP5-1125N11 on ch... 40 8.2
29gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 8.2
30gb|DQ396422.1| Phytophthora polonica isolate UASWS0210 internal ... 40 8.2
31gb|AC015656.9| Homo sapiens, clone RP11-81K2, complete sequence 40 8.2
32gb|AC091180.20| Homo sapiens chromosome 17, clone RP11-1079K10, ... 40 8.2
33dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.2
36gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.2
37gb|AF225328.1|AF225328 Centrocercus urophasianus clone 7 endogen... 40 8.2
38gb|AF225327.1|AF225327 Centrocercus urophasianus clone 6 endogen... 40 8.2
39dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
40dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
41dbj|AK102612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
42gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 40 8.2
43dbj|AK059195.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
44gb|AC171179.2| Gallus gallus BAC clone CH261-31A13 from chromoso... 40 8.2 
>dbj|AK103120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119I02, full
           insert sequence
          Length = 1771

 Score =  232 bits (117), Expect = 1e-57
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 394 tgatgctgtatacaaaggaggggaagcccgcagggtacaacacgaagtgggacgagctcc 453
           ||||||| ||||| | ||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 260 tgatgctatatacgacggacgggaagcccgcggggtacaacacgaagtgggaggagcttc 319

                                                                       
Query: 454 acgccgactcgcagaaggcgctgcttcagatcgaggataaaatacgggagtacaaggacg 513
           ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct: 320 acgccgagtcgcagaaggcgctgctccagatcgaggataaaataagggagtacagggacg 379

                                                                       
Query: 514 agagtgaaaggttggatcagtgcagccgccttcatgactcctcaatctcaaatgtcaatt 573
           |||| || ||||||||||||||    |||||||||||||| |||||||||| ||||||||
Sbjct: 380 agagcgagaggttggatcagtgttctcgccttcatgactcttcaatctcaactgtcaatt 439

                                            
Query: 574 ttgagctcgatgcaagtcacattgctcaggaac 606
           |||||   ||||||||| | |||||||||||||
Sbjct: 440 ttgagaatgatgcaagtgaaattgctcaggaac 472



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 93  gcaatggcgttctccttctcctcgccggcgcagcagaaccctttccagacgcc 145
           |||||||||||||||||| |||| ||||||| |||||| || |||||||||||
Sbjct: 82  gcaatggcgttctccttcgcctcaccggcgccgcagaatccgttccagacgcc 134
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                            
Query: 394      tgatgctgtatacaaaggaggggaagcccgcagggtacaacacgaagtgggacgagctcc 453
                ||||||| ||||| | ||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 16959445 tgatgctatatacgacggacgggaagcccgcggggtacaacacgaagtgggaggagcttc 16959386

                                                   
Query: 454      acgccgactcgcagaaggcgctgcttcagatcgag 488
                ||||||| ||||||||||||||||| |||||||||
Sbjct: 16959385 acgccgagtcgcagaaggcgctgctccagatcgag 16959351



 Score =  111 bits (56), Expect = 3e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                            
Query: 488      ggataaaatacgggagtacaaggacgagagtgaaaggttggatcagtgcagccgccttca 547
                |||||||||| ||||||||| ||||||||| || ||||||||||||||    ||||||||
Sbjct: 16958733 ggataaaataagggagtacagggacgagagcgagaggttggatcagtgttctcgccttca 16958674

                                                                        
Query: 548      tgactcctcaatctcaaatgtcaattttgagctcgatgcaagtcacattgctcagg 603
                |||||| |||||||||| |||||||||||||   ||||||||| | ||||||||||
Sbjct: 16958673 tgactcttcaatctcaactgtcaattttgagaatgatgcaagtgaaattgctcagg 16958618



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 93       gcaatggcgttctccttctcctcgccggcgcagcagaaccctttccagacgcc 145
                |||||||||||||||||| |||| ||||||| |||||| || |||||||||||
Sbjct: 16959623 gcaatggcgttctccttcgcctcaccggcgccgcagaatccgttccagacgcc 16959571
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                         
Query: 394   tgatgctgtatacaaaggaggggaagcccgcagggtacaacacgaagtgggacgagctcc 453
             ||||||| ||||| | ||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 89258 tgatgctatatacgacggacgggaagcccgcggggtacaacacgaagtgggaggagcttc 89199

                                                
Query: 454   acgccgactcgcagaaggcgctgcttcagatcgag 488
             ||||||| ||||||||||||||||| |||||||||
Sbjct: 89198 acgccgagtcgcagaaggcgctgctccagatcgag 89164



 Score =  111 bits (56), Expect = 3e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                         
Query: 488   ggataaaatacgggagtacaaggacgagagtgaaaggttggatcagtgcagccgccttca 547
             |||||||||| ||||||||| ||||||||| || ||||||||||||||    ||||||||
Sbjct: 88546 ggataaaataagggagtacagggacgagagcgagaggttggatcagtgttctcgccttca 88487

                                                                     
Query: 548   tgactcctcaatctcaaatgtcaattttgagctcgatgcaagtcacattgctcagg 603
             |||||| |||||||||| |||||||||||||   ||||||||| | ||||||||||
Sbjct: 88486 tgactcttcaatctcaactgtcaattttgagaatgatgcaagtgaaattgctcagg 88431



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 93    gcaatggcgttctccttctcctcgccggcgcagcagaaccctttccagacgcc 145
             |||||||||||||||||| |||| ||||||| |||||| || |||||||||||
Sbjct: 89436 gcaatggcgttctccttcgcctcaccggcgccgcagaatccgttccagacgcc 89384
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>gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence
          Length = 37100

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 102   ttctccttctcctcgccggcgc 123
             ||||||||||||||||||||||
Sbjct: 15972 ttctccttctcctcgccggcgc 15951
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>ref|XM_390040.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG09864.1)
           partial mRNA
          Length = 834

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  ggcgttctccttctcctcgccg 119
           ||||||||||||||||||||||
Sbjct: 575 ggcgttctccttctcctcgccg 596
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>emb|Y13833.1|SCY13833 Streptomyces coelicolor arsC (partial), glnII genes, ORF2, ORF3 &
           ORF
          Length = 3873

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 52  cgcgccgccctcgccggagagg 73
           ||||||||||||||||||||||
Sbjct: 975 cgcgccgccctcgccggagagg 954
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 52     cgcgccgccctcgccggagagg 73
              ||||||||||||||||||||||
Sbjct: 270476 cgcgccgccctcgccggagagg 270455
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 216     caggcgccggcgcagtcgccttcgccgtt 244
               ||||||||||||| |||||| ||||||||
Sbjct: 4782510 caggcgccggcgctgtcgccatcgccgtt 4782538
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>emb|AL663005.3|OSJN00208 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062H02,
              complete sequence
          Length = 166747

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     cgccgccctcgccggagagga 74
              |||||||||||||||||||||
Sbjct: 117874 cgccgccctcgccggagagga 117894
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>emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087H01,
              complete sequence
          Length = 166906

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     cgccgccctcgccggagagga 74
              |||||||||||||||||||||
Sbjct: 140450 cgccgccctcgccggagagga 140430
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 54       cgccgccctcgccggagagga 74
                |||||||||||||||||||||
Sbjct: 14961136 cgccgccctcgccggagagga 14961156



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 54       cgccgccctcgccggagagga 74
                |||||||||||||||||||||
Sbjct: 14407531 cgccgccctcgccggagagga 14407511
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 103      tctccttctcctcgccggcgc 123
                |||||||||||||||||||||
Sbjct: 23980963 tctccttctcctcgccggcgc 23980983
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 103      tctccttctcctcgccggcgc 123
                |||||||||||||||||||||
Sbjct: 22389641 tctccttctcctcgccggcgc 22389661
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>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1267B06
          Length = 156989

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    tctccttctcctcgccggcgc 123
              |||||||||||||||||||||
Sbjct: 148285 tctccttctcctcgccggcgc 148305
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>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_A05
          Length = 113326

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   tctccttctcctcgccggcgc 123
             |||||||||||||||||||||
Sbjct: 45860 tctccttctcctcgccggcgc 45880
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0490F09
          Length = 149542

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    tctccttctcctcgccggcgc 123
              |||||||||||||||||||||
Sbjct: 110574 tctccttctcctcgccggcgc 110594
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>dbj|AK120486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113P19, full
            insert sequence
          Length = 2206

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 103  tctccttctcctcgccggcgc 123
            |||||||||||||||||||||
Sbjct: 1888 tctccttctcctcgccggcgc 1868
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>dbj|AK109238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F10, full
           insert sequence
          Length = 722

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 103 tctccttctcctcgccggcgc 123
           |||||||||||||||||||||
Sbjct: 235 tctccttctcctcgccggcgc 215
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>dbj|AK072036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106D24, full
            insert sequence
          Length = 1500

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 103  tctccttctcctcgccggcgc 123
            |||||||||||||||||||||
Sbjct: 1237 tctccttctcctcgccggcgc 1217
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>ref|XM_529922.1| PREDICTED: Pan troglodytes LOC455203 (LOC455203), mRNA
          Length = 862

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 43 ccggctccccgcgccgccctcgcc 66
          ||||||||||||||||||| ||||
Sbjct: 77 ccggctccccgcgccgcccccgcc 54
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>ref|XM_482823.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  gccgccctcgccggagagga 74
           ||||||||||||||||||||
Sbjct: 234 gccgccctcgccggagagga 215
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>ref|XM_507261.1| PREDICTED Oryza sativa (japonica cultivar-group), B1111C03.37 mRNA
          Length = 1462

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  gccgccctcgccggagagga 74
           ||||||||||||||||||||
Sbjct: 343 gccgccctcgccggagagga 324
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     ccccgcgccgccctcgccgg 68
              ||||||||||||||||||||
Sbjct: 108235 ccccgcgccgccctcgccgg 108254
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>gb|AC159703.1| Trypanosoma brucei chromosome 8 clone RPCI93-30K1, complete sequence
          Length = 148802

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cgttctccttctcctcgccg 119
             ||||||||||||||||||||
Sbjct: 32453 cgttctccttctcctcgccg 32434
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     cgttctccttctcctcgccg 119
               ||||||||||||||||||||
Sbjct: 1882271 cgttctccttctcctcgccg 1882252
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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
              complete sequence
          Length = 159932

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    ctccttctcctcgccggcgc 123
              ||||||||||||||||||||
Sbjct: 128320 ctccttctcctcgccggcgc 128339
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>gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome 19, complete sequence
          Length = 165998

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 466    agaaggcgctgcttcagatcgaggataa 493
              ||||||||||| ||||||| ||||||||
Sbjct: 104225 agaaggcgctgtttcagatagaggataa 104198
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>emb|AL137027.17| Human DNA sequence from clone RP5-1125N11 on chromosome 1p34.2-35.3
             Contains the 5' end of the gene for Lysosomal-associated
             multispanning membrane protein-5 (LAPTM5), a novel gene
             and the 5' end of a novel gene, complete sequence
          Length = 101143

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   aggataaaatacgggagtac 506
             ||||||||||||||||||||
Sbjct: 59951 aggataaaatacgggagtac 59932
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tccgttccaaaccccagccc 177
              ||||||||||||||||||||
Sbjct: 186715 tccgttccaaaccccagccc 186734
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>gb|DQ396422.1| Phytophthora polonica isolate UASWS0210 internal transcribed spacer
           1, 5.8S ribosomal RNA gene, and internal transcribed
           spacer 2, complete sequence
          Length = 820

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 cagacgccaacgcagcagaa 157
           ||||||||||||||||||||
Sbjct: 660 cagacgccaacgcagcagaa 641
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>gb|AC015656.9| Homo sapiens, clone RP11-81K2, complete sequence
          Length = 147775

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     ccggctccccgcgccgccctcgcc 66
              ||||||||||||||||||| ||||
Sbjct: 147612 ccggctccccgcgccgcccccgcc 147589
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>gb|AC091180.20| Homo sapiens chromosome 17, clone RP11-1079K10, complete sequence
          Length = 183690

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    ccggctccccgcgccgccctcgcc 66
             ||||||||||||||||||| ||||
Sbjct: 69548 ccggctccccgcgccgcccccgcc 69571
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       gccgccctcgccggagagga 74
                ||||||||||||||||||||
Sbjct: 22773683 gccgccctcgccggagagga 22773702
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      ctccttctcctcgccggcgc 123
                ||||||||||||||||||||
Sbjct: 17598515 ctccttctcctcgccggcgc 17598534
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      gcgccgccctcgccggagag 72
               ||||||||||||||||||||
Sbjct: 7225629 gcgccgccctcgccggagag 7225648
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     ctccggcgccggcgcagact 215
               ||||||||||||||||||||
Sbjct: 2379741 ctccggcgccggcgcagact 2379760
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>gb|AF225328.1|AF225328 Centrocercus urophasianus clone 7 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 756

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 ttctccttctcctcgccggc 121
           ||||||||||||||||||||
Sbjct: 348 ttctccttctcctcgccggc 329
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>gb|AF225327.1|AF225327 Centrocercus urophasianus clone 6 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 756

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 ttctccttctcctcgccggc 121
           ||||||||||||||||||||
Sbjct: 348 ttctccttctcctcgccggc 329
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>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1116H04
          Length = 140142

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gccgccctcgccggagagga 74
              ||||||||||||||||||||
Sbjct: 100325 gccgccctcgccggagagga 100344
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>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1111C03
          Length = 144879

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gccgccctcgccggagagga 74
              ||||||||||||||||||||
Sbjct: 142477 gccgccctcgccggagagga 142496
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>dbj|AK102612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099D06, full
           insert sequence
          Length = 1296

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  gccgccctcgccggagagga 74
           ||||||||||||||||||||
Sbjct: 234 gccgccctcgccggagagga 215
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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    cccggctccccgcgccgccc 61
             ||||||||||||||||||||
Sbjct: 13466 cccggctccccgcgccgccc 13447
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>dbj|AK059195.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A01, full
           insert sequence
          Length = 1462

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  gccgccctcgccggagagga 74
           ||||||||||||||||||||
Sbjct: 343 gccgccctcgccggagagga 324
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>gb|AC171179.2| Gallus gallus BAC clone CH261-31A13 from chromosome ul, complete
             sequence
          Length = 247380

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   aaggttggatcagtgcagcc 540
             ||||||||||||||||||||
Sbjct: 69730 aaggttggatcagtgcagcc 69749


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,401,675
Number of Sequences: 3902068
Number of extensions: 3401675
Number of successful extensions: 72814
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72002
Number of HSP's gapped (non-prelim): 809
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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