ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF005086.1|AF005086 Triticum aestivum heat shock protein 70 (... 68 9e-10
2ref|XM_470141.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.013
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.013
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.013
5gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 44 0.013
6dbj|AK102784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.013
7dbj|AK069740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.013
8gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock prote... 40 0.20
9gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 38 0.78
10emb|X67711.2|OSHSC70A O.sativa hsp70 gene for heat shock protein 70 38 0.78
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 0.78
12dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 0.78
13gb|AC018758.2|AC018758 Homo sapiens chromosome 19, BAC CTB-61I7 ... 38 0.78
14dbj|AK119255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 0.78
15dbj|AK065431.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 0.78
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 0.78
17gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 36 3.1
18emb|Z73900.1|HSU85H7 Human DNA sequence from clone LL0XNC01-85H7... 36 3.1
19emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 36 3.1
20emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 36 3.1
21emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 36 3.1
22gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 36 3.1
23dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 36 3.1
24emb|Z93103.1|MAZ93103 M.acuminata mRNA; clone pBAN UU93 36 3.1

>gb|AF005086.1|AF005086 Triticum aestivum heat shock protein 70 (hsp70) mRNA, partial cds
          Length = 390

 Score = 67.9 bits (34), Expect = 9e-10
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 1   atggcgccgaccaagggcgaggggccggccatcg 34
           ||||||||||||||||||||||||||||||||||
Sbjct: 93  atggcgccgaccaagggcgaggggccggccatcg 126



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>ref|XM_470141.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2522

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 1   atggcgccgaccaagggcgaggggcc 26
           ||||||||||||||||| ||||||||
Sbjct: 96  atggcgccgaccaagggggaggggcc 121



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 1        atggcgccgaccaagggcgaggggcc 26
                ||||||||||||||||| ||||||||
Sbjct: 34142570 atggcgccgaccaagggggaggggcc 34142595



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 1        atggcgccgaccaagggcgaggggcc 26
                ||||||||||||||||| ||||||||
Sbjct: 34233042 atggcgccgaccaagggggaggggcc 34233067



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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1      atggcgccgaccaagggcgaggggcc 26
              ||||||||||||||||| ||||||||
Sbjct: 106382 atggcgccgaccaagggggaggggcc 106407



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>dbj|AK102784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K19, full
           insert sequence
          Length = 2370

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 1   atggcgccgaccaagggcgaggggcc 26
           ||||||||||||||||| ||||||||
Sbjct: 129 atggcgccgaccaagggggaggggcc 154



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>dbj|AK069740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030D03, full
           insert sequence
          Length = 2282

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 1   atggcgccgaccaagggcgaggggcc 26
           ||||||||||||||||| ||||||||
Sbjct: 131 atggcgccgaccaagggggaggggcc 156



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>gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock protein (TaHSP70d) mRNA,
           complete cds
          Length = 2311

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 11  ccaagggcgaggggccggccatcg 34
           ||||||||||||||||||| ||||
Sbjct: 119 ccaagggcgaggggccggcgatcg 142



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>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16
              map C481S, complete sequence
          Length = 179668

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 12     caagggcgaggggccggccatcg 34
              |||||||||||| ||||||||||
Sbjct: 131783 caagggcgagggtccggccatcg 131805



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>emb|X67711.2|OSHSC70A O.sativa hsp70 gene for heat shock protein 70
          Length = 4791

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 12  caagggcgaggggccggccatcg 34
           |||||||||||| ||||||||||
Sbjct: 697 caagggcgagggtccggccatcg 719



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 12       caagggcgaggggccggccatcg 34
                |||||||||||| ||||||||||
Sbjct: 28173228 caagggcgagggtccggccatcg 28173250



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 8       cgaccaagggcgaggggccggcc 30
               |||||||||||||||| ||||||
Sbjct: 2037085 cgaccaagggcgagggaccggcc 2037063



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>gb|AC018758.2|AC018758 Homo sapiens chromosome 19, BAC CTB-61I7 (BC52850), complete sequence
          Length = 185409

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aagggcgaggggccggcca 31
             |||||||||||||||||||
Sbjct: 39790 aagggcgaggggccggcca 39772



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>dbj|AK119255.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H02, full
           insert sequence
          Length = 2311

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 12  caagggcgaggggccggccatcg 34
           |||||||||||| ||||||||||
Sbjct: 185 caagggcgagggtccggccatcg 207



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>dbj|AK065431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021C17, full
           insert sequence
          Length = 2380

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 12  caagggcgaggggccggccatcg 34
           |||||||||||| ||||||||||
Sbjct: 81  caagggcgagggtccggccatcg 103



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 12       caagggcgaggggccggccatcg 34
                |||||||||||| ||||||||||
Sbjct: 28158106 caagggcgagggtccggccatcg 28158128



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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 16      ggcgaggggccggccatc 33
               ||||||||||||||||||
Sbjct: 2882401 ggcgaggggccggccatc 2882418



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>emb|Z73900.1|HSU85H7 Human DNA sequence from clone LL0XNC01-85H7 on chromosome X Contains
             the 5' end of the SYTL4 gene for synaptotagmin-like 4
             (granuphilin-a) and two CpG islands, complete sequence
          Length = 37054

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 9     gaccaagggcgaggggccggcc 30
             |||| |||||||||||||||||
Sbjct: 33896 gaccgagggcgaggggccggcc 33917



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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      tggcgccgaccaagggcg 19
              ||||||||||||||||||
Sbjct: 341884 tggcgccgaccaagggcg 341901



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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      tggcgccgaccaagggcg 19
              ||||||||||||||||||
Sbjct: 249718 tggcgccgaccaagggcg 249735



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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      tggcgccgaccaagggcg 19
              ||||||||||||||||||
Sbjct: 116994 tggcgccgaccaagggcg 117011



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 14      agggcgaggggccggcca 31
               ||||||||||||||||||
Sbjct: 2338067 agggcgaggggccggcca 2338050



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 1       atggcgccgaccaagggcgagg 22
               ||||||||||||||| ||||||
Sbjct: 3534682 atggcgccgaccaagcgcgagg 3534703



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>emb|Z93103.1|MAZ93103 M.acuminata mRNA; clone pBAN UU93
          Length = 774

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 13  aagggcgaggggccggccatcg 34
           ||||||||||||||||| ||||
Sbjct: 81  aagggcgaggggccggcgatcg 102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,241
Number of Sequences: 3902068
Number of extensions: 107241
Number of successful extensions: 25277
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24806
Number of HSP's gapped (non-prelim): 471
length of query: 34
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 14
effective length of database: 17,155,003,908
effective search space: 240170054712
effective search space used: 240170054712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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