Clone Name | bart17b04 |
---|---|
Clone Library Name | barley_pub |
>gb|AF005086.1|AF005086 Triticum aestivum heat shock protein 70 (hsp70) mRNA, partial cds Length = 390 Score = 67.9 bits (34), Expect = 9e-10 Identities = 34/34 (100%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggccggccatcg 34 |||||||||||||||||||||||||||||||||| Sbjct: 93 atggcgccgaccaagggcgaggggccggccatcg 126
>ref|XM_470141.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2522 Score = 44.1 bits (22), Expect = 0.013 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggcc 26 ||||||||||||||||| |||||||| Sbjct: 96 atggcgccgaccaagggggaggggcc 121
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.013 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggcc 26 ||||||||||||||||| |||||||| Sbjct: 34142570 atggcgccgaccaagggggaggggcc 34142595
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.013 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggcc 26 ||||||||||||||||| |||||||| Sbjct: 34233042 atggcgccgaccaagggggaggggcc 34233067
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 44.1 bits (22), Expect = 0.013 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggcc 26 ||||||||||||||||| |||||||| Sbjct: 106382 atggcgccgaccaagggggaggggcc 106407
>dbj|AK102784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K19, full insert sequence Length = 2370 Score = 44.1 bits (22), Expect = 0.013 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggcc 26 ||||||||||||||||| |||||||| Sbjct: 129 atggcgccgaccaagggggaggggcc 154
>dbj|AK069740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030D03, full insert sequence Length = 2282 Score = 44.1 bits (22), Expect = 0.013 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgaggggcc 26 ||||||||||||||||| |||||||| Sbjct: 131 atggcgccgaccaagggggaggggcc 156
>gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock protein (TaHSP70d) mRNA, complete cds Length = 2311 Score = 40.1 bits (20), Expect = 0.20 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 ccaagggcgaggggccggccatcg 34 ||||||||||||||||||| |||| Sbjct: 119 ccaagggcgaggggccggcgatcg 142
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 caagggcgaggggccggccatcg 34 |||||||||||| |||||||||| Sbjct: 131783 caagggcgagggtccggccatcg 131805
>emb|X67711.2|OSHSC70A O.sativa hsp70 gene for heat shock protein 70 Length = 4791 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 caagggcgaggggccggccatcg 34 |||||||||||| |||||||||| Sbjct: 697 caagggcgagggtccggccatcg 719
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 caagggcgaggggccggccatcg 34 |||||||||||| |||||||||| Sbjct: 28173228 caagggcgagggtccggccatcg 28173250
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Minus Query: 8 cgaccaagggcgaggggccggcc 30 |||||||||||||||| |||||| Sbjct: 2037085 cgaccaagggcgagggaccggcc 2037063
>gb|AC018758.2|AC018758 Homo sapiens chromosome 19, BAC CTB-61I7 (BC52850), complete sequence Length = 185409 Score = 38.2 bits (19), Expect = 0.78 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aagggcgaggggccggcca 31 ||||||||||||||||||| Sbjct: 39790 aagggcgaggggccggcca 39772
>dbj|AK119255.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H02, full insert sequence Length = 2311 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 caagggcgaggggccggccatcg 34 |||||||||||| |||||||||| Sbjct: 185 caagggcgagggtccggccatcg 207
>dbj|AK065431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021C17, full insert sequence Length = 2380 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 caagggcgaggggccggccatcg 34 |||||||||||| |||||||||| Sbjct: 81 caagggcgagggtccggccatcg 103
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 0.78 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 caagggcgaggggccggccatcg 34 |||||||||||| |||||||||| Sbjct: 28158106 caagggcgagggtccggccatcg 28158128
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ggcgaggggccggccatc 33 |||||||||||||||||| Sbjct: 2882401 ggcgaggggccggccatc 2882418
>emb|Z73900.1|HSU85H7 Human DNA sequence from clone LL0XNC01-85H7 on chromosome X Contains the 5' end of the SYTL4 gene for synaptotagmin-like 4 (granuphilin-a) and two CpG islands, complete sequence Length = 37054 Score = 36.2 bits (18), Expect = 3.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 9 gaccaagggcgaggggccggcc 30 |||| ||||||||||||||||| Sbjct: 33896 gaccgagggcgaggggccggcc 33917
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 tggcgccgaccaagggcg 19 |||||||||||||||||| Sbjct: 341884 tggcgccgaccaagggcg 341901
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 tggcgccgaccaagggcg 19 |||||||||||||||||| Sbjct: 249718 tggcgccgaccaagggcg 249735
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 tggcgccgaccaagggcg 19 |||||||||||||||||| Sbjct: 116994 tggcgccgaccaagggcg 117011
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 agggcgaggggccggcca 31 |||||||||||||||||| Sbjct: 2338067 agggcgaggggccggcca 2338050
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 36.2 bits (18), Expect = 3.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 atggcgccgaccaagggcgagg 22 ||||||||||||||| |||||| Sbjct: 3534682 atggcgccgaccaagcgcgagg 3534703
>emb|Z93103.1|MAZ93103 M.acuminata mRNA; clone pBAN UU93 Length = 774 Score = 36.2 bits (18), Expect = 3.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 13 aagggcgaggggccggccatcg 34 ||||||||||||||||| |||| Sbjct: 81 aagggcgaggggccggcgatcg 102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 107,241 Number of Sequences: 3902068 Number of extensions: 107241 Number of successful extensions: 25277 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24806 Number of HSP's gapped (non-prelim): 471 length of query: 34 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 14 effective length of database: 17,155,003,908 effective search space: 240170054712 effective search space used: 240170054712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)