ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart17a09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475288.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 117 bits (59), Expect = 4e-23 Identities = 131/155 (84%) Strand = Plus / Plus Query: 211 gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 270 ||||||||||| || || |||||||| ||||||||||| | || ||| || | || || Sbjct: 127 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 186 Query: 271 gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 330 | || |||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 187 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 246 Query: 331 atcattgccgtcgtctgcgccgtcttctcatggat 365 ||| | | |||||||||||||||| |||||||||| Sbjct: 247 atcgtcggcgtcgtctgcgccgtcatctcatggat 281 Score = 60.0 bits (30), Expect = 8e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcacta 160 ||||| ||| ||||||| ||||||||||||||| | ||||||||| | |||||||||| Sbjct: 40 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcacta 97
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 113 bits (57), Expect = 6e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 211 gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 270 ||||||||||| || || |||||||| ||||||||||| | || ||| || | || || Sbjct: 93937 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 93996 Query: 271 gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 330 | || |||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 93997 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 94056 Query: 331 atcattgccgtcgtctgcgccgtcttctcatgg 363 ||| | | |||||||||||||||| |||||||| Sbjct: 94057 atcgtcggcgtcgtctgcgccgtcatctcatgg 94089 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||| | |||||||||||||||||||| ||||||||||| |||||| | Sbjct: 85836 ggcggctgctgcgggtgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 85895 Query: 337 gccgtcgtctgcgccgtcttctc 359 | ||||||||||||||||||||| Sbjct: 85896 ggcgtcgtctgcgccgtcttctc 85918 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||| | ||||||||||| ||| |||| ||||||||||| |||||| | Sbjct: 82711 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 82770 Query: 337 gccgtcgtctgcgcc 351 | |||||| |||||| Sbjct: 82771 ggcgtcgtgtgcgcc 82785 Score = 60.0 bits (30), Expect = 8e-06 Identities = 41/45 (91%) Strand = Plus / Plus Query: 504 cgccacggccctcggggtcacctcctacgtcatgctccgcangca 548 ||||||||| ||||| ||| ||||||||||||||||||||| ||| Sbjct: 76062 cgccacggcgctcggtgtcgcctcctacgtcatgctccgcaggca 76106 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 159 ||||| ||| ||||||| ||||||||||||||| | ||||||||| | ||||||||| Sbjct: 93473 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcact 93529 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 91 tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 145 ||||| ||||||||||| || ||||| || ||||||||||||||| | ||||||| Sbjct: 82394 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 82448 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Plus Query: 92 cggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgaggg 146 |||| ||||| ||||||||| |||| || ||||||||||| ||| | |||||||| Sbjct: 85521 cggtggttgggtcccttgggttgctcagcgccatcctgggattcgccgccgaggg 85575 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 506 ccacggccctcggggtcacctcctacgtcatgctccgc 543 |||||||||||||| | || |||||| ||||||||||| Sbjct: 86153 ccacggccctcgggatgacatcctacttcatgctccgc 86190
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 6e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 211 gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 270 ||||||||||| || || |||||||| ||||||||||| | || ||| || | || || Sbjct: 21115072 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 21115131 Query: 271 gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 330 | || |||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 21115132 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 21115191 Query: 331 atcattgccgtcgtctgcgccgtcttctcatgg 363 ||| | | |||||||||||||||| |||||||| Sbjct: 21115192 atcgtcggcgtcgtctgcgccgtcatctcatgg 21115224 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | Sbjct: 21162206 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 21162265 Query: 337 gccgtcgtctgcgccgtcttctcatgg 363 | | |||||||||||||| |||||||| Sbjct: 21162266 ggcatcgtctgcgccgtcgtctcatgg 21162292 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||| | |||||||||||||||||||| ||||||||||| |||||| | Sbjct: 21106971 ggcggctgctgcgggtgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 21107030 Query: 337 gccgtcgtctgcgccgtcttctc 359 | ||||||||||||||||||||| Sbjct: 21107031 ggcgtcgtctgcgccgtcttctc 21107053 Score = 69.9 bits (35), Expect = 8e-09 Identities = 140/175 (80%) Strand = Plus / Plus Query: 189 gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 248 |||| ||||||| || ||||||||| || ||| ||||| |||||||| |||||||| | Sbjct: 21156451 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 21156510 Query: 249 cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 308 |||| |||||| | || ||| || |||||||||||||||| ||||||||||| | Sbjct: 21156511 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 21156570 Query: 309 catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 363 |||||| || |||||||| ||||| || | |||| ||||||| ||| | |||||| Sbjct: 21156571 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatgg 21156625 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 104 cccttggggtgctgagtgccatcctggggttctcagccgagggcac 149 |||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 21161894 ccctgggggtgctgagcgccatcctggggttctccgccgagggcac 21161939 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 159 ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| ||||| Sbjct: 21156252 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 21156308 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||| | ||||||||||| ||| |||| ||||||||||| |||||| | Sbjct: 21103846 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 21103905 Query: 337 gccgtcgtctgcgcc 351 | |||||| |||||| Sbjct: 21103906 ggcgtcgtgtgcgcc 21103920 Score = 60.0 bits (30), Expect = 8e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 450 gtgctatgttctcaaagacggcatcttcgccggtggcgccgtgctcacgctggtcgccac 509 |||||| || ||||| |||||||||||||| || | |||||||| | || | |||||| Sbjct: 21162580 gtgctacgtcctcaaggacggcatcttcgcgggcgcggccgtgctggccctcgccgccac 21162639 Query: 510 ggccctcggggtcacctcctacgtcatgctccgc 543 ||| |||||| || |||||||||||| ||||||| Sbjct: 21162640 ggcgctcgggatcgcctcctacgtcacgctccgc 21162673 Score = 60.0 bits (30), Expect = 8e-06 Identities = 41/45 (91%) Strand = Plus / Plus Query: 504 cgccacggccctcggggtcacctcctacgtcatgctccgcangca 548 ||||||||| ||||| ||| ||||||||||||||||||||| ||| Sbjct: 21097197 cgccacggcgctcggtgtcgcctcctacgtcatgctccgcaggca 21097241 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 159 ||||| ||| ||||||| ||||||||||||||| | ||||||||| | ||||||||| Sbjct: 21114608 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcact 21114664 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 308 ccatcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 363 ||||||| || |||||||| |||||||| | |||||||||||||||| | |||||| Sbjct: 21151077 ccatcccgtcggagaccaagcggatcatcggcgtcgtctgcgccgtcatgtcatgg 21151132 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagg 145 ||||| ||| ||||||| ||||||||||||||||| ||||||| Sbjct: 21150752 tccctggggttgctgagcgccatcctggggttctccgccgagg 21150794 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 91 tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 145 ||||| ||||||||||| || ||||| || ||||||||||||||| | ||||||| Sbjct: 21103529 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 21103583 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Plus Query: 92 cggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgaggg 146 |||| ||||| ||||||||| |||| || ||||||||||| ||| | |||||||| Sbjct: 21106656 cggtggttgggtcccttgggttgctcagcgccatcctgggattcgccgccgaggg 21106710 Score = 44.1 bits (22), Expect = 0.48 Identities = 30/33 (90%) Strand = Plus / Plus Query: 516 cggggtcacctcctacgtcatgctccgcangca 548 |||| |||| ||||||||||||||||||| ||| Sbjct: 21156849 cgggatcacgtcctacgtcatgctccgcaggca 21156881 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 505 gccacggccctcggggtcacctcctacgtcatgctccg 542 |||||||| ||||| |||| ||||||||||||||||| Sbjct: 21151365 gccacggcgttcgggatcacgtcctacgtcatgctccg 21151402 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 506 ccacggccctcggggtcacctcctacgtcatgctccgc 543 |||||||||||||| | || |||||| ||||||||||| Sbjct: 21107288 ccacggccctcgggatgacatcctacttcatgctccgc 21107325 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ctcggggtcacctcctacgt 533 |||||||||||||||||||| Sbjct: 21154078 ctcggggtcacctcctacgt 21154097
>ref|XM_475294.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 738 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | Sbjct: 214 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 273 Query: 337 gccgtcgtctgcgccgtcttctcatggat 365 | | |||||||||||||| |||||||||| Sbjct: 274 ggcatcgtctgcgccgtcgtctcatggat 302 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 104 cccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcactattt 163 |||| ||||||||||| ||||||||||||||||| ||||||||||| ||| ||| ||||| Sbjct: 41 ccctgggggtgctgagcgccatcctggggttctccgccgagggcacaaagatcattattt 100 Query: 164 cggac 168 ||||| Sbjct: 101 cggac 105 Score = 60.0 bits (30), Expect = 8e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 450 gtgctatgttctcaaagacggcatcttcgccggtggcgccgtgctcacgctggtcgccac 509 |||||| || ||||| |||||||||||||| || | |||||||| | || | |||||| Sbjct: 378 gtgctacgtcctcaaggacggcatcttcgcgggcgcggccgtgctggccctcgccgccac 437 Query: 510 ggccctcggggtcacctcctacgtcatgctccgc 543 ||| |||||| || |||||||||||| ||||||| Sbjct: 438 ggcgctcgggatcgcctcctacgtcacgctccgc 471
>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0088F07, complete sequence Length = 139180 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | Sbjct: 42989 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 43048 Query: 337 gccgtcgtctgcgccgtcttctcatgg 363 | | |||||||||||||| |||||||| Sbjct: 43049 ggcatcgtctgcgccgtcgtctcatgg 43075 Score = 69.9 bits (35), Expect = 8e-09 Identities = 140/175 (80%) Strand = Plus / Plus Query: 189 gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 248 |||| ||||||| || ||||||||| || ||| ||||| |||||||| |||||||| | Sbjct: 37234 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 37293 Query: 249 cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 308 |||| |||||| | || ||| || |||||||||||||||| ||||||||||| | Sbjct: 37294 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 37353 Query: 309 catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 363 |||||| || |||||||| ||||| || | |||| ||||||| ||| | |||||| Sbjct: 37354 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatgg 37408 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 104 cccttggggtgctgagtgccatcctggggttctcagccgagggcac 149 |||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 42677 ccctgggggtgctgagcgccatcctggggttctccgccgagggcac 42722 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 159 ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| ||||| Sbjct: 37035 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 37091 Score = 60.0 bits (30), Expect = 8e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 450 gtgctatgttctcaaagacggcatcttcgccggtggcgccgtgctcacgctggtcgccac 509 |||||| || ||||| |||||||||||||| || | |||||||| | || | |||||| Sbjct: 43363 gtgctacgtcctcaaggacggcatcttcgcgggcgcggccgtgctggccctcgccgccac 43422 Query: 510 ggccctcggggtcacctcctacgtcatgctccgc 543 ||| |||||| || |||||||||||| ||||||| Sbjct: 43423 ggcgctcgggatcgcctcctacgtcacgctccgc 43456 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 308 ccatcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 363 ||||||| || |||||||| |||||||| | |||||||||||||||| | |||||| Sbjct: 31860 ccatcccgtcggagaccaagcggatcatcggcgtcgtctgcgccgtcatgtcatgg 31915 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagg 145 ||||| ||| ||||||| ||||||||||||||||| ||||||| Sbjct: 31535 tccctggggttgctgagcgccatcctggggttctccgccgagg 31577 Score = 44.1 bits (22), Expect = 0.48 Identities = 30/33 (90%) Strand = Plus / Plus Query: 516 cggggtcacctcctacgtcatgctccgcangca 548 |||| |||| ||||||||||||||||||| ||| Sbjct: 37632 cgggatcacgtcctacgtcatgctccgcaggca 37664 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 505 gccacggccctcggggtcacctcctacgtcatgctccg 542 |||||||| ||||| |||| ||||||||||||||||| Sbjct: 32148 gccacggcgttcgggatcacgtcctacgtcatgctccg 32185 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ctcggggtcacctcctacgt 533 |||||||||||||||||||| Sbjct: 34861 ctcggggtcacctcctacgt 34880
>ref|XM_475293.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 73.8 bits (37), Expect = 5e-10 Identities = 142/177 (80%) Strand = Plus / Plus Query: 189 gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 248 |||| ||||||| || ||||||||| || ||| ||||| |||||||| |||||||| | Sbjct: 123 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 182 Query: 249 cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 308 |||| |||||| | || ||| || |||||||||||||||| ||||||||||| | Sbjct: 183 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 242 Query: 309 catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatggat 365 |||||| || |||||||| ||||| || | |||| ||||||| ||| | |||||||| Sbjct: 243 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatggat 299 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 103 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 159 ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| ||||| Sbjct: 40 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 96 Score = 44.1 bits (22), Expect = 0.48 Identities = 30/33 (90%) Strand = Plus / Plus Query: 516 cggggtcacctcctacgtcatgctccgcangca 548 |||| |||| ||||||||||||||||||| ||| Sbjct: 420 cgggatcacgtcctacgtcatgctccgcaggca 452
>ref|XM_475287.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 771 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 277 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 336 |||||||||||||| | ||||||||||| ||| |||| ||||||||||| |||||| | Sbjct: 259 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 318 Query: 337 gccgtcgtctgcgcc 351 | |||||| |||||| Sbjct: 319 ggcgtcgtgtgcgcc 333 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 91 tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 145 ||||| ||||||||||| || ||||| || ||||||||||||||| | ||||||| Sbjct: 112 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 166
>ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 60.0 bits (30), Expect = 8e-06 Identities = 41/45 (91%) Strand = Plus / Plus Query: 504 cgccacggccctcggggtcacctcctacgtcatgctccgcangca 548 ||||||||| ||||| ||| ||||||||||||||||||||| ||| Sbjct: 447 cgccacggcgctcggtgtcgcctcctacgtcatgctccgcaggca 491 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 94 gtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaag 153 ||||| || ||||| ||| ||||||| ||||| ||||| ||| | |||||| |||| ||| Sbjct: 31 gtcgtcgggtccctggggttgctgagcgccattctgggattcgccgccgagagcacaaag 90 Query: 154 ctcactatttcggac 168 |||||||||||||| Sbjct: 91 atcactatttcggac 105
>gb|AY022137.1| Oryza sativa microsatellite MRG4462 containing (TC)X19, closest to marker S1736, genomic sequence Length = 238 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 91 tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 145 ||||| ||||||||||| || ||||| || ||||||||||||||| | ||||||| Sbjct: 1 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 55
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 gttgttggcggctgctgcggct 292 |||||||||||||||||||||| Sbjct: 198139 gttgttggcggctgctgcggct 198160
>gb|AE009609.1| Brucella melitensis 16M chromosome I, section 166 of 195 of the complete sequence Length = 10580 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 gttgttggcggctgctgcggct 292 |||||||||||||||||||||| Sbjct: 9519 gttgttggcggctgctgcggct 9498
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 gttgttggcggctgctgcggct 292 |||||||||||||||||||||| Sbjct: 199502 gttgttggcggctgctgcggct 199523
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 gttgttggcggctgctgcggct 292 |||||||||||||||||||||| Sbjct: 195869 gttgttggcggctgctgcggct 195890
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 468 cggcatcttcgccggtggcgc 488 ||||||||||||||||||||| Sbjct: 2524973 cggcatcttcgccggtggcgc 2524953
>ref|XM_362740.1| Magnaporthe grisea 70-15 hypothetical protein (MG08308.4) partial mRNA Length = 846 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 gttgttggcggctgctgcggc 291 ||||||||||||||||||||| Sbjct: 567 gttgttggcggctgctgcggc 547
>gb|AC022182.8| Homo sapiens chromosome 8, clone RP11-174G1, complete sequence Length = 172420 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 ggatcagaggatgatcatctc 86 ||||||||||||||||||||| Sbjct: 156448 ggatcagaggatgatcatctc 156468
>gb|AF020803.2|AF020803 Homo sapiens chromosome 21 clone cosmid Q37D2 map 21q22.2, complete sequence Length = 45034 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tgctgagtgccatcctggggt 133 ||||||||||||||||||||| Sbjct: 9740 tgctgagtgccatcctggggt 9720
>gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clone P169K17 map 21q22.2, complete sequence Length = 179544 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tgctgagtgccatcctggggt 133 ||||||||||||||||||||| Sbjct: 154779 tgctgagtgccatcctggggt 154759
>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tgctgagtgccatcctggggt 133 ||||||||||||||||||||| Sbjct: 28580 tgctgagtgccatcctggggt 28560
>dbj|BS000198.1| Pan troglodytes chromosome 22 clone:RP43-091A22, map 22, complete sequences Length = 181880 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tgctgagtgccatcctggggt 133 ||||||||||||||||||||| Sbjct: 130016 tgctgagtgccatcctggggt 129996
>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22; segment 1/3 Length = 323000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tgctgagtgccatcctggggt 133 ||||||||||||||||||||| Sbjct: 154447 tgctgagtgccatcctggggt 154467
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcgcgctgctggtgtccggc 402 |||||||||||||||||||| Sbjct: 3199190 tcgcgctgctggtgtccggc 3199171
>gb|AY781336.1| Danio rerio talin 1 (tln1) mRNA, complete cds Length = 7938 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tggcggctgctgcggcttgt 295 |||||||||||||||||||| Sbjct: 2917 tggcggctgctgcggcttgt 2898
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tcgcgttcgcgctgctggtgtccg 400 ||||||||||||||||| |||||| Sbjct: 1753908 tcgcgttcgcgctgctgctgtccg 1753931
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tcggggtgtgcgcggcgatc 240 |||||||||||||||||||| Sbjct: 806146 tcggggtgtgcgcggcgatc 806165
>ref|XM_843843.1| PREDICTED: Canis familiaris similar to lipocalin 8 (LOC607230), mRNA Length = 643 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tggggtgctgagtgccatcctggg 131 |||| ||||||||||||||||||| Sbjct: 69 tgggctgctgagtgccatcctggg 92
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcgcgctgctggtgtccggc 402 |||||||||||||||||||| Sbjct: 239374 tcgcgctgctggtgtccggc 239355
>gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, complete sequence Length = 201073 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ggactgcaacacaaaagagg 30 |||||||||||||||||||| Sbjct: 132425 ggactgcaacacaaaagagg 132406
>ref|NM_001009560.1| Danio rerio talin 1 (tln1), mRNA Length = 7938 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tggcggctgctgcggcttgt 295 |||||||||||||||||||| Sbjct: 2917 tggcggctgctgcggcttgt 2898
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 tcgccggtggcgccgtgctcacgc 499 ||||||||||||||| |||||||| Sbjct: 1344393 tcgccggtggcgccgcgctcacgc 1344416
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tcgcgttcgcgctgctggtgtccg 400 ||||||||||||||||| |||||| Sbjct: 3088801 tcgcgttcgcgctgctgctgtccg 3088824
>gb|AC097273.3| Genomic sequence for Mus musculus, clone RP23-118N13, complete sequence Length = 211657 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tgccacagtggactgcaaca 21 |||||||||||||||||||| Sbjct: 97582 tgccacagtggactgcaaca 97601
>emb|BX323809.14| Zebrafish DNA sequence from clone DKEY-42J10 in linkage group 10, complete sequence Length = 194108 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tggcggctgctgcggcttgt 295 |||||||||||||||||||| Sbjct: 146672 tggcggctgctgcggcttgt 146653
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tcgcgttcgcgctgctggtgtccg 400 ||||||||||||||||| |||||| Sbjct: 2237427 tcgcgttcgcgctgctgctgtccg 2237450
>gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone rp23-20g17, complete sequence Length = 232241 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tgccacagtggactgcaaca 21 |||||||||||||||||||| Sbjct: 33871 tgccacagtggactgcaaca 33852
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gctcggggtgtgcgcggcga 238 |||||||||||||||||||| Sbjct: 7016173 gctcggggtgtgcgcggcga 7016154
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcgcgctgctggtgtccggc 402 |||||||||||||||||||| Sbjct: 3187853 tcgcgctgctggtgtccggc 3187834
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 acggcatcttcgccggtggcgccg 490 ||||||||||||| |||||||||| Sbjct: 1304201 acggcatcttcgcgggtggcgccg 1304178
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttgttggcggctgctgcggc 291 |||||||||||||||||||| Sbjct: 4342610 ttgttggcggctgctgcggc 4342629
>gb|AC102393.8| Mus musculus chromosome 18, clone RP24-125H9, complete sequence Length = 152240 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggactgcaacacaaaagagg 30 |||||||||||||||||||| Sbjct: 79380 ggactgcaacacaaaagagg 79399
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcgcgctgctggtgtccggc 402 |||||||||||||||||||| Sbjct: 2925344 tcgcgctgctggtgtccggc 2925325
>gb|AC023481.6| Homo sapiens chromosome 3 clone RP11-424H6 map 3p, complete sequence Length = 184065 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gtgtgcgtgtacccagataacccc 210 ||||||||||| |||||||||||| Sbjct: 177483 gtgtgcgtgtagccagataacccc 177506
>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence Length = 151927 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gtgtgcgtgtacccagataacccc 210 ||||||||||| |||||||||||| Sbjct: 103953 gtgtgcgtgtagccagataacccc 103930
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcgcgctgctggtgtccggc 402 |||||||||||||||||||| Sbjct: 3364384 tcgcgctgctggtgtccggc 3364365
>dbj|AB022645.1| Magnetospirillum magnetotacticum hosA gene for heme o synthase, complete cds Length = 867 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 tccgagaccaaccggatcat 335 |||||||||||||||||||| Sbjct: 616 tccgagaccaaccggatcat 635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,957,636 Number of Sequences: 3902068 Number of extensions: 2957636 Number of successful extensions: 57347 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56338 Number of HSP's gapped (non-prelim): 1006 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
