ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart16f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 103 2e-22
2VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 99 7e-21
3S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetati... 99 9e-21
4VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetati... 99 9e-21
5VSP2_ARATH (O82122) Vegetative storage protein 2 precursor 90 4e-18
6VSP1_ARATH (O49195) Vegetative storage protein 1 precursor 87 3e-17
7CYF_PSINU (Q8WI07) Apocytochrome f precursor 34 0.28
8MMPL8_MYCTU (O07800) Putative membrane protein mmpL8 31 2.4
9HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane prote... 30 3.1
10RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2... 30 4.0
11RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2... 29 6.9
12PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (... 29 9.0

>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score =  103 bits (258), Expect = 2e-22
 Identities = 45/105 (42%), Positives = 66/105 (62%)
 Frame = +3

Query: 210 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 389
           C +W   VE +N+  WKT+P  C  YV  YM+G  ++ +   V D+A  Y  S+ L  +G
Sbjct: 43  CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102

Query: 390 KEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 524
           ++VW+FD+DET LSNLPYY+ H +G   F+   F+ +V  G+APA
Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPA 147



to top

>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
 Frame = +3

Query: 168 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 344
           LR   G G+ +  V C S+ L VEAHN+R +KT+P  C      Y+ G  FR DSK V  
Sbjct: 28  LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87

Query: 345 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 524
           QA  Y    ++  N  ++++F ID T LSN+PYY KHG+G   FN T ++ +V +G APA
Sbjct: 88  QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145



to top

>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 48/107 (44%), Positives = 67/107 (62%)
 Frame = +3

Query: 204 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 383
           V C SW L VEAHN+  ++T+P  C      Y+ G  +R DSK V  QA  Y   L++  
Sbjct: 37  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94

Query: 384 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 524
           + K+ +VF ID T LSN+PYY KHG+G   FN+T ++ +V +G+APA
Sbjct: 95  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPA 141



to top

>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 48/107 (44%), Positives = 67/107 (62%)
 Frame = +3

Query: 204 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 383
           V C SW L VEAHN+  ++T+P  C      Y+ G  +R DSK V  QA  Y   L++  
Sbjct: 40  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97

Query: 384 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 524
           + K+ +VF ID T LSN+PYY KHG+G   FN+T ++ +V +G+APA
Sbjct: 98  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPA 144



to top

>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 210 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 386
           C SW LGVE  N+ D+ TVPA+C+ YV  Y++ S  ++ DSK V  +A  Y   L L  +
Sbjct: 52  CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111

Query: 387 GKEVWVFDIDETTLSNLPYYAKHGFG 464
              VW+FD+D+T LS++PYYAK+G+G
Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYG 137



to top

>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 210 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 386
           C SW LGVE  N+ ++ TVPA+C+ YV  Y++ S  ++ DSK V  +A  Y   L L  +
Sbjct: 57  CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116

Query: 387 GKEVWVFDIDETTLSNLPYYAKHGFG 464
              VW+FD+D+T LS++PYYAK+G+G
Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYG 142



to top

>CYF_PSINU (Q8WI07) Apocytochrome f precursor|
          Length = 321

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 99  VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 269
           V+I +P S     V EAVV  P    ++ +LG+GK  G+   + ++  E   +  +  +P
Sbjct: 66  VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125

Query: 270 ASCEGYVGHYMLGSHFRRDSKVVI 341
           A  +  +G   L  ++R D + +I
Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149



to top

>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8|
          Length = 1089

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 228 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 377
           G+  +N  D KT+PAS E  +G+  L  HF   S ++I + L    S  L
Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465



to top

>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP|
           P4)
          Length = 274

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
 Frame = +3

Query: 300 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAK 452
           +LG ++ +DS     +ALAY          D  K+A   K+  V D+DET L N PY   
Sbjct: 41  VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98

Query: 453 HGFGATPFNATSFNAYV 503
                 PF+   +  +V
Sbjct: 99  QVQNNKPFDGKDWTRWV 115



to top

>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1120

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +3

Query: 153 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 317
           PL+   + ++G+G  A +A DS +  +   N     V   K    + EGY  HY L  ++
Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650

Query: 318 RRDSKVVIDQ 347
           R +    I+Q
Sbjct: 651 RSNQDTCINQ 660



to top

>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1081

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 153 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 245
           PLI   RPL+G+G  A +A DS ++ +   N
Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582



to top

>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase|
           B 3)
          Length = 754

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 162 HALRPLLGSGKHA-GVACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVV 338
           H L  LL S  +  G++  +W++G  A N  DW +V     G    + L       S + 
Sbjct: 209 HGLGGLLDSSTYVVGLSGGNWLVGSLALN--DWLSVGDIVNGKSTIWQLQDSILNPSGMR 266

Query: 339 IDQALAYVDSLKLAGNGKE 395
           ID+ +AY   L  A   KE
Sbjct: 267 IDKTIAYYYGLAQAVQAKE 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,782,029
Number of Sequences: 219361
Number of extensions: 904230
Number of successful extensions: 3046
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3039
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top