ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart16f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein ... 28 7.1
2VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein ... 28 9.2

>VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein 2)|
          (Loop-tail-associated protein) (Loop-tail protein 1)
          Length = 521

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 90 QEHEDQRIRHCSKQRDGAR 34
          ++H D+R RH SK RDG+R
Sbjct: 21 RKHRDRRDRHRSKSRDGSR 39



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>VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein 2)|
          (Strabismus 1) (Loop-tail protein 1 homolog)
          Length = 521

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 90 QEHEDQRIRHCSKQRDGAR 34
          ++H D+R RH SK RDG R
Sbjct: 21 RKHRDRRDRHRSKSRDGGR 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,348,681
Number of Sequences: 219361
Number of extensions: 215049
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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