ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart16f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, com... 46 0.025
2gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone ... 46 0.025
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.098
4dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.098
5dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.098
6gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Sy... 42 0.39
7gb|AC122189.4| Mus musculus BAC clone RP23-36C8 from 1, complete... 40 1.5
8gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, com... 40 1.5
9ref|XM_370512.1| Magnaporthe grisea 70-15 chromosome II hypothet... 38 6.0
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
11dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
12dbj|AP002376.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 6.0

>gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, complete sequence
          Length = 216320

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 69    tcctctggtcctcatgctcttgc 91
             |||||||||||||||||||||||
Sbjct: 49892 tcctctggtcctcatgctcttgc 49914



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>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete
             sequence
          Length = 245536

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 69    tcctctggtcctcatgctcttgc 91
             |||||||||||||||||||||||
Sbjct: 81103 tcctctggtcctcatgctcttgc 81081



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 22       cgagagaagagctcgagctcca 43
                ||||||||||||||||||||||
Sbjct: 12191283 cgagagaagagctcgagctcca 12191262



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>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1759_F09
          Length = 149501

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     cgagagaagagctcgagctcca 43
              ||||||||||||||||||||||
Sbjct: 102742 cgagagaagagctcgagctcca 102721



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>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0564H06
          Length = 146823

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     cgagagaagagctcgagctcca 43
              ||||||||||||||||||||||
Sbjct: 125662 cgagagaagagctcgagctcca 125641



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>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library)
              contains Bmx gene, complete sequence
          Length = 159446

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     tcctctggtcctcatgctctt 89
              |||||||||||||||||||||
Sbjct: 118659 tcctctggtcctcatgctctt 118679



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>gb|AC122189.4| Mus musculus BAC clone RP23-36C8 from 1, complete sequence
          Length = 247309

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     gatcctctggtcctcatgct 86
              ||||||||||||||||||||
Sbjct: 125053 gatcctctggtcctcatgct 125034



 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     gatcctctggtcctcatgct 86
              ||||||||||||||||||||
Sbjct: 125018 gatcctctggtcctcatgct 124999



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>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence
          Length = 212548

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     ctctggtcctcatgctcttg 90
              ||||||||||||||||||||
Sbjct: 111965 ctctggtcctcatgctcttg 111946



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>ref|XM_370512.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
           (MG07009.4) partial mRNA
          Length = 744

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 36  gagctccatcccgctgctt 54
           |||||||||||||||||||
Sbjct: 372 gagctccatcccgctgctt 390



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 35       cgagctccatcccgctgct 53
                |||||||||||||||||||
Sbjct: 18571946 cgagctccatcccgctgct 18571964



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>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1789_D08
          Length = 128673

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     cgagctccatcccgctgct 53
              |||||||||||||||||||
Sbjct: 113085 cgagctccatcccgctgct 113103



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>dbj|AP002376.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-349I16, complete
             sequence
          Length = 161406

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    atcctctggtcctcatgct 86
             |||||||||||||||||||
Sbjct: 89383 atcctctggtcctcatgct 89365


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 758,236
Number of Sequences: 3902068
Number of extensions: 758236
Number of successful extensions: 52158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52075
Number of HSP's gapped (non-prelim): 83
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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