ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart16e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_474445.1| Oryza sativa (japonica cultivar-group), predic... 40 2.1
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
3dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
4tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 2.1
5gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 2.1
6emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 40 2.1
7gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 38 8.1
8ref|XM_581197.2| PREDICTED: Bos taurus similar to Tuberin (Tuber... 38 8.1
9gb|AC116487.14| Mus musculus chromosome 15, clone RP23-428I9, co... 38 8.1
10dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 8.1
11gb|U77606.1|GCU77606 Glomerella cingulata two-component histidin... 38 8.1
12gb|U77605.1|GCU77605 Glomerella cingulata two-component histidin... 38 8.1

>ref|XM_474445.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  gttcatctctatgcccaccgacca 93
           |||||||||| |||||||||||||
Sbjct: 78  gttcatctctctgcccaccgacca 101



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 70       gttcatctctatgcccaccgacca 93
                |||||||||| |||||||||||||
Sbjct: 35228724 gttcatctctctgcccaccgacca 35228701



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>dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132H20, full
           insert sequence
          Length = 1413

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  gttcatctctatgcccaccgacca 93
           |||||||||| |||||||||||||
Sbjct: 181 gttcatctctctgcccaccgacca 204



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>tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx60 gene for
           class III peroxidase 60 precursor, exons 1-3
          Length = 1221

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  gttcatctctatgcccaccgacca 93
           |||||||||| |||||||||||||
Sbjct: 78  gttcatctctctgcccaccgacca 101



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 133     gctcgccttcgacttccacgccga 156
               ||||||| ||||||||||||||||
Sbjct: 7111998 gctcgccgtcgacttccacgccga 7111975



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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    gttcatctctatgcccaccgacca 93
             |||||||||| |||||||||||||
Sbjct: 24569 gttcatctctctgcccaccgacca 24546



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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 63      cctcggcgttcatctctatgccc 85
               |||||||||||||||| ||||||
Sbjct: 1713145 cctcggcgttcatctccatgccc 1713123



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>ref|XM_581197.2| PREDICTED: Bos taurus similar to Tuberin (Tuberous sclerosis 2
            homolog protein) (LOC504985), partial mRNA
          Length = 5686

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 131  gggctcgccttcgacttcc 149
            |||||||||||||||||||
Sbjct: 1993 gggctcgccttcgacttcc 2011



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>gb|AC116487.14| Mus musculus chromosome 15, clone RP23-428I9, complete sequence
          Length = 174945

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    ccgccgtgctgtgcccggc 45
             |||||||||||||||||||
Sbjct: 87647 ccgccgtgctgtgcccggc 87629



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 134     ctcgccttcgacttccacgccga 156
               |||||||||||||||| ||||||
Sbjct: 3474123 ctcgccttcgacttcctcgccga 3474145



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>gb|U77606.1|GCU77606 Glomerella cingulata two-component histidine kinase CHK-1 (chk-1)
            mRNA, complete cds
          Length = 2559

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 139  cttcgacttccacgccgac 157
            |||||||||||||||||||
Sbjct: 2141 cttcgacttccacgccgac 2123



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>gb|U77605.1|GCU77605 Glomerella cingulata two-component histidine kinase CHK-1 (chk-1)
            gene, complete cds
          Length = 3766

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 139  cttcgacttccacgccgac 157
            |||||||||||||||||||
Sbjct: 2960 cttcgacttccacgccgac 2942



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 139 cttcgacttccacgccgac 157
           |||||||||||||||||||
Sbjct: 114 cttcgacttccacgccgac 132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 861,185
Number of Sequences: 3902068
Number of extensions: 861185
Number of successful extensions: 56121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55982
Number of HSP's gapped (non-prelim): 139
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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