Clone Name | bart16e02 |
---|---|
Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 103 bits (258), Expect = 3e-22 Identities = 72/160 (45%), Positives = 74/160 (46%), Gaps = 8/160 (5%) Frame = +1 Query: 100 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 267 MEDERSTQSYQG EA +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 268 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 444 DGEKKETLFSKLHR VID+N Sbjct: 61 KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119 Query: 445 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEKI 555 D E EHVTGLPAP APASVQT HHDTDVVVEKI Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEKI 159
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -1 Query: 172 GPCPSPPPDRPQLPGMTGCSSHPP 101 GPCP PPP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 30.4 bits (67), Expect = 3.5 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -1 Query: 169 PCPSPPPDRPQLPGMTGCSSHPP 101 P P PPP P LPG T S PP Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 96 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 7 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 96 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 7 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,248,359 Number of Sequences: 219361 Number of extensions: 620174 Number of successful extensions: 3228 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3149 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)