ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart16d04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185157.1| Oryza sativa (japonica cultivar-group), mRNA Length = 830 Score = 44.1 bits (22), Expect = 0.41 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 251 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 310 Query: 213 cg 214 || Sbjct: 311 cg 312
>gb|AY553363.1| Elaeis oleifera Bowman-Birk type proteinase inhibitor-like mRNA, partial sequence Length = 448 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtct 186 ||||||| |||||||||| |||||||||||||| Sbjct: 21 gtgctgcaacaagtgcggtgtctgcaccaggtct 54
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.41 Identities = 52/62 (83%) Strand = Plus / Minus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 34263763 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 34263704 Query: 213 cg 214 || Sbjct: 34263703 cg 34263702
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 ccgccctggccgtcgtcgccgt 107 |||||||||||||||||||||| Sbjct: 2737001 ccgccctggccgtcgtcgccgt 2736980
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 ctgctcgccgccctggccgtcg 100 |||||||||||||||||||||| Sbjct: 2659549 ctgctcgccgccctggccgtcg 2659528 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cgccgccctggccgtcgtcg 103 |||||||||||||||||||| Sbjct: 4314871 cgccgccctggccgtcgtcg 4314890
>gb|AF283254.1|AF283254 Mus musculus gap junction protein connexin45 (Gja6) gene, partial cds Length = 4591 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 tttcttttcaggctttccggtt 421 |||||||||||||||||||||| Sbjct: 3482 tttcttttcaggctttccggtt 3503
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.41 Identities = 52/62 (83%) Strand = Plus / Minus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 34354235 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 34354176 Query: 213 cg 214 || Sbjct: 34354175 cg 34354174
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccgtcctg 111 ||||||||||| ||||||| |||||||||| Sbjct: 541091 ctcgccgccctcgccgtcgccgccgtcctg 541120 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gctgctcgccgccctggccg 97 |||||||||||||||||||| Sbjct: 1719940 gctgctcgccgccctggccg 1719959
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 44.1 bits (22), Expect = 0.41 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 71235 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 71294 Query: 213 cg 214 || Sbjct: 71295 cg 71296
>dbj|AK120562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132J02, full insert sequence Length = 877 Score = 44.1 bits (22), Expect = 0.41 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 337 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 396 Query: 213 cg 214 || Sbjct: 397 cg 398
>ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2981 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 703 ctcgccgccatggccgtcgtcgccg 727
>ref|XM_428071.1| PREDICTED: Gallus gallus similar to ligase I (LOC430516), mRNA Length = 2229 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cctggcagcagctctgcccct 128 ||||||||||||||||||||| Sbjct: 106 cctggcagcagctctgcccct 126
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ctggccgtcgtcgccgtcctg 111 ||||||||||||||||||||| Sbjct: 1831773 ctggccgtcgtcgccgtcctg 1831753
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtc 102 ||||||||||||||||||||| Sbjct: 2907 ctcgccgccctggccgtcgtc 2927
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 ccgccctggccgtcgtcgccg 106 ||||||||||||||||||||| Sbjct: 266362 ccgccctggccgtcgtcgccg 266382
>emb|AL645795.3| Zebrafish DNA sequence from clone BUSM1-31B14 in linkage group 6 Contains the hoxa10b, hoxa9b and hoxa2b genes for homeo box proteins, a novel gene for a protein similar to SRC-associated adaptor protein and a CpG island, complete sequence Length = 78000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 tgcttttccagtttcttttca 409 ||||||||||||||||||||| Sbjct: 65309 tgcttttccagtttcttttca 65329
>gb|AC107364.1| Danio rerio, clone -10O19, complete sequence Length = 96880 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 tgcttttccagtttcttttca 409 ||||||||||||||||||||| Sbjct: 83479 tgcttttccagtttcttttca 83459
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 tggccgtcgtcgccgtcctgg 112 ||||||||||||||||||||| Sbjct: 2453981 tggccgtcgtcgccgtcctgg 2453961
>gb|AY866383.1| Pectobacterium carotovorum subsp. carotovorum CasF (casF) and CasB (casB) genes, complete cds Length = 4873 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 299 tcatcaccaacttctgcaacacccgctgc 327 |||||| |||||||||| ||||||||||| Sbjct: 2029 tcatcatcaacttctgcgacacccgctgc 2057
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 tgggtagatgcctagaagaaa 459 ||||||||||||||||||||| Sbjct: 27352458 tgggtagatgcctagaagaaa 27352478
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 5630400 ctcgccgccatggccgtcgtcgccg 5630376
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 58136 ctcgccgccatggccgtcgtcgccg 58112
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 tgggtagatgcctagaagaaa 459 ||||||||||||||||||||| Sbjct: 53985 tgggtagatgcctagaagaaa 54005
>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full insert sequence Length = 6528 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 700 ctcgccgccatggccgtcgtcgccg 724
>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full insert sequence Length = 2981 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 703 ctcgccgccatggccgtcgtcgccg 727
>gb|AC160121.2| Mus musculus BAC clone RP23-402P14 from chromosome 13, complete sequence Length = 183152 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctggcagcagctctgcccc 127 |||||||||||||||||||| Sbjct: 174586 cctggcagcagctctgcccc 174605
>gb|AY320035.2| Bacteriophage VWB, complete genome Length = 49220 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgcc 105 ||||||||||||||||| |||||| Sbjct: 19068 ctcgccgccctggccgtggtcgcc 19091
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ggccccaggtgctgctcgccgccc 91 |||||||||||||||||| ||||| Sbjct: 2671760 ggccccaggtgctgctcgacgccc 2671737
>gb|AC087067.3| Rattus norvegicus strain Brown Norway clone RP31-40H10, complete sequence Length = 178746 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 104290 tagatgcctagaagaaatga 104271
>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 170859 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 29487 tagatgcctagaagaaatga 29506
>emb|AL645944.11| Human DNA sequence from clone RP11-179G8 on chromosome 1, complete sequence Length = 191247 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgattatattggacctcttg 359 |||||||||||||||||||| Sbjct: 53459 tgattatattggacctcttg 53478
>emb|AL645565.3| Human DNA sequence from clone RP11-397M22 on chromosome 9 Contains a CpG island, complete sequence Length = 146309 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 tctgggtagatgcctagaagaaat 460 |||| ||||||||||||||||||| Sbjct: 82389 tctgagtagatgcctagaagaaat 82366
>emb|AL591242.4| Human DNA sequence from clone RP11-446F17 on chromosome 6 Contains the 5' end of the CYP39A1 gene for cytochrome P450 subfamily XXXIX (oxysterol 7 alpha-hydroxylase) polypeptide 1, the gene for uncoupling protein 4 (UCP4), a novel gene, the 3' end of the PLA2G7 gene for phospholipase A2, group VII (platelet-activating factor acetylhydrolase plasma) (PAFAH LDL-PLA2) and two CpG islands, complete sequence Length = 95107 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tagaagaaatgattcttgct 470 |||||||||||||||||||| Sbjct: 66217 tagaagaaatgattcttgct 66236
>gb|AC097257.7| Rattus norvegicus X BAC CH230-180I13 (Children's Hospital Oakland Research Institute) complete sequence Length = 196137 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 180336 tagatgcctagaagaaatga 180355
>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland Research Institute) complete sequence Length = 211584 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 42963 tagatgcctagaagaaatga 42944
>gb|AC087379.4| Homo sapiens chromosome 11, clone RP11-396O20, complete sequence Length = 167699 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctggcagcagctctgcccc 127 |||||||||||||||||||| Sbjct: 56995 cctggcagcagctctgcccc 57014
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gcatctttatctgggtagat 447 |||||||||||||||||||| Sbjct: 3165396 gcatctttatctgggtagat 3165377
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ggccccaggtgctgctcgccgccc 91 |||||||||||||||||| ||||| Sbjct: 249590 ggccccaggtgctgctcgacgccc 249567
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 71 cccaggtgctgctcgccgccctggccgt 98 ||||||||| || ||||||||||||||| Sbjct: 125833 cccaggtgcagcgcgccgccctggccgt 125860
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ggccccaggtgctgctcgccgccc 91 |||||||||||||||||| ||||| Sbjct: 131500 ggccccaggtgctgctcgacgccc 131477
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aggtgctgctcgccgccctggccg 97 ||||||||||||||| |||||||| Sbjct: 27288 aggtgctgctcgccggcctggccg 27311
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aggtgctgctcgccgccctggccg 97 ||||||||||||||| |||||||| Sbjct: 33895 aggtgctgctcgccggcctggccg 33918
>gb|AC100826.2| Homo sapiens chromosome 15, clone RP11-279F6, complete sequence Length = 168512 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cagcatgaggccccaggtgc 79 |||||||||||||||||||| Sbjct: 25232 cagcatgaggccccaggtgc 25251
>gb|AC108681.2| Homo sapiens 3q BAC RP11-30O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 29347 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cttttccagtttcttttcag 410 |||||||||||||||||||| Sbjct: 26110 cttttccagtttcttttcag 26091
>gb|AC027237.8| Homo sapiens chromosome 15, clone RP11-253M7, complete sequence Length = 157448 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cagcatgaggccccaggtgc 79 |||||||||||||||||||| Sbjct: 1965 cagcatgaggccccaggtgc 1946
>emb|BX323027.8| Zebrafish DNA sequence from clone CH211-242D13, complete sequence Length = 139257 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 taatgcccattagcttgtgctttt 395 ||||| |||||||||||||||||| Sbjct: 85100 taatgtccattagcttgtgctttt 85077
>emb|BX255898.9| Zebrafish DNA sequence from clone CH211-248J19, complete sequence Length = 181912 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 taatgcccattagcttgtgctttt 395 ||||| |||||||||||||||||| Sbjct: 71073 taatgtccattagcttgtgctttt 71096
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 759989 tagatgcctagaagaaatga 759970
>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence Length = 96742 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gctcgccgccctggccgtcg 100 |||||||||||||||||||| Sbjct: 68213 gctcgccgccctggccgtcg 68194
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ggtgctgctcgccgccctgg 94 |||||||||||||||||||| Sbjct: 5030848 ggtgctgctcgccgccctgg 5030867
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ctgcccctcgcccacagcca 140 |||||||||||||||||||| Sbjct: 1161645 ctgcccctcgcccacagcca 1161626
>dbj|AB088420.1| Pseudomonas resinovorans plasmid pCAR1, complete sequence Length = 199035 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgcc 105 |||||||||||||||| ||||||| Sbjct: 196595 ctcgccgccctggccgccgtcgcc 196618
>emb|AL513502.3|HS123J20 Homo sapiens chromosome 9 BAC RP11-123j20, complete sequence Length = 174636 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 tctgggtagatgcctagaagaaat 460 |||| ||||||||||||||||||| Sbjct: 143775 tctgagtagatgcctagaagaaat 143798
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gctgctcgccgccctggccg 97 |||||||||||||||||||| Sbjct: 1175487 gctgctcgccgccctggccg 1175506
>emb|AL355101.2|CNS05TCK Human chromosome 14 DNA sequence BAC R-686H21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164380 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ttgtgcttttccagtttctt 405 |||||||||||||||||||| Sbjct: 129864 ttgtgcttttccagtttctt 129845
>dbj|AP003307.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-95J9, complete sequence Length = 168559 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgattatattggacctcttg 359 |||||||||||||||||||| Sbjct: 54404 tgattatattggacctcttg 54423
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ggtgctgctcgccgccctggccgt 98 ||||||||||| |||||||||||| Sbjct: 4786441 ggtgctgctcggcgccctggccgt 4786418
>gb|AC004045.1|AC004045 Homo sapiens chromosome 4 clone B139M23 map 4q25, complete sequence Length = 106346 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tgattatattggacctcttg 359 |||||||||||||||||||| Sbjct: 67269 tgattatattggacctcttg 67250
>gb|AD000010.1|MSGY222 Mycobacterium tuberculosis sequence from clone y222 Length = 41156 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ggccccaggtgctgctcgccgccc 91 |||||||||||||||||| ||||| Sbjct: 18606 ggccccaggtgctgctcgacgccc 18583
>emb|AL731682.20| Mouse DNA sequence from clone RP23-123F7 on chromosome 2, complete sequence Length = 201290 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gtcctggcagcagctctgcc 125 |||||||||||||||||||| Sbjct: 52534 gtcctggcagcagctctgcc 52515 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,005,960 Number of Sequences: 3902068 Number of extensions: 5005960 Number of successful extensions: 89851 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88397 Number of HSP's gapped (non-prelim): 1454 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
