ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart16d03 |
|---|---|
| Clone Library Name | barley_pub |
>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)| Length = 1428 Score = 33.9 bits (76), Expect = 0.28 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Frame = -3 Query: 358 RWLTGRTCLHPCPS*GCTRQSQR--------CALPSPCPWCTSMPSPSPWCTSMQ 218 R L TC++P C R + CAL + C CTS S WC++M+ Sbjct: 901 RGLKAATCINPLNGSVCERPANHSAKQCRTPCALRTACGECTSSSSECMWCSNMK 955
>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)| Length = 1432 Score = 33.9 bits (76), Expect = 0.28 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Frame = -3 Query: 358 RWLTGRTCLHPCPS*GCTRQSQR--------CALPSPCPWCTSMPSPSPWCTSMQ 218 R L TC++P C R + CAL + C CTS S WC++M+ Sbjct: 905 RGLKAATCINPLNGSVCERPANHSAKQCRTPCALRTACGECTSSSSECMWCSNMK 959
>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)| Length = 1429 Score = 32.7 bits (73), Expect = 0.63 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Frame = -3 Query: 358 RWLTGRTCLHPCPS*GCTRQSQR--------CALPSPCPWCTSMPSPSPWCTSMQ 218 R L TC++P C R + CAL + C CTS S WC++M+ Sbjct: 902 RGLKAATCINPLNGSVCERPANHSAKQCRTPCALRTACGDCTSGSSECMWCSNMK 956
>LYAM3_RAT (P98106) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 768 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Frame = -3 Query: 379 SHTHRQ*RWLTGRTCLHPCP---------S*GCTRQSQRCALPSPCPWCTSMPSPSPWCT 227 SH H + + G TC C + CT + A P C TS+P PS C Sbjct: 524 SHVHGE--FSVGSTCHFSCNEEFELLGSRNVECTVSGRWSAPPPTCKGVTSLPVPSVRCP 581 Query: 226 SMQSPWMLTPSC 191 ++ +P T SC Sbjct: 582 ALTTPGQGTMSC 593
>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 768 Score = 31.2 bits (69), Expect = 1.8 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -3 Query: 310 CTRQSQRCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSC 191 CT + A P C TS+P+P+ C ++ +P T SC Sbjct: 554 CTVSGRWSAPPPTCKGITSLPAPAVRCPALTTPGQGTMSC 593
>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein| Length = 143 Score = 30.8 bits (68), Expect = 2.4 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%) Frame = -3 Query: 325 CPS*GCTRQSQRCALPSPCPWCTSMPSPSP-WCTSMQSPWMLTPSCSFC 182 CP C C P PCP P P P C P CS C Sbjct: 34 CPKSPCCPPKSPCCPPKPCPCPPPCPCPCPATCPCPLKPPCCPQKCSCC 82
>CT012_MACFA (Q9GKS9) Protein C20orf12 homolog| Length = 606 Score = 30.8 bits (68), Expect = 2.4 Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 27/83 (32%) Frame = -3 Query: 337 CLHPCPS*GCTRQSQRCALPSP-----------------CPWCTSM-PSPSPWCTSMQSP 212 CL PCPS R Q C P P C C S+ P +P C ++P Sbjct: 62 CLAPCPSDPFARFCQECGSPVPPIFGCRLPPPEGAQMGLCAECRSLVPMNTPICVVCEAP 121 Query: 211 --WMLTPSCS-------FCRLCG 170 L P S CR CG Sbjct: 122 LALQLQPQASLHLKEKVICRACG 144
>SPR2H_MOUSE (O70559) Small proline-rich protein 2H| Length = 108 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Frame = -3 Query: 337 CLHPCPS*GCTR--QSQRCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSC 191 C PCP CT +C P P P C P P P C P T C Sbjct: 32 CPEPCPPPKCTEPCPPPKCPEPCPPPKCPE-PCPPPKCPEPCPPPKCTEPC 81
>SPR2D_MOUSE (O70555) Small proline-rich protein 2D| Length = 85 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/49 (32%), Positives = 16/49 (32%) Frame = -3 Query: 337 CLHPCPS*GCTRQSQRCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSC 191 C PCP C P PCP P P P C P P C Sbjct: 32 CPEPCPPPKCPEPCPPPKCPEPCP----EPCPPPSCQQKCPPAQPPPPC 76
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 30.4 bits (67), Expect = 3.1 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Frame = -3 Query: 325 CPS*GCTRQSQRCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSC-SFCRLC 173 CP C C P CP T P P+ + P + P C + C C Sbjct: 35 CPKSPCCPPKSPCCTPKVCPCPTPCPCPATCPAACACPCPMKPCCPTKCTCC 86
>SPR2I_MOUSE (O70560) Small proline-rich protein 2I| Length = 76 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/44 (31%), Positives = 16/44 (36%) Frame = -3 Query: 343 RTCLHPCPS*GCTRQSQRCALPSPCPWCTSMPSPSPWCTSMQSP 212 + C PCP C P PCP PS C +Q P Sbjct: 21 KKCPEPCPPPQCPEPCPPPKCPEPCPESCPPPSYQQKCPPVQPP 64
>BCAR3_MOUSE (Q9QZK2) Breast cancer anti-estrogen resistance protein 3| (p130Cas-binding protein AND-34) Length = 820 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = -3 Query: 280 PSPC--PWCTSMPSPSPWCTSMQSPWMLTPS 194 P PC P+ + PSPSPW TS + L P+ Sbjct: 400 PKPCKVPFLKTPPSPSPWLTSEANYCELNPA 430
>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1593 Score = 30.0 bits (66), Expect = 4.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 181 YKSCRMESASKETASRCTKEKVTASRCTTDK 273 +K C ++ K CTK+K++AS C T K Sbjct: 1522 FKKCNQQACKKSADLLCTKDKLSASFCQTLK 1552
>DFR10_MOUSE (Q64263) Defensin-related cryptdin, related sequence 10 precursor| (Cryptdin-related protein 4C-4) (CRS4C) Length = 91 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = -3 Query: 313 GCTRQSQRCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSCSFCR 179 G Q + PCP C S PS PWC + P C C+ Sbjct: 51 GSALQDAAVGMARPCPPCPSCPS-CPWCP-------MCPRCPSCK 87
>CEF10_CHICK (P19336) Protein CEF-10 precursor| Length = 375 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -3 Query: 292 RCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSCSFCRLCGE 167 R AL SPCP P+ +P C ++ C C++C + Sbjct: 19 RLALGSPCPAVCQCPAAAPQCA--PGVGLVPDGCGCCKVCAK 58
>SPR2E_MOUSE (O70556) Small proline-rich protein 2E| Length = 76 Score = 29.3 bits (64), Expect = 7.0 Identities = 14/44 (31%), Positives = 16/44 (36%) Frame = -3 Query: 343 RTCLHPCPS*GCTRQSQRCALPSPCPWCTSMPSPSPWCTSMQSP 212 + C PCP C P PCP PS C +Q P Sbjct: 21 KKCPEPCPHPQCPEPCPPPKCPEPCPEPCPPPSYQQKCPPVQPP 64
>SPR2B_MOUSE (O70554) Small proline-rich protein 2B| Length = 98 Score = 29.3 bits (64), Expect = 7.0 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Frame = -3 Query: 337 CLHPCPS*GCTR--QSQRCALPSPCPWCTSMPSPSPWCTSMQSPWMLTPSC 191 C PCP C +C P P P C P P P C P P C Sbjct: 32 CPEPCPPPVCCEPCPPPKCPEPCPPPVCCE-PCPPPVCCEPCPPQPWQPKC 81
>LIPA_PSEFL (P26504) Lipase precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 449 Score = 28.9 bits (63), Expect = 9.1 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = -3 Query: 274 PCPWCTSMPSPSPWCTSMQSPW 209 P WC+ P+ +P C + + PW Sbjct: 423 PTGWCSRAPTAAPTCATTRRPW 444
>ATS15_HUMAN (Q8TE58) ADAMTS-15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 15) (ADAM-TS 15) (ADAM-TS15) Length = 950 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 13/55 (23%) Frame = -3 Query: 298 SQRCALP-----SPCP--------WCTSMPSPSPWCTSMQSPWMLTPSCSFCRLC 173 SQ+C L PCP WCT C + PW SC +LC Sbjct: 445 SQQCELAFGVGSKPCPYMQYCTKLWCTGKAKGQMVCQTRHFPWADGTSCGEGKLC 499 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,093,413 Number of Sequences: 219361 Number of extensions: 1536693 Number of successful extensions: 4824 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4354 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4730 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
