ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart16c10 |
|---|---|
| Clone Library Name | barley_pub |
>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 293 Score = 205 bits (521), Expect = 7e-53 Identities = 105/139 (75%), Positives = 118/139 (84%), Gaps = 2/139 (1%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNSDVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSA 298 D LFNLRN FYLGAYQ+AINNS++ L + A ERD +VFRSYIALGSYQLVISEID SA Sbjct: 9 DHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESA 68 Query: 299 ATSLQAVKLLALYLT--GDKEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEAL 472 AT LQAVKLLA+YL+ +KE ISSLKEWL+DS IG+N LRLIAGIIFMHE+DYNE L Sbjct: 69 ATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETL 128 Query: 473 KHTHTGGTLDLHALNVQIF 529 KHTH GGT+DL+ALNVQIF Sbjct: 129 KHTHAGGTMDLYALNVQIF 147
>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) (LDLF) Length = 307 Score = 89.7 bits (221), Expect = 4e-18 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 3/139 (2%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSS 295 D LF+++N FY+G+YQ IN + L + D ERDV ++R+YIA Y +V+ EI S Sbjct: 16 DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPS 75 Query: 296 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEA 469 +A LQAV++ A YL + ++ + L +S S +N L+A ++ H+Q+ + A Sbjct: 76 SAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAA 135 Query: 470 LKHTHTGGTLDLHALNVQI 526 L+ H G +L+ A+ +QI Sbjct: 136 LRTLHQGDSLECMAMTIQI 154
>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 307 Score = 88.2 bits (217), Expect = 1e-17 Identities = 49/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSS 295 D LF+++N FY+G+YQ IN + L + + ERDV ++R+Y+A + +V+ EI S Sbjct: 16 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPS 75 Query: 296 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEA 469 +A LQAV++ A YL + ++ ++ L +S S +N L+A I++H+Q+ + A Sbjct: 76 SAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAA 135 Query: 470 LKHTHTGGTLDLHALNVQI 526 L+ H G +L+ A+ VQI Sbjct: 136 LRALHQGDSLECTAMTVQI 154
>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 307 Score = 87.8 bits (216), Expect = 2e-17 Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 3/139 (2%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSS 295 D LF+++N FY+G+YQ IN + L + + ERDV ++R+Y+A Y +V+ EI S Sbjct: 16 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPS 75 Query: 296 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEA 469 +A LQAV++ A YL + ++ + L +S S +N L+A I+ H+Q+ + A Sbjct: 76 SAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 135 Query: 470 LKHTHTGGTLDLHALNVQI 526 L+ H G L+ A+ +QI Sbjct: 136 LRTLHQGDGLECMAMTIQI 154
>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 307 Score = 86.7 bits (213), Expect = 4e-17 Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 3/139 (2%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNSD-VPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSS 295 D LF+++N FY+G+YQ IN + V + ERDV ++R+Y+A Y +V+ EI S Sbjct: 16 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 75 Query: 296 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEA 469 +A LQAV++ A YL ++ ++ L +S S +N L+A I+ ++Q+ + A Sbjct: 76 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 135 Query: 470 LKHTHTGGTLDLHALNVQI 526 L+ H G +L+ A+ VQI Sbjct: 136 LRTLHQGDSLECMAMTVQI 154
>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 292 Score = 47.4 bits (111), Expect = 2e-05 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNS-DVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSS 295 D LF++RN F+LG+YQS I + + + E+DV ++RSYIA G + + EI ++ Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62 Query: 296 A-ATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGII 439 + L AV+ A + K+ ++ ++E ++ I S L A I+ Sbjct: 63 TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATIL 113
>Y447_TREPA (O83461) Hypothetical protein TP0447 precursor| Length = 374 Score = 33.9 bits (76), Expect = 0.28 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +2 Query: 263 YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLIAGIIF 442 Y L+ S ++ A L A+ L + + ++S L +WL DSA + P L+ G +F Sbjct: 98 YALLKSRGETDACEVLDAIFLT--HAPHVFQNSVSKLLQWLKDSA--AFPEAELLLGKVF 153 Query: 443 MHEQDYNEALKH 478 E +Y +AL+H Sbjct: 154 EGEGEYAQALQH 165
>TTC5_RAT (Q5BK48) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)| Length = 440 Score = 30.0 bits (66), Expect = 4.1 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Frame = +2 Query: 203 ADAAAERDVIVFRSYIALGS-YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 379 A A + DV+ RS+ LG+ Y + + S QA L+ Y +K Sbjct: 168 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA---LSAYAQAEKV-------- 216 Query: 380 WLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHTGGTLD 502 D SNP L L + +E+ Y EAL+ TLD Sbjct: 217 ---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAATLD 254
>YIT4_YEAST (P40570) Hypothetical protein YIR014W| Length = 242 Score = 30.0 bits (66), Expect = 4.1 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = +2 Query: 266 QLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLK 376 Q+VI I+ S ++SLQ VKL+ L ++EGA++ LK Sbjct: 165 QIVI--INGSLSSSLQNVKLIVKELNAEEEGALNILK 199
>GP6D_CHLPS (Q46264) Virulence plasmid protein pGP6-D| Length = 246 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = +2 Query: 230 IVFRS----YIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAI 364 +VFR+ Y ALG Y+L IS D + + Q++ YL ++G++ Sbjct: 112 LVFRTKSSAYNALGYYELFISLPDKNTKSLFQSIPYKTAYLLASRKGSV 160
>DPO3A_MYCLE (Q9X7F0) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1177 Score = 29.6 bits (65), Expect = 5.3 Identities = 32/105 (30%), Positives = 48/105 (45%) Frame = +2 Query: 119 DLLFNLRNLFYLGAYQSAINNSDVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSA 298 DL + +F+ Y S +D+ DA V+V IAL + QLV+ + + Sbjct: 1044 DLTGGIEVMFFPHTYSSY--GADIID-DAVVLVNAKVVVRDDRIALIANQLVVPDFSNVQ 1100 Query: 299 ATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLIAG 433 AV LL T DK +++LK+ L+ S LRLI+G Sbjct: 1101 EDRPLAVSLLTRQCTFDK---VNALKQVLARHPGTSQVHLRLISG 1142
>DXS_BUCAI (P57536) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 608 Score = 28.9 bits (63), Expect = 9.1 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = +2 Query: 209 AAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQ------AVKLLALYLTGDKEGAISS 370 A AE+ + F + +A+ Y+ V+S + + A++ L++ D+ G + + Sbjct: 354 AIAEQHAVTFAAGLAISGYKPVVSIYSTFFQRAYDQLIHDIALQKLSVLFAVDRAGIVGN 413 Query: 371 LKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHTG 490 + + + LR I GI+ M + NE + +TG Sbjct: 414 --DGQTHQGVFDLAYLRCIPGIVIMTPSNENECRQMLYTG 451 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,402,502 Number of Sequences: 219361 Number of extensions: 907701 Number of successful extensions: 2938 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2924 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
