ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart16c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 226 bits (114), Expect = 6e-56 Identities = 353/429 (82%), Gaps = 9/429 (2%) Strand = Plus / Minus Query: 134 gccgcacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctgga 193 |||||||||||||| ||||| | |||||| ||| ||||| |||||||| || || | || Sbjct: 4475645 gccgcacccgctcgccggcgcggaggtccagctcaccgtgttcgaccgggcggcgttcga 4475586 Query: 194 catcttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcag 253 | | | ||| |||| ||||||||| |||| |||||||||||||| |||||||| ||| Sbjct: 4475585 cctgtacgtacccagcgtgctcgcgtaccgggcgccggcgccgtcgaacgaggcgatcaa 4475526 Query: 254 ggaagggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcga 313 ||| || ||||||| |||||||||| ||||||||||||| || || ||||||||| |||| Sbjct: 4475525 ggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggccgcctcgccgtcga 4475466 Query: 314 cgacctcggccggcgcttcctccacgtgaacaacgagggcgtgctcctgatcgaggccac 373 | ||| |||||| |||||||||||||||||| || ||||||||||| | |||||||||| Sbjct: 4475465 ccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctcgtcgtcgaggccac 4475406 Query: 374 cgtc-ccg--gccgacctagcggacgtgctcgtcga---cggccg---catggccgctgg 424 |||| || |||||||||| |||||||||| | | |||||| ||||||| | | Sbjct: 4475405 cgtcgacggcgccgacctagacgacgtgctcgccaacagcggccgcgccatggccaccga 4475346 Query: 425 cgtcgacgacctctacccggcgataccggaggagaacattggggcggcgctgctgcagat 484 ||||| |||||||||||| ||| | |||||||| ||| | || || |||||||||||| | Sbjct: 4475345 cgtcgccgacctctaccccgcgttgccggaggacaacgtcggcgccgcgctgctgcaggt 4475286 Query: 485 ccagctcaacaggtacaagtgcggcggcctcgtggtcggcataagctgccaccaccacac 544 ||||| | |||||| ||||||||||||||| ||||||| | ||||||||||||||| Sbjct: 4475285 gaagctcgtccggtacaggtgcggcggcctcgtcgtcggcagcatctgccaccaccacac 4475226 Query: 545 cgccgacgg 553 ||||||||| Sbjct: 4475225 cgccgacgg 4475217
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 226 bits (114), Expect = 6e-56 Identities = 353/429 (82%), Gaps = 9/429 (2%) Strand = Plus / Minus Query: 134 gccgcacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctgga 193 |||||||||||||| ||||| | |||||| ||| ||||| |||||||| || || | || Sbjct: 4475760 gccgcacccgctcgccggcgcggaggtccagctcaccgtgttcgaccgggcggcgttcga 4475701 Query: 194 catcttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcag 253 | | | ||| |||| ||||||||| |||| |||||||||||||| |||||||| ||| Sbjct: 4475700 cctgtacgtacccagcgtgctcgcgtaccgggcgccggcgccgtcgaacgaggcgatcaa 4475641 Query: 254 ggaagggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcga 313 ||| || ||||||| |||||||||| ||||||||||||| || || ||||||||| |||| Sbjct: 4475640 ggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggccgcctcgccgtcga 4475581 Query: 314 cgacctcggccggcgcttcctccacgtgaacaacgagggcgtgctcctgatcgaggccac 373 | ||| |||||| |||||||||||||||||| || ||||||||||| | |||||||||| Sbjct: 4475580 ccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctcgtcgtcgaggccac 4475521 Query: 374 cgtc-ccg--gccgacctagcggacgtgctcgtcga---cggccg---catggccgctgg 424 |||| || |||||||||| |||||||||| | | |||||| ||||||| | | Sbjct: 4475520 cgtcgacggcgccgacctagacgacgtgctcgccaacagcggccgcgccatggccaccga 4475461 Query: 425 cgtcgacgacctctacccggcgataccggaggagaacattggggcggcgctgctgcagat 484 ||||| |||||||||||| ||| | |||||||| ||| | || || |||||||||||| | Sbjct: 4475460 cgtcgccgacctctaccccgcgttgccggaggacaacgtcggcgccgcgctgctgcaggt 4475401 Query: 485 ccagctcaacaggtacaagtgcggcggcctcgtggtcggcataagctgccaccaccacac 544 ||||| | |||||| ||||||||||||||| ||||||| | ||||||||||||||| Sbjct: 4475400 gaagctcgtccggtacaggtgcggcggcctcgtcgtcggcagcatctgccaccaccacac 4475341 Query: 545 cgccgacgg 553 ||||||||| Sbjct: 4475340 cgccgacgg 4475332
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 226 bits (114), Expect = 6e-56 Identities = 353/429 (82%), Gaps = 9/429 (2%) Strand = Plus / Minus Query: 134 gccgcacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctgga 193 |||||||||||||| ||||| | |||||| ||| ||||| |||||||| || || | || Sbjct: 80937 gccgcacccgctcgccggcgcggaggtccagctcaccgtgttcgaccgggcggcgttcga 80878 Query: 194 catcttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcag 253 | | | ||| |||| ||||||||| |||| |||||||||||||| |||||||| ||| Sbjct: 80877 cctgtacgtacccagcgtgctcgcgtaccgggcgccggcgccgtcgaacgaggcgatcaa 80818 Query: 254 ggaagggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcga 313 ||| || ||||||| |||||||||| ||||||||||||| || || ||||||||| |||| Sbjct: 80817 ggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggccgcctcgccgtcga 80758 Query: 314 cgacctcggccggcgcttcctccacgtgaacaacgagggcgtgctcctgatcgaggccac 373 | ||| |||||| |||||||||||||||||| || ||||||||||| | |||||||||| Sbjct: 80757 ccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctcgtcgtcgaggccac 80698 Query: 374 cgtc-ccg--gccgacctagcggacgtgctcgtcga---cggccg---catggccgctgg 424 |||| || |||||||||| |||||||||| | | |||||| ||||||| | | Sbjct: 80697 cgtcgacggcgccgacctagacgacgtgctcgccaacagcggccgcgccatggccaccga 80638 Query: 425 cgtcgacgacctctacccggcgataccggaggagaacattggggcggcgctgctgcagat 484 ||||| |||||||||||| ||| | |||||||| ||| | || || |||||||||||| | Sbjct: 80637 cgtcgccgacctctaccccgcgttgccggaggacaacgtcggcgccgcgctgctgcaggt 80578 Query: 485 ccagctcaacaggtacaagtgcggcggcctcgtggtcggcataagctgccaccaccacac 544 ||||| | |||||| ||||||||||||||| ||||||| | ||||||||||||||| Sbjct: 80577 gaagctcgtccggtacaggtgcggcggcctcgtcgtcggcagcatctgccaccaccacac 80518 Query: 545 cgccgacgg 553 ||||||||| Sbjct: 80517 cgccgacgg 80509
>dbj|AK108939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B05, full insert sequence Length = 1965 Score = 226 bits (114), Expect = 6e-56 Identities = 353/429 (82%), Gaps = 9/429 (2%) Strand = Plus / Plus Query: 134 gccgcacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctgga 193 |||||||||||||| ||||| | |||||| ||| ||||| |||||||| || || | || Sbjct: 76 gccgcacccgctcgccggcgcggaggtccagctcaccgtgttcgaccgggcggcgttcga 135 Query: 194 catcttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcag 253 | | | ||| |||| ||||||||| |||| |||||||||||||| |||||||| ||| Sbjct: 136 cctgtacgtacccagcgtgctcgcgtaccgggcgccggcgccgtcgaacgaggcgatcaa 195 Query: 254 ggaagggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcga 313 ||| || ||||||| |||||||||| ||||||||||||| || || ||||||||| |||| Sbjct: 196 ggagggcctcctcagggccgtcgcggcgtaccctcacctcgccggccgcctcgccgtcga 255 Query: 314 cgacctcggccggcgcttcctccacgtgaacaacgagggcgtgctcctgatcgaggccac 373 | ||| |||||| |||||||||||||||||| || ||||||||||| | |||||||||| Sbjct: 256 ccaccacggccgccgcttcctccacgtgaacgaccagggcgtgctcgtcgtcgaggccac 315 Query: 374 cgtc-ccg--gccgacctagcggacgtgctcgtcga---cggccg---catggccgctgg 424 |||| || |||||||||| |||||||||| | | |||||| ||||||| | | Sbjct: 316 cgtcgacggcgccgacctagacgacgtgctcgccaacagcggccgcgccatggccaccga 375 Query: 425 cgtcgacgacctctacccggcgataccggaggagaacattggggcggcgctgctgcagat 484 ||||| |||||||||||| ||| | |||||||| ||| | || || |||||||||||| | Sbjct: 376 cgtcgccgacctctaccccgcgttgccggaggacaacgtcggcgccgcgctgctgcaggt 435 Query: 485 ccagctcaacaggtacaagtgcggcggcctcgtggtcggcataagctgccaccaccacac 544 ||||| | |||||| ||||||||||||||| ||||||| | ||||||||||||||| Sbjct: 436 gaagctcgtccggtacaggtgcggcggcctcgtcgtcggcagcatctgccaccaccacac 495 Query: 545 cgccgacgg 553 ||||||||| Sbjct: 496 cgccgacgg 504
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 133 bits (67), Expect = 7e-28 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgt--acgccgt-gccgcacccgctc 146 |||||||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||| Sbjct: 122814 atggagatcacgagcagcgcgatgctgaagccggcgccgacgccgacgccgcacccgctc 122873 Query: 147 gtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtcccc 206 | |||||||||||| || || |||| ||| |||||||| ||| | ||| ||||||||||| Sbjct: 122874 gccggcgagaaggttcccctcaccgcctttgaccgcgcggccttcgacgtcttcgtcccc 122933 Query: 207 accgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaagggctcctc 266 | ||| ||||||||| ||||||||||||||||| |||||| ||| |||||| |||| Sbjct: 122934 atggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtcaaggaaggcctccgg 122993 Query: 267 aaggccgtcgcgccgtaccctc 288 | ||||||||| ||||||||| Sbjct: 122994 atggccgtcgccgcgtaccctc 123015 Score = 117 bits (59), Expect = 4e-23 Identities = 146/175 (83%) Strand = Plus / Minus Query: 138 cacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatc 197 |||||||||| ||||||||||||||| || || | |||| ||||||| ||| | |||||| Sbjct: 125175 cacccgctcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatc 125116 Query: 198 ttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaa 257 |||||||||| ||| || |||||| ||||||| || |||||| ||||| ||| ||| Sbjct: 125115 ttcgtccccatggtgttcccctaccgtgcgccggtgctgtccaatgaggcgatcatggag 125056 Query: 258 gggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcg 312 || |||| | ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 125055 ggcctccggatggccgtcgccgcgtaccctcacatggcgggtcgcctcgccctcg 125001 Score = 101 bits (51), Expect = 2e-18 Identities = 134/159 (84%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgtacgccgt-gccgcacccgctcgt 148 |||||||||||||| ||| ||||| ||||| || || ||| || |||||||||||||| Sbjct: 89277 atggagatcacgagcagcgcgatgctgaagacgacg-acgacgccgccgcacccgctcgc 89219 Query: 149 cggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtccccac 208 |||||||||||| || || ||| |||||||||||| ||| | ||| ||||||||||| Sbjct: 89218 cggcgagaaggttcccctctccgccttcgaccgcgcggccttcgacgtcttcgtcccctt 89159 Query: 209 cgtgctcgcctaccccgcgccggcgccgtccaacgaggc 247 ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 89158 ggtgttcgcctaccgcgcgccggcgccgtccagcgaggc 89120 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Minus Query: 465 ggggcggcgctgctgcagatccagctcaacaggtacaagtgcggcggcctcgtggtcggc 524 ||||||||||| |||||| | ||||||| | | | | ||||||||||||||| |||||| Sbjct: 88902 ggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcggc 88843 Query: 525 ataagctgccaccaccac 542 | | | ||||||||||| Sbjct: 88842 ctcatcggccaccaccac 88825 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 tcctccacgtgaacaacgagggcgtgct 358 |||| ||||| ||||||||||||||||| Sbjct: 89024 tcctgcacgtcaacaacgagggcgtgct 88997
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgt--acgccgt-gccgcacccgctc 146 |||||||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||| Sbjct: 24645912 atggagatcacgagcagcgcgatgctgaagccggcgccgacgccgacgccgcacccgctc 24645971 Query: 147 gtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtcccc 206 | |||||||||||| || || |||| ||| |||||||| ||| | ||| ||||||||||| Sbjct: 24645972 gccggcgagaaggttcccctcaccgcctttgaccgcgcggccttcgacgtcttcgtcccc 24646031 Query: 207 accgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaagggctcctc 266 | ||| ||||||||| ||||||||||||||||| |||||| ||| |||||| |||| Sbjct: 24646032 atggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtcaaggaaggcctccgg 24646091 Query: 267 aaggccgtcgcgccgtaccctc 288 | ||||||||| ||||||||| Sbjct: 24646092 atggccgtcgccgcgtaccctc 24646113 Score = 117 bits (59), Expect = 4e-23 Identities = 146/175 (83%) Strand = Plus / Minus Query: 138 cacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatc 197 |||||||||| ||||||||||||||| || || | |||| ||||||| ||| | |||||| Sbjct: 24648273 cacccgctcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatc 24648214 Query: 198 ttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaa 257 |||||||||| ||| || |||||| ||||||| || |||||| ||||| ||| ||| Sbjct: 24648213 ttcgtccccatggtgttcccctaccgtgcgccggtgctgtccaatgaggcgatcatggag 24648154 Query: 258 gggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcg 312 || |||| | ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 24648153 ggcctccggatggccgtcgccgcgtaccctcacatggcgggtcgcctcgccctcg 24648099 Score = 101 bits (51), Expect = 2e-18 Identities = 134/159 (84%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgtacgccgt-gccgcacccgctcgt 148 |||||||||||||| ||| ||||| ||||| || || ||| || |||||||||||||| Sbjct: 24612375 atggagatcacgagcagcgcgatgctgaagacgacg-acgacgccgccgcacccgctcgc 24612317 Query: 149 cggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtccccac 208 |||||||||||| || || ||| |||||||||||| ||| | ||| ||||||||||| Sbjct: 24612316 cggcgagaaggttcccctctccgccttcgaccgcgcggccttcgacgtcttcgtcccctt 24612257 Query: 209 cgtgctcgcctaccccgcgccggcgccgtccaacgaggc 247 ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 24612256 ggtgttcgcctaccgcgcgccggcgccgtccagcgaggc 24612218 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Minus Query: 465 ggggcggcgctgctgcagatccagctcaacaggtacaagtgcggcggcctcgtggtcggc 524 ||||||||||| |||||| | ||||||| | | | | ||||||||||||||| |||||| Sbjct: 24612000 ggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcggc 24611941 Query: 525 ataagctgccaccaccac 542 | | | ||||||||||| Sbjct: 24611940 ctcatcggccaccaccac 24611923 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 tcctccacgtgaacaacgagggcgtgct 358 |||| ||||| ||||||||||||||||| Sbjct: 24612122 tcctgcacgtcaacaacgagggcgtgct 24612095
>dbj|AK061327.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H12, full insert sequence Length = 1584 Score = 133 bits (67), Expect = 7e-28 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgt--acgccgt-gccgcacccgctc 146 |||||||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||| Sbjct: 40 atggagatcacgagcagcgcgatgctgaagccggcgccgacgccgacgccgcacccgctc 99 Query: 147 gtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtcccc 206 | |||||||||||| || || |||| ||| |||||||| ||| | ||| ||||||||||| Sbjct: 100 gccggcgagaaggttcccctcaccgcctttgaccgcgcggccttcgacgtcttcgtcccc 159 Query: 207 accgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaagggctcctc 266 | ||| ||||||||| ||||||||||||||||| |||||| ||| |||||| |||| Sbjct: 160 atggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtcaaggaaggcctccgg 219 Query: 267 aaggccgtcgcgccgtaccctc 288 | ||||||||| ||||||||| Sbjct: 220 atggccgtcgccgcgtaccctc 241
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 170/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgt--acgccgt-gccgcacccgctc 146 |||||||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||| Sbjct: 24957582 atggagatcacgagcagcgcgatgctgaagccggcgccgacgccgacgccgcacccgctc 24957641 Query: 147 gtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtcccc 206 | |||||||||||| || || |||| ||| |||||||| ||| | ||| ||||||||||| Sbjct: 24957642 gccggcgagaaggttcccctcaccgcctttgaccgcgcggccttcgacgtcttcgtcccc 24957701 Query: 207 accgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaagggctcctc 266 | ||| ||||||||| ||||||||||||||||| |||||| ||| |||||| |||| Sbjct: 24957702 atggtgttcgcctaccgcgcgccggcgccgtccagcgaggcggtcaaggaaggcctccgg 24957761 Query: 267 aaggccgtcgcgccgtaccctc 288 | ||||||||| ||||||||| Sbjct: 24957762 atggccgtcgccgcgtaccctc 24957783 Score = 117 bits (59), Expect = 4e-23 Identities = 146/175 (83%) Strand = Plus / Minus Query: 138 cacccgctcgtcggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatc 197 |||||||||| ||||||||||||||| || || | |||| ||||||| ||| | |||||| Sbjct: 24959943 cacccgctcgccggcgagaaggtccccctcactgccttcaaccgcgcggccttcgacatc 24959884 Query: 198 ttcgtccccaccgtgctcgcctaccccgcgccggcgccgtccaacgaggctctcagggaa 257 |||||||||| ||| || |||||| ||||||| || |||||| ||||| ||| ||| Sbjct: 24959883 ttcgtccccatggtgttcccctaccgtgcgccggtgctgtccaatgaggcgatcatggag 24959824 Query: 258 gggctcctcaaggccgtcgcgccgtaccctcacctggcgggtcgcctcgccctcg 312 || |||| | ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 24959823 ggcctccggatggccgtcgccgcgtaccctcacatggcgggtcgcctcgccctcg 24959769 Score = 101 bits (51), Expect = 2e-18 Identities = 134/159 (84%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 90 atggagatcacgaggagcacgatggtgaagccggcgtacgccgt-gccgcacccgctcgt 148 |||||||||||||| ||| ||||| ||||| || || ||| || |||||||||||||| Sbjct: 24924045 atggagatcacgagcagcgcgatgctgaagacgacg-acgacgccgccgcacccgctcgc 24923987 Query: 149 cggcgagaaggtcccgctgaccgtcttcgaccgcgccgccctggacatcttcgtccccac 208 |||||||||||| || || ||| |||||||||||| ||| | ||| ||||||||||| Sbjct: 24923986 cggcgagaaggttcccctctccgccttcgaccgcgcggccttcgacgtcttcgtcccctt 24923927 Query: 209 cgtgctcgcctaccccgcgccggcgccgtccaacgaggc 247 ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 24923926 ggtgttcgcctaccgcgcgccggcgccgtccagcgaggc 24923888 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Minus Query: 465 ggggcggcgctgctgcagatccagctcaacaggtacaagtgcggcggcctcgtggtcggc 524 ||||||||||| |||||| | ||||||| | | | | ||||||||||||||| |||||| Sbjct: 24923670 ggggcggcgcttctgcaggtacagctcacccgcttcgggtgcggcggcctcgtcgtcggc 24923611 Query: 525 ataagctgccaccaccac 542 | | | ||||||||||| Sbjct: 24923610 ctcatcggccaccaccac 24923593 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 tcctccacgtgaacaacgagggcgtgct 358 |||| ||||| ||||||||||||||||| Sbjct: 24923792 tcctgcacgtcaacaacgagggcgtgct 24923765
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 149 cggcgagaaggtcccgctgaccgtcttcgaccgcgccgcc 188 |||||||| ||||||||| ||||||||||||||||||||| Sbjct: 121215 cggcgagatggtcccgctcaccgtcttcgaccgcgccgcc 121176
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 149 cggcgagaaggtcccgctgaccgtcttcgaccgcgccgcc 188 |||||||| ||||||||| ||||||||||||||||||||| Sbjct: 11667280 cggcgagatggtcccgctcaccgtcttcgaccgcgccgcc 11667241
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 149 cggcgagaaggtcccgctgaccgtcttcgaccgcgccgcc 188 |||||||| ||||||||| ||||||||||||||||||||| Sbjct: 11673720 cggcgagatggtcccgctcaccgtcttcgaccgcgccgcc 11673681
>emb|X64391.1|SFMICX Streptomyces fradiae micX gene and DNA encoding ORF1 and S-adenosyl-L-homocysteine hydrolase Length = 1039 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 302 cctcgccctcgacgacctcggccg 325 |||||||||||||||||||||||| Sbjct: 381 cctcgccctcgacgacctcggccg 358
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Plus Query: 302 cctcgccctcgacgacctcggccg 325 |||||||||||||||||||||||| Sbjct: 6121084 cctcgccctcgacgacctcggccg 6121107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ccctcgacgacctcggccggc 327 ||||||||||||||||||||| Sbjct: 1420879 ccctcgacgacctcggccggc 1420859
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 363 atcgaggccaccgtcccggccgacctagcgg 393 ||||||||||||||| |||||||||| |||| Sbjct: 3160953 atcgaggccaccgtctcggccgaccttgcgg 3160923
>gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polyether nigericin biosynthetic gene cluster, complete sequence Length = 95700 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 205 ccaccgtgctcgcctaccccgcgccgg 231 |||||||||||||| |||||||||||| Sbjct: 20815 ccaccgtgctcgcccaccccgcgccgg 20841
>gb|AC124379.3| Mus musculus BAC clone RP24-399H16 from chromosome 7, complete sequence Length = 182479 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 aggctctcagggaagggctcct 265 |||||||||||||||||||||| Sbjct: 124079 aggctctcagggaagggctcct 124058
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 gccctcgacgacctcggccggc 327 |||||||||||||||||||||| Sbjct: 35340 gccctcgacgacctcggccggc 35319
>ref|NM_119398.2| Arabidopsis thaliana unknown protein AT4G32460 transcript variant AT4G32460.1 mRNA, complete cds Length = 1453 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 859 tcctcaaggccgtcgcgccgt 879
>ref|NM_202932.1| Arabidopsis thaliana unknown protein AT4G32460 transcript variant AT4G32460.2 mRNA, complete cds Length = 1257 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 830 tcctcaaggccgtcgcgccgt 850
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ccgcacccgctcgtcggcgag 155 ||||||||||||||||||||| Sbjct: 2811067 ccgcacccgctcgtcggcgag 2811087 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 530824 cgcctcgccctcgacgtcctcggc 530801
>gb|BT025248.1| Arabidopsis thaliana At4g32460 mRNA, complete cds Length = 1098 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 741 tcctcaaggccgtcgcgccgt 761
>emb|Z19549.1|MTBCARBCP M.tuberculosis gene for biotin carboxyl carrier protein Length = 2340 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ccgcacccgctcgtcggcgag 155 ||||||||||||||||||||| Sbjct: 1528 ccgcacccgctcgtcggcgag 1508
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ccgcacccgctcgtcggcgag 155 ||||||||||||||||||||| Sbjct: 42543 ccgcacccgctcgtcggcgag 42563
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ccgcacccgctcgtcggcgag 155 ||||||||||||||||||||| Sbjct: 271376 ccgcacccgctcgtcggcgag 271396
>emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77 Length = 197252 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 77402 tcctcaaggccgtcgcgccgt 77382
>emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4, BAC clone F8B4 (ESSA project) Length = 93257 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 63685 tcctcaaggccgtcgcgccgt 63665
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ccctcgacgacctcggccggc 327 ||||||||||||||||||||| Sbjct: 1411067 ccctcgacgacctcggccggc 1411047
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 305 cgccctcgacgacctcggccggcgc 329 |||||||| |||||||||||||||| Sbjct: 1895758 cgccctcgccgacctcggccggcgc 1895734
>emb|BX828941.1|CNS0A4HT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZH02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 659 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 110 tcctcaaggccgtcgcgccgt 130
>emb|BX827303.1|CNS0A3Q4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZB09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1369 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 830 tcctcaaggccgtcgcgccgt 850
>gb|AY087668.1| Arabidopsis thaliana clone 37529 mRNA, complete sequence Length = 1419 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcctcaaggccgtcgcgccgt 282 ||||||||||||||||||||| Sbjct: 859 tcctcaaggccgtcgcgccgt 879
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 acgacctcggccggcgcttcc 333 ||||||||||||||||||||| Sbjct: 164607 acgacctcggccggcgcttcc 164627
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 gccgctggcgtcgacgacctc 437 ||||||||||||||||||||| Sbjct: 1547798 gccgctggcgtcgacgacctc 1547778 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 163 cgctgaccgtcttcgaccgcgccgccctggac 194 ||||||||||| |||||||||||| |||||| Sbjct: 2801166 cgctgaccgtcaccgaccgcgccgcgctggac 2801135
>dbj|AB015985.2| Paracoccus denitrificans genes for chaperonin 10 and chaperonin 60, complete cds Length = 2514 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggcc 324 |||||||||||||||| |||||||| Sbjct: 1185 cgcctcgccctcgacgtcctcggcc 1161
>ref|XM_550037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2376 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gtacgccgtgccgcacccgc 144 |||||||||||||||||||| Sbjct: 1467 gtacgccgtgccgcacccgc 1448
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gcctcgccctcgacgacctcggcc 324 ||||||||||||||| |||||||| Sbjct: 724800 gcctcgccctcgacgtcctcggcc 724823
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 169 ccgtcttcgaccgcgccgccctggacatcttcgtcc 204 ||||||||||||| | || |||||||| |||||||| Sbjct: 32730 ccgtcttcgaccgggacgacctggacaccttcgtcc 32765
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcacccgctcgtcggcgag 155 |||||||||||||||||||| Sbjct: 1703989 cgcacccgctcgtcggcgag 1703970
>gb|BC080667.1| Mus musculus ubiquilin 1, mRNA (cDNA clone MGC:90965 IMAGE:4935292), complete cds Length = 3663 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1543 ggcgctgctgcagatccagc 1562
>gb|BC028857.1| Mus musculus ubiquilin 1, transcript variant 2, mRNA (cDNA clone MGC:30288 IMAGE:4507759), complete cds Length = 2222 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1437 ggcgctgctgcagatccagc 1456
>ref|XM_882781.1| PREDICTED: Bos taurus similar to ataxin-1 ubiquitin-like interacting protein, transcript variant 6 (LOC533021), mRNA Length = 3406 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1151 ggcgctgctgcagatccagc 1170
>ref|XM_882776.1| PREDICTED: Bos taurus similar to ataxin-1 ubiquitin-like interacting protein, transcript variant 5 (LOC533021), mRNA Length = 3705 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1450 ggcgctgctgcagatccagc 1469
>ref|XM_612275.2| PREDICTED: Bos taurus similar to ataxin-1 ubiquitin-like interacting protein, transcript variant 1 (LOC533021), mRNA Length = 3717 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1462 ggcgctgctgcagatccagc 1481
>ref|XM_882759.1| PREDICTED: Bos taurus similar to ataxin-1 ubiquitin-like interacting protein, transcript variant 3 (LOC533021), mRNA Length = 1012 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 196 ggcgctgctgcagatccagc 215
>ref|XM_882756.1| PREDICTED: Bos taurus similar to ataxin-1 ubiquitin-like interacting protein, transcript variant 2 (LOC533021), mRNA Length = 2278 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1462 ggcgctgctgcagatccagc 1481
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 2467367 cgcctcgccctcgacgtcctcggc 2467344
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcacccgctcgtcggcgag 155 |||||||||||||||||||| Sbjct: 2949438 cgcacccgctcgtcggcgag 2949419
>gb|AE008968.1| Agrobacterium tumefaciens str. C58 AT plasmid section 43 of 49 of the complete sequence Length = 13576 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcacccgctcgtcggcgag 155 |||||||||||||||||||| Sbjct: 10427 cgcacccgctcgtcggcgag 10408
>ref|NM_026842.3| Mus musculus ubiquilin 1 (Ubqln1), transcript variant 1, mRNA Length = 2399 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 285 ggcgctgctgcagatccagc 304
>ref|NM_152234.1| Mus musculus ubiquilin 1 (Ubqln1), transcript variant 2, mRNA Length = 2222 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1437 ggcgctgctgcagatccagc 1456
>gb|AE007916.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 44 of 50 of the complete sequence Length = 13580 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcacccgctcgtcggcgag 155 |||||||||||||||||||| Sbjct: 10432 cgcacccgctcgtcggcgag 10413
>gb|AY523975.1|AY523972S4 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 6171 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 cgccgccctggacatcttcgtccccacc 209 |||||||||||||| ||||||| ||||| Sbjct: 2718 cgccgccctggacagcttcgtcgccacc 2745
>gb|AC163038.5| Mus musculus BAC clone RP23-180A14 from chromosome 13, complete sequence Length = 213865 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 98450 ggcgctgctgcagatccagc 98431
>gb|BC010213.1| Mus musculus ubiquilin 1, mRNA (cDNA clone IMAGE:3483472), partial cds Length = 1720 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 925 ggcgctgctgcagatccagc 944
>ref|XM_380350.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00174.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cgctcgtcggcgagaaggtc 161 |||||||||||||||||||| Sbjct: 131 cgctcgtcggcgagaaggtc 112
>gb|BC026847.1| Mus musculus ubiquilin 1, mRNA (cDNA clone MGC:18766 IMAGE:4015641), complete cds Length = 3687 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1565 ggcgctgctgcagatccagc 1584
>emb|AJ439995.1|BSP439995 Blattabacterium sp. (Blattella germanica) partial groEL gene Length = 972 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 gcctcgccctcgacgacctcggcc 324 ||||||||||||||| |||||||| Sbjct: 563 gcctcgccctcgacgtcctcggcc 540
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 187468 cgcctcgccctcgacgtcctcggc 187445
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 647344 cgcctcgccctcgacgtcctcggc 647321
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cgcacccgctcgtcggcgag 155 |||||||||||||||||||| Sbjct: 2679376 cgcacccgctcgtcggcgag 2679357
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 187394 cgcctcgccctcgacgtcctcggc 187371
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tcttcgaccgcgccgccctg 191 |||||||||||||||||||| Sbjct: 3026275 tcttcgaccgcgccgccctg 3026294
>ref|NM_168059.2| Drosophila melanogaster CG14995-RA, transcript variant A (CG14995), mRNA Length = 3176 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgggtcgcctcgccctcgac 314 |||||||||||||||||||| Sbjct: 2306 cgggtcgcctcgccctcgac 2287
>ref|NM_168058.2| Drosophila melanogaster CG14995-RC, transcript variant C (CG14995), mRNA Length = 3047 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgggtcgcctcgccctcgac 314 |||||||||||||||||||| Sbjct: 2177 cgggtcgcctcgccctcgac 2158
>ref|NM_168057.2| Drosophila melanogaster CG14995-RD, transcript variant D (CG14995), mRNA Length = 2876 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgggtcgcctcgccctcgac 314 |||||||||||||||||||| Sbjct: 2006 cgggtcgcctcgccctcgac 1987
>ref|NM_139600.3| Drosophila melanogaster CG14995-RB, transcript variant B (CG14995), mRNA Length = 1874 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgggtcgcctcgccctcgac 314 |||||||||||||||||||| Sbjct: 1004 cgggtcgcctcgccctcgac 985
>dbj|AK131766.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700100O15 product:ubiquilin 1, full insert sequence Length = 637 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 194 ggcgctgctgcagatccagc 213
>dbj|AK165456.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530007A07 product:DA41 homolog, full insert sequence Length = 3560 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1463 ggcgctgctgcagatccagc 1482
>gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold Length = 277620 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 acgaggctctcagggaaggg 260 |||||||||||||||||||| Sbjct: 154470 acgaggctctcagggaaggg 154489
>gb|AY058369.1| Drosophila melanogaster GH13848 full length cDNA Length = 1889 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgggtcgcctcgccctcgac 314 |||||||||||||||||||| Sbjct: 1004 cgggtcgcctcgccctcgac 985
>dbj|AK172695.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830230A01 product:DA41 homolog, full insert sequence Length = 3564 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1467 ggcgctgctgcagatccagc 1486
>gb|BC051098.1| Mus musculus mRNA similar to ubiquilin 1 (cDNA clone IMAGE:4458412) Length = 3332 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1210 ggcgctgctgcagatccagc 1229
>dbj|AK049298.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330020N12 product:DA41 homolog [Rattus norvegicus], full insert sequence Length = 2253 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1337 ggcgctgctgcagatccagc 1356
>dbj|AK048534.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130070F08 product:DA41 homolog [Rattus norvegicus], full insert sequence Length = 3516 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 1419 ggcgctgctgcagatccagc 1438
>dbj|AK004183.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110046H03 product:hypothetical Ubiquitin-associated domain containing protein, full insert sequence Length = 1607 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 866 ggcgctgctgcagatccagc 885
>gb|AC013602.4|AC013602 Homo sapiens, clone RP11-10C6, complete sequence Length = 152770 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 accccgcgccggcgccgtcc 239 |||||||||||||||||||| Sbjct: 147758 accccgcgccggcgccgtcc 147777
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gtgcggcggcctcgtggtcg 522 |||||||||||||||||||| Sbjct: 1713231 gtgcggcggcctcgtggtcg 1713212
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 accgtcttcgaccgcgccgccctg 191 |||| ||||||||||||||||||| Sbjct: 25162899 accgccttcgaccgcgccgccctg 25162876
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gtacgccgtgccgcacccgc 144 |||||||||||||||||||| Sbjct: 1868173 gtacgccgtgccgcacccgc 1868154
>gb|BC027375.1| Mus musculus ubiquilin 1, transcript variant 1, mRNA (cDNA clone IMAGE:4947289), complete cds Length = 2399 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 285 ggcgctgctgcagatccagc 304
>gb|U66831.1|RSU66831 Rhodobacter sphaeroides non-heat-induced groESL operon, chaperonin 10 (groES2) pseudogene, and chaperonin 60 (groEL2) gene, complete cds Length = 3139 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 gcctcgccctcgacgacctcggcc 324 ||||||||||||||| |||||||| Sbjct: 1646 gcctcgccctcgacgtcctcggcc 1623
>gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, complete sequence Length = 215485 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 accccgcgccggcgccgtcc 239 |||||||||||||||||||| Sbjct: 135221 accccgcgccggcgccgtcc 135240
>gb|AE004748.1| Pseudomonas aeruginosa PAO1, section 309 of 529 of the complete genome Length = 10883 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tcgccctcgacgacctcggc 323 |||||||||||||||||||| Sbjct: 4444 tcgccctcgacgacctcggc 4463
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gcacgatggtgaagccggcg 125 |||||||||||||||||||| Sbjct: 871524 gcacgatggtgaagccggcg 871543
>dbj|AK209853.1| Mus musculus cDNA, clone:Y2G0116I06, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000058735, based on BLAT search Length = 305 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 196 ggcgctgctgcagatccagc 215
>dbj|AK198908.1| Mus musculus cDNA, clone:Y1G0129I18, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000058735, based on BLAT search Length = 305 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 196 ggcgctgctgcagatccagc 215
>dbj|AK186933.1| Mus musculus cDNA, clone:Y0G0139E07, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000058735, based on BLAT search Length = 221 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 112 ggcgctgctgcagatccagc 131
>dbj|AK183890.1| Mus musculus cDNA, clone:Y0G0127L14, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000005444, based on BLAT search Length = 238 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 128 ggcgctgctgcagatccagc 147
>dbj|AK181884.1| Mus musculus cDNA, clone:Y0G0119O17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000058735, based on BLAT search Length = 221 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcgctgctgcagatccagc 489 |||||||||||||||||||| Sbjct: 112 ggcgctgctgcagatccagc 131
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gacgtgctcgtcgacggccg 412 |||||||||||||||||||| Sbjct: 8581965 gacgtgctcgtcgacggccg 8581946 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 8266612 cgcctcgccctcgacgtcctcggc 8266589
>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0083M16 Length = 179428 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gtacgccgtgccgcacccgc 144 |||||||||||||||||||| Sbjct: 109555 gtacgccgtgccgcacccgc 109536
>gb|AE005013.1| Halobacterium sp. NRC-1 section 44 of 170 of the complete genome Length = 13256 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcgcctcgccctcgacgacc 318 |||||||||||||||||||| Sbjct: 9467 tcgcctcgccctcgacgacc 9448
>emb|AL807381.6| Zebrafish DNA sequence from clone CH211-222N24, complete sequence Length = 230718 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gcgcgcgcacgcacgcacta 27 |||||||||||||||||||| Sbjct: 98696 gcgcgcgcacgcacgcacta 98715
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 accgtcttcgaccgcgccgccctg 191 |||| ||||||||||||||||||| Sbjct: 28022 accgccttcgaccgcgccgccctg 27999
>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0064I19 Length = 111644 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 accgtcttcgaccgcgccgccctg 191 |||| ||||||||||||||||||| Sbjct: 67074 accgccttcgaccgcgccgccctg 67051
>dbj|AK109609.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F12, full insert sequence Length = 1530 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gtgcggcggcctcgtggtcg 522 |||||||||||||||||||| Sbjct: 454 gtgcggcggcctcgtggtcg 473
>gb|AY110012.1| Zea mays CL907_1 mRNA sequence Length = 2928 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cctcgacgacctcggccggc 327 |||||||||||||||||||| Sbjct: 1077 cctcgacgacctcggccggc 1096
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 474 ctgctgcagatccagctcaacagg 497 |||||| ||||||||||||||||| Sbjct: 47988 ctgctggagatccagctcaacagg 47965
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 2361679 cgcctcgccctcgacgtcctcggc 2361702
>gb|BT001532.1| Drosophila melanogaster RE06837 full insert cDNA Length = 3058 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cgggtcgcctcgccctcgac 314 |||||||||||||||||||| Sbjct: 2177 cgggtcgcctcgccctcgac 2158
>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete sequence Length = 190917 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 474 ctgctgcagatccagctcaacagg 497 |||||| ||||||||||||||||| Sbjct: 76633 ctgctggagatccagctcaacagg 76610
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gtgcggcggcctcgtggtcg 522 |||||||||||||||||||| Sbjct: 1713207 gtgcggcggcctcgtggtcg 1713188
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gtgcggcggcctcgtggtcg 522 |||||||||||||||||||| Sbjct: 127253 gtgcggcggcctcgtggtcg 127272
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gtgcggcggcctcgtggtcg 522 |||||||||||||||||||| Sbjct: 53690 gtgcggcggcctcgtggtcg 53709
>dbj|AP001032.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874N19, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aagcgcgcgcacgcacgcac 25 |||||||||||||||||||| Sbjct: 157100 aagcgcgcgcacgcacgcac 157119
>gb|AD000014.1|MSGY423 Mycobacterium tuberculosis sequence from clone y423 Length = 42741 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 22359 cgcctcgccctcgacgtcctcggc 22382
>gb|M15467.1|MSGTCWPA M.tuberculosis 65 kDa antigen (cell wall protein a) gene Length = 4380 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 1019 cgcctcgccctcgacgtcctcggc 996
>emb|AL831753.5| Mouse DNA sequence from clone RP23-384M14 on chromosome 2, complete sequence Length = 180573 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 taagctgccaccaccacacc 545 |||||||||||||||||||| Sbjct: 89891 taagctgccaccaccacacc 89910
>gb|AF456475.1| Mycobacterium ulcerans heat shock protein 65 (hsp65) gene, partial cds Length = 1648 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 790 cgcctcgccctcgacgtcctcggc 767
>gb|AF456474.1| Mycobacterium marinum isolate S4 heat shock protein 65 (hsp65) gene, partial cds Length = 1648 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 790 cgcctcgccctcgacgtcctcggc 767
>gb|AF456471.1| Mycobacterium marinum strain hellenicum DL045 heat shock protein 65 (hsp65) gene, partial cds Length = 1648 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 790 cgcctcgccctcgacgtcctcggc 767
>gb|AF456470.1| Mycobacterium marinum strain ATCC 927 heat shock protein 65 (hsp65) gene, partial cds Length = 1648 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 790 cgcctcgccctcgacgtcctcggc 767
>gb|AF456468.1| Mycobacterium marinum strain eilaticum DL240490 heat shock protein 65 (hsp65) gene, partial cds Length = 1648 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 790 cgcctcgccctcgacgtcctcggc 767
>gb|M17705.1|MSGBCG M.bovis BCG gene encoding antigen A (MbaA), complete cds Length = 2431 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgcctcgccctcgacgacctcggc 323 |||||||||||||||| ||||||| Sbjct: 1343 cgcctcgccctcgacgtcctcggc 1320 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,180,384 Number of Sequences: 3902068 Number of extensions: 3180384 Number of successful extensions: 75855 Number of sequences better than 10.0: 114 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71519 Number of HSP's gapped (non-prelim): 4329 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
