ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart16b01 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 88.2 bits (217), Expect = 1e-17 Identities = 42/66 (63%), Positives = 54/66 (81%), Gaps = 1/66 (1%) Frame = +1 Query: 361 GQLITVLSIDGGGIRGLIPSTILACLESKLQELD-GPDARIADYFDVIAGTSTGALVASM 537 G+++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR+ADYFDVI GTSTG L+ +M Sbjct: 26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAM 85 Query: 538 LAAPGE 555 + P E Sbjct: 86 ITTPNE 91
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 87.4 bits (215), Expect = 2e-17 Identities = 45/78 (57%), Positives = 58/78 (74%), Gaps = 1/78 (1%) Frame = +1 Query: 325 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELD-GPDARIADYFDVI 501 A T TC + G+++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCA--TLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 502 AGTSTGALVASMLAAPGE 555 GTSTG L+ +M+ P E Sbjct: 74 GGTSTGGLLTAMITTPNE 91
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 84.0 bits (206), Expect = 3e-16 Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 1/78 (1%) Frame = +1 Query: 325 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELD-GPDARIADYFDVI 501 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 502 AGTSTGALVASMLAAPGE 555 GTSTG L+ +M+ P E Sbjct: 65 GGTSTGGLLTAMITTPNE 82
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 84.0 bits (206), Expect = 3e-16 Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 1/78 (1%) Frame = +1 Query: 325 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELD-GPDARIADYFDVI 501 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 502 AGTSTGALVASMLAAPGE 555 GTSTG L+ +M+ P E Sbjct: 74 GGTSTGGLLTAMITTPNE 91
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 84.0 bits (206), Expect = 3e-16 Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 1/78 (1%) Frame = +1 Query: 325 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELD-GPDARIADYFDVI 501 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 502 AGTSTGALVASMLAAPGE 555 GTSTG L+ +M+ P E Sbjct: 74 GGTSTGGLLTAMITTPNE 91
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 38.1 bits (87), Expect = 0.017 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +1 Query: 376 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 531 +L +DGGG++GLI +L +E D FD +AGTSTG ++A Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 525
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 37.7 bits (86), Expect = 0.022 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 376 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 531 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 471
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 37.7 bits (86), Expect = 0.022 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 376 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 531 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 470
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = +1 Query: 379 LSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAA 546 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA 52
>VG75_ICHV1 (Q00129) Hypothetical gene 75 protein| Length = 423 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 307 MCSHGHAPTCVTCPPPSQGQLITV 378 +CSHG +C+T PP QG T+ Sbjct: 139 LCSHGVTASCITMGPPVQGMPETI 162
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 350 GGQVTHVGAWPWLHMVSLAPSHCS 279 GGQ + GAWPW+ + + SH S Sbjct: 45 GGQTSSPGAWPWMVSLQIFTSHNS 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,736,232 Number of Sequences: 219361 Number of extensions: 953856 Number of successful extensions: 2989 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2885 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2980 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
