>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 194  PRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P  +   PV+ KP S+  RS + R+ +  P   +P A +   S  T +P+
Sbjct: 1129 PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVPTAPELQPSTSTDQPV 1178



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 212  PPIPTLPR----ATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P +PT P      +   PV+ KP S+  RS +  + +  P   +P A +   S  T +P+
Sbjct: 1283 PVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQISTSTDQPV 1342



 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -3

Query: 206  IPTLPRATLIS----PVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            +PT P   + +    PV+ KP S+  RS +  + +  P   +P A +   S  T +P+
Sbjct: 1326 VPTAPELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPV 1383

>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 212  PPIPT----LPRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P +PT     P      PV+ KP S+  R  + ++ +  P  A+P A +   S  T +PI
Sbjct: 1503 PHVPTDPEPQPSTPTDQPVTPKPTSRATRGRARKSSVKTPEPAVPTAAEPQPSASTDQPI 1562

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 194  PRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P  +   PV+ KP S+  RS + R+ +  P + +P A +      T +P+
Sbjct: 1129 PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEQGVPTAPELQPCTSTDQPV 1178



 Score = 29.6 bits (65), Expect = 2.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 212  PPIPTLPR----ATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P +PT P      +   PV+ KP S+  RS +  + +  P   +P A +   S  T +P+
Sbjct: 1283 PVVPTAPELQPSTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPV 1342

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 194  PRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P  +   PV+ KP S+  RS + R+ +  P   +P   +   S  T +P+
Sbjct: 1131 PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVPTVPELQPSTSTDQPV 1180



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 194  PRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P  +   PV+ KP S+  RS + R+ +  P   +P A +   S  T +P+
Sbjct: 1213 PSNSTDQPVTPKPTSEAIRSRTNRSSVKTPEAVVPTALELHPSNSTDQPV 1262



 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 194  PRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P  +   PV+ KP S+  RS + R+ +  P   +P   +   S  T +P+
Sbjct: 1254 PSNSTDQPVTPKPTSEAIRSRTNRSSVKTPEPVVPTVPELQPSTSTDQPV 1303



 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -3

Query: 212  PPIPTLPR----ATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P +PT P      +   PV+ KP S+  R  + R+ +  P    P A+       T +P+
Sbjct: 1695 PAVPTAPELHPTTSTDQPVTPKPTSRATRGRTNRSSVKTPEPVEPAASDLEPFTPTDQPV 1754



 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 194  PRATLISPVSEKPVSKPYRSNSGRAVLLLPREAMPWATKNSTSCRTIEPI 45
            P  +   PV+ KP S+  RS +  + +  P   +P A +   S  T +P+
Sbjct: 1377 PSNSTDQPVTPKPTSRTTRSRTNMSSVKTPESTVPIAPELPPSTSTEQPV 1426

>HXD3_HUMAN (P31249) Homeobox protein Hox-D3 (Hox-4A)|
          Length = 416

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
 Frame = -3

Query: 212 PPIPTLPRATLISPVSEKPVSKPYRS-NSGRAVLLLPREAMPWA------TKNSTSCRT 57
           PP PTLP ++  +P    P  KP    N+  +   + ++  PW       +K   SC T
Sbjct: 105 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCAT 163

>VTS1_EMENI (Q5BGC4) Protein vts1|
          Length = 611

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 215 RPPIPTLPRATLISPVSEKPVSKPYRSNSGRA 120
           R P+PT   AT+ +P  E P+  PY  N+  A
Sbjct: 309 RSPLPTSQTATIPAPEIEAPLLSPYNVNASWA 340

>SYC_PROMA (Q7VB63) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 499

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 113 LLPREAMPWATKNSTSCRTIEPIHRGMNRLGLL 15
           +L R +    T N  S R IE  HR M+ LG+L
Sbjct: 75  ILARASKENCTMNEVSERNIEEFHRDMDALGIL 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,084,724
Number of Sequences: 219361
Number of extensions: 531727
Number of successful extensions: 1568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)