ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart16a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196170.1| Oryza sativa (japonica cultivar-group) putative... 38 1.5
2ref|XM_366837.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 38 1.5
3gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 38 1.5
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.5
5gb|AY957390.1| Pseudomonas stutzeri NosL (nosL), NosY (nosY), an... 38 1.5
6ref|XM_223196.3| PREDICTED: Rattus norvegicus WD repeat and FYVE... 38 1.5
7dbj|AK066965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.5
8dbj|AK060656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.5
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 1.5
10gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 at... 36 5.7
11gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosyntheti... 36 5.7
12gb|AC164701.4| Mus musculus BAC clone RP24-108J12 from chromosom... 36 5.7
13gb|AC135671.3| Mus musculus BAC clone RP23-440D14 from chromosom... 36 5.7
14gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CI... 36 5.7
15emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 36 5.7
16gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, comp... 36 5.7
17gb|AC007570.23| Homo sapiens 12 BAC RP11-968O1 (Roswell Park Can... 36 5.7
18gb|AF363455.1| Porcine enterovirus 10 strain LP 54 polyprotein g... 36 5.7
19gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 dapto... 36 5.7
20gb|AC156459.2| Mus musculus BAC clone RP23-269A9 from chromosome... 36 5.7
21gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, comp... 36 5.7
22ref|XM_321156.2| Anopheles gambiae str. PEST ENSANGP00000007930 ... 36 5.7
23gb|DQ075325.1| Synechococcus sp. UW92 assimilatory nitrate reduc... 36 5.7

>ref|NM_196170.1| Oryza sativa (japonica cultivar-group) putative anthranilate
           N-benzoyltransferase (OSJNBa0032N04.2), mRNA
          Length = 1305

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 24  agtccatgggcaccgcccggctg 46
           ||||||||||||||||| |||||
Sbjct: 883 agtccatgggcaccgccgggctg 861



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>ref|XM_366837.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG02913.4) partial mRNA
          Length = 3765

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 5   aaaagcaccaacacggccg 23
           |||||||||||||||||||
Sbjct: 907 aaaagcaccaacacggccg 925



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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 24    agtccatgggcaccgcccggctg 46
             ||||||||||||||||| |||||
Sbjct: 17448 agtccatgggcaccgccgggctg 17426



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 24       agtccatgggcaccgcccggctg 46
                ||||||||||||||||| |||||
Sbjct: 11699387 agtccatgggcaccgccgggctg 11699365



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>gb|AY957390.1| Pseudomonas stutzeri NosL (nosL), NosY (nosY), and NosF (nosF) genes,
            complete cds; NosD-like (nosD) gene, complete sequence;
            and NosZ (nosZ) and NosR (nosR) genes, complete cds
          Length = 8000

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 14   aacacggccgagtccatgg 32
            |||||||||||||||||||
Sbjct: 3337 aacacggccgagtccatgg 3355



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>ref|XM_223196.3| PREDICTED: Rattus norvegicus WD repeat and FYVE domain containing 3
            (predicted) (Wdfy3_predicted), mRNA
          Length = 11516

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 23   gagtccatgggcaccgccc 41
            |||||||||||||||||||
Sbjct: 2488 gagtccatgggcaccgccc 2470



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>dbj|AK066965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092H19, full
           insert sequence
          Length = 996

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 24  agtccatgggcaccgcccggctg 46
           ||||||||||||||||| |||||
Sbjct: 486 agtccatgggcaccgccgggctg 464



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>dbj|AK060656.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A04, full
           insert sequence
          Length = 1482

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 24  agtccatgggcaccgcccggctg 46
           ||||||||||||||||| |||||
Sbjct: 972 agtccatgggcaccgccgggctg 950



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 24       agtccatgggcaccgcccggctg 46
                ||||||||||||||||| |||||
Sbjct: 11706727 agtccatgggcaccgccgggctg 11706705



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>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic region,
              partial sequence
          Length = 161264

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 18     cggccgagtccatgggcaccgcccgg 43
              ||||||||||||| ||||| ||||||
Sbjct: 126702 cggccgagtccatcggcacggcccgg 126727



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>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster,
             complete sequence
          Length = 135638

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 29    atgggcaccgcccggctg 46
             ||||||||||||||||||
Sbjct: 62483 atgggcaccgcccggctg 62500



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>gb|AC164701.4| Mus musculus BAC clone RP24-108J12 from chromosome 17, complete
             sequence
          Length = 184296

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     aaggaaaagcaccaacac 18
             ||||||||||||||||||
Sbjct: 24530 aaggaaaagcaccaacac 24547



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>gb|AC135671.3| Mus musculus BAC clone RP23-440D14 from chromosome 17, complete
             sequence
          Length = 188307

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     aaggaaaagcaccaacac 18
             ||||||||||||||||||
Sbjct: 37646 aaggaaaagcaccaacac 37629



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>gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-328A3, complete
             sequence
          Length = 105485

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     aaggaaaagcaccaacac 18
             ||||||||||||||||||
Sbjct: 62526 aaggaaaagcaccaacac 62543



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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 25     gtccatgggcaccgcccggctg 46
              |||||||| |||||||||||||
Sbjct: 264809 gtccatggacaccgcccggctg 264830



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>gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, complete sequence
          Length = 174007

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     aaggaaaagcaccaacac 18
             ||||||||||||||||||
Sbjct: 42237 aaggaaaagcaccaacac 42220



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>gb|AC007570.23| Homo sapiens 12 BAC RP11-968O1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167679

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     agtccatgggcaccgccc 41
              ||||||||||||||||||
Sbjct: 128933 agtccatgggcaccgccc 128916



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>gb|AF363455.1| Porcine enterovirus 10 strain LP 54 polyprotein gene, complete cds
          Length = 7401

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 19   ggccgagtccatgggcac 36
            ||||||||||||||||||
Sbjct: 1615 ggccgagtccatgggcac 1598



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>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene
              cluster, partial sequence
          Length = 127559

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     agtccatgggcaccgccc 41
              ||||||||||||||||||
Sbjct: 109620 agtccatgggcaccgccc 109603



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>gb|AC156459.2| Mus musculus BAC clone RP23-269A9 from chromosome 13, complete sequence
          Length = 188142

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     aaggaaaagcaccaacac 18
             ||||||||||||||||||
Sbjct: 86738 aaggaaaagcaccaacac 86721



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>gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, complete sequence
          Length = 174363

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      aaggaaaagcaccaacac 18
              ||||||||||||||||||
Sbjct: 101484 aaggaaaagcaccaacac 101467



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>ref|XM_321156.2| Anopheles gambiae str. PEST ENSANGP00000007930 (ENSANGG00000005985),
            partial mRNA
          Length = 2094

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 29   atgggcaccgcccggctg 46
            ||||||||||||||||||
Sbjct: 1761 atgggcaccgcccggctg 1744



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>gb|DQ075325.1| Synechococcus sp. UW92 assimilatory nitrate reductase (narB) gene,
           partial cds
          Length = 657

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 9   gcaccaacacggccgagt 26
           ||||||||||||||||||
Sbjct: 116 gcaccaacacggccgagt 133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 250,257
Number of Sequences: 3902068
Number of extensions: 250257
Number of successful extensions: 57999
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57916
Number of HSP's gapped (non-prelim): 83
length of query: 46
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 26
effective length of database: 17,155,003,908
effective search space: 446030101608
effective search space used: 446030101608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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