ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart16a04 |
|---|---|
| Clone Library Name | barley_pub |
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 35.8 bits (81), Expect = 0.096 Identities = 27/114 (23%), Positives = 39/114 (34%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 +SG ASSS P ASS+ SS + PSS + S+ Sbjct: 450 ASGSSAASSS---PSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSA 506 Query: 345 HPSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVSTARHASS 506 S+ S A S ++S+ AA T +TA A++ Sbjct: 507 PSSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATTTATTTATTATT 560 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/108 (18%), Positives = 36/108 (33%) Frame = +3 Query: 183 ASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAGHPSTCS 362 ++S A G SSA SS + PSS + S+ S S Sbjct: 425 STSDSSALGSTSESSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAAS 484 Query: 363 HHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVSTARHASS 506 P+S + ++S + P++ + S + ++S Sbjct: 485 SSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSAS 532
>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor| Length = 317 Score = 35.4 bits (80), Expect = 0.13 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 6/132 (4%) Frame = +3 Query: 144 PASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSS 323 P+S +SS +SSS + + +SS+ S ++ + SS Sbjct: 165 PSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSS 224 Query: 324 G------SHKSAGHPSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVS 485 S+ + S+ + + D++SA +A +A S Sbjct: 225 SFITSTTPASSSSSGAIVSNAKTASTDDSSSASSATSSVSSVVSSASSALSASASSASAS 284 Query: 486 TARHASSDGDPA 521 + ASSD PA Sbjct: 285 VSSSASSDASPA 296
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 33.1 bits (74), Expect = 0.62 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 2/117 (1%) Frame = +3 Query: 168 SGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSA-- 341 SG+ S H + +S Q SG++ RH SS H S+ Sbjct: 733 SGQSSRSEQHGSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSSSHG 792 Query: 342 GHPSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVSTARHASSDG 512 H S S + G ++ S + ++H +A S RH S+ G Sbjct: 793 QHGSGTSCSSSCGHYESGSGQASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSG 849
>SERA_ENTHI (P21138) Serine-rich 25 kDa antigen protein (SHEHP) (SREHP)| Length = 233 Score = 32.0 bits (71), Expect = 1.4 Identities = 23/132 (17%), Positives = 45/132 (34%) Frame = +3 Query: 141 QPASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPS 320 +P + P+ SS +P +SS P +P +S+ + + Sbjct: 86 KPDNKPEASSSDKPEASSSDKPDNKPEASSSDKPDNKPEASSSDKPDNKPEASSSDKPDN 145 Query: 321 SGSHKSAGHPSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVSTARHA 500 S+ P ++ P+A+S + A+ T++ + + Sbjct: 146 KPEASSSDKPDNKPEASSTNKPEASSTNKPEASSTNKPEASSTNKPEASSTSNSNDKSGS 205 Query: 501 SSDGDPAPVDGA 536 SSD D +D A Sbjct: 206 SSDNDNNNLDAA 217
>SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment)| Length = 115 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/79 (25%), Positives = 32/79 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 11 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 70 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++S+ Sbjct: 71 SSGSSGSSGSSGSSSSSSS 89 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/79 (25%), Positives = 32/79 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 8 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 67 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++S+ Sbjct: 68 SSGSSGSSGSSGSSGSSSS 86 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/78 (28%), Positives = 32/78 (41%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 23 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 82 Query: 345 HPSTCSHHPASGSPDAAS 398 S+ S + SGS +S Sbjct: 83 SSSSSSSN-GSGSSSGSS 99 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/79 (24%), Positives = 32/79 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 20 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 79 Query: 345 HPSTCSHHPASGSPDAASA 401 + S ++GS ++ + Sbjct: 80 SSGSSSSSSSNGSGSSSGS 98 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/79 (25%), Positives = 30/79 (37%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SS S S G Sbjct: 32 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSSSSSSNG 91 Query: 345 HPSTCSHHPASGSPDAASA 401 S+ +SGS +S+ Sbjct: 92 SGSSSGSSQSSGSQGGSSS 110 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/79 (24%), Positives = 31/79 (39%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 5 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 64 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++ + Sbjct: 65 SSGSSGSSGSSGSSGSSGS 83 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/79 (24%), Positives = 31/79 (39%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 2 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 61 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++ + Sbjct: 62 SSGSSGSSGSSGSSGSSGS 80
>HUNB_DROYA (O62541) Protein hunchback| Length = 759 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/83 (27%), Positives = 34/83 (40%) Frame = +3 Query: 153 CPQRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSH 332 C SS + ++H A ASS SSG + + +S S+ Sbjct: 637 CSGTSSADESMETAHVAQANTSASSTASSSGNSSNASS---------------NGNSSSN 681 Query: 333 KSAGHPSTCSHHPASGSPDAASA 401 S+ S+ + PASG+P AA A Sbjct: 682 SSSNGTSSAAAAPASGTPAAAGA 704
>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner| cell wall protein) Length = 238 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 2/124 (1%) Frame = +3 Query: 36 ENXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXCRQPASCPQRSSGRQPASSSHRAPGRQ 215 +N S + +S ASSS AP Sbjct: 86 QNASLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSSASSSTKASSSSAAPSSS 145 Query: 216 PASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGS--HKSAGHPSTCSHHPASGSPD 389 ASS + SS ++ + SS S H S+ ST S S + Sbjct: 146 KASSTESSSSSSSSTKAPSSEESSSTYVSSSKQASSTSEAHSSSAASSTVSQETVSSALP 205 Query: 390 AASA 401 ++A Sbjct: 206 TSTA 209
>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP40] Length = 1850 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Frame = +3 Query: 147 ASCPQRSSGRQPASSSH---RAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHP 317 +S RSS +SSS+ + + +SS+ RS ++ Sbjct: 1200 SSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRS 1259 Query: 318 SSGSHKSAGHPSTCSHHPA--SGSPDAASA 401 SS S KS+ H S SHH +GS ++S+ Sbjct: 1260 SSSSSKSSSHHSH-SHHSGHLNGSSSSSSS 1288 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/81 (23%), Positives = 31/81 (38%) Frame = +3 Query: 159 QRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKS 338 +RSS + SS + +SS+ RSS ++ S S KS Sbjct: 1180 KRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKS 1239 Query: 339 AGHPSTCSHHPASGSPDAASA 401 + S+ S +S S + S+ Sbjct: 1240 SSSSSSSSSSSSSKSSSSRSS 1260
>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)| Length = 220 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Frame = +3 Query: 183 ASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAGHPSTCS 362 +SS++ + G +SS SSG++ + +SGS ++ S+ S Sbjct: 1 SSSTNNSSG---SSSTNNSSGSSSTNNSSGSSSTNNASGSSSSNNTSGSSRNNSSGSSSS 57 Query: 363 HHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAIT----AHVSTARHASSDG 512 ++ +SGS S+ +R+ ++ + A S++R S+DG Sbjct: 58 NNSSSGSSAGNSSGSSSSNSSGSSGIGSLSRNSSSSSSSQAAGSSSSRRVSADG 111
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 30.0 bits (66), Expect = 5.3 Identities = 33/179 (18%), Positives = 49/179 (27%), Gaps = 6/179 (3%) Frame = +3 Query: 6 SRAPIKSHQTENXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXCRQPASCPQRSSGRQPA 185 S AP+ + + S P+S SS Sbjct: 352 SSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVT 411 Query: 186 SS---SHRAP---GRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAGH 347 SS S AP +SSA +S T + PSS + +S+ Sbjct: 412 SSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSA 471 Query: 348 PSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVSTARHASSDGDPAP 524 P T S +S +P + A + S+ +SS P P Sbjct: 472 PVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTP 530
>VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (Minor| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP42] Length = 1912 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/114 (20%), Positives = 41/114 (35%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SS +SSS + +SS+ RSS ++D SS S++S+ Sbjct: 1151 SSSGSSSSSSSSSSSSSDSSSSSRSSSSSDSSSSSSSSSSSSSSKSKSSSRSSKSNRSSS 1210 Query: 345 HPSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAITAHVSTARHASS 506 + S ++S++ TR A + ++ HAS+ Sbjct: 1211 SSN-------SKDSSSSSSKSNSKGSSSSSSKASGTRQKAKKQSKTTSFPHASA 1257
>METX_XANOR (Q5H124) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 399 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Frame = -3 Query: 517 GSPSEEAWRAVETWAVMAAGWRVLEXXXXXXXXXXXWERAEAASGE--PEAGWWEQVEG 347 G +A A ETW +AA + A AA+ + PE GWWE + G Sbjct: 23 GGVLHQAHVAYETWGALAA-----DRSNAVLIVTGLSPNAHAAANQANPEPGWWEAMVG 76
>METX_XANOM (Q2P3Z2) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 399 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Frame = -3 Query: 517 GSPSEEAWRAVETWAVMAAGWRVLEXXXXXXXXXXXWERAEAASGE--PEAGWWEQVEG 347 G +A A ETW +AA + A AA+ + PE GWWE + G Sbjct: 23 GGVLHQAHVAYETWGALAA-----DRSNAVLIVTGLSPNAHAAANQANPEPGWWEAMVG 76
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Frame = +3 Query: 147 ASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSG 326 +S P SS S S + +SS+ SS ++ SS Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 200 Query: 327 SHKSAGH----PSTCSHHPASGSPDAASA 401 S S+ ST S H +S S ++S+ Sbjct: 201 SSSSSSSVPITSSTSSSHSSSSSSSSSSS 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,209,987 Number of Sequences: 219361 Number of extensions: 398296 Number of successful extensions: 2411 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2368 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
