ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart16a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 906 bits (457), Expect = 0.0 Identities = 470/473 (99%), Gaps = 1/473 (0%) Strand = Plus / Plus Query: 11 ctgcagcagatctggagagattcttcatgtccacctcgagcaactttcgagacgcaattc 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423290 ctgcagcagatctggagagattcttcatgtccacctcgagcaactttcgagacgcaattc 2423349 Query: 71 gtgaggcccagactagcgcactcgtgggccccagtgacggttcgccgtgccctgcccttt 130 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2423350 gtgaggcccagactagcgcactcgtgggccccagtgt-ggttcgccgtgccctgcccttt 2423408 Query: 131 gtgggtggtggtcttgtgctcacctccgtcggtgtttacggcgggctcggtgtcctgggc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423409 gtgggtggtggtcttgtgctcacctccgtcggtgtttacggcgggctcggtgtcctgggc 2423468 Query: 191 agcaaccctagtctgttcatgcccctgtggatcggctcaatcgttctacagctagtgctg 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423469 agcaaccctagtctgttcatgcccctgtggatcggctcaatcgttctacagctagtgctg 2423528 Query: 251 ttctttgttgcccaaggcatcgcctcgcgcgggagcaatagcactgccctaccgctattg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423529 ttctttgttgcccaaggcatcgcctcgcgcgggagcaatagcactgccctaccgctattg 2423588 Query: 311 gccctgtatggtttgctcaccggcttttcgctgactgggcttattagtgttgccctcggc 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423589 gccctgtatggtttgctcaccggcttttcgctgactgggcttattagtgttgccctcggc 2423648 Query: 371 agtgtcggaattggcggtctaggagtcgcagccctcggctgtgggatcacctttatcttg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423649 agtgtcggaattggcggtctaggagtcgcagccctcggctgtgggatcacctttatcttg 2423708 Query: 431 gccagcatcttcgggcagaacatgtccgaatcgaccggtcaagccttgaccca 483 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2423709 gccagcatcttcgggcagaaaatgtccgaatcgaccggtcaagccttgaccca 2423761
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 906 bits (457), Expect = 0.0 Identities = 470/473 (99%), Gaps = 1/473 (0%) Strand = Plus / Minus Query: 11 ctgcagcagatctggagagattcttcatgtccacctcgagcaactttcgagacgcaattc 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893761 ctgcagcagatctggagagattcttcatgtccacctcgagcaactttcgagacgcaattc 1893702 Query: 71 gtgaggcccagactagcgcactcgtgggccccagtgacggttcgccgtgccctgcccttt 130 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1893701 gtgaggcccagactagcgcactcgtgggccccagtgt-ggttcgccgtgccctgcccttt 1893643 Query: 131 gtgggtggtggtcttgtgctcacctccgtcggtgtttacggcgggctcggtgtcctgggc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893642 gtgggtggtggtcttgtgctcacctccgtcggtgtttacggcgggctcggtgtcctgggc 1893583 Query: 191 agcaaccctagtctgttcatgcccctgtggatcggctcaatcgttctacagctagtgctg 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893582 agcaaccctagtctgttcatgcccctgtggatcggctcaatcgttctacagctagtgctg 1893523 Query: 251 ttctttgttgcccaaggcatcgcctcgcgcgggagcaatagcactgccctaccgctattg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893522 ttctttgttgcccaaggcatcgcctcgcgcgggagcaatagcactgccctaccgctattg 1893463 Query: 311 gccctgtatggtttgctcaccggcttttcgctgactgggcttattagtgttgccctcggc 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893462 gccctgtatggtttgctcaccggcttttcgctgactgggcttattagtgttgccctcggc 1893403 Query: 371 agtgtcggaattggcggtctaggagtcgcagccctcggctgtgggatcacctttatcttg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893402 agtgtcggaattggcggtctaggagtcgcagccctcggctgtgggatcacctttatcttg 1893343 Query: 431 gccagcatcttcgggcagaacatgtccgaatcgaccggtcaagccttgaccca 483 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1893342 gccagcatcttcgggcagaaaatgtccgaatcgaccggtcaagccttgaccca 1893290
>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence Length = 31404 Score = 833 bits (420), Expect = 0.0 Identities = 466/475 (98%), Gaps = 6/475 (1%) Strand = Plus / Plus Query: 11 ctgcagcagatctggagagattcttcatgtccacctcgagcaactttcgagacgcaattc 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18857 ctgcagcagatctggagagattcttcatgtccacctcgagcaactttcgagacgcaattc 18916 Query: 71 gtgaggcccagactagcgcactcgtgggccccagtgacggttcgccgtgccctgcccttt 130 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 18917 gtgaggcccagactagcgcactcgtgggccccagtgt-ggttcgccgtgccctgcccttt 18975 Query: 131 gtgggtggtggtcttgtgctcacctccgtcggtgtttacggcgggctcggtgtcctgggc 190 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 18976 gtgggtggtggtcttgtgctcacctccgtcggtgtttacg-cgggctcggtgtct--ggc 19032 Query: 191 agcaaccctagtctgttcatgcccctgtggatcggctcaatcgttctacagctagtgctg 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19033 agcaaccctagtctgttcatgcccctgtggatcggctcaatcgttctacagctagtgctg 19092 Query: 251 ttctttgttgcccaaggcatcgcctcgcgcgggagcaatagcact-gccc-taccgctat 308 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 19093 ttctttgttgcccaaggcatcgcctcgcgcgggagcaatagcacttgcccataccgctat 19152 Query: 309 tggccctgtatggtttgctcaccggcttttcgctgactgggcttattagtgttgccctcg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19153 tggccctgtatggtttgctcaccggcttttcgctgactgggcttattagtgttgccctcg 19212 Query: 369 gcagtgtcggaattggcggtctaggagtcgcagccctcggctgtgggatcacctttatct 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19213 gcagtgtcggaattggcggtctaggagtcgcagccctcggctgtgggatcacctttatct 19272 Query: 429 tggccagcatcttcgggcagaacatgtccgaatcgaccggtcaagccttgaccca 483 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 19273 tggccagcatcttcgggcagaaaatgtccgaatcgaccggtcaagccttgaccca 19327
>gb|AF064857.1| Homo sapiens BAC derived from chromosome 21q22.3, complete sequence, containing PEP19 (PCP4) gene Length = 199665 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agatctggagagattcttca 37 |||||||||||||||||||| Sbjct: 169938 agatctggagagattcttca 169957
>gb|AC124770.4| Mus musculus BAC clone RP23-8J2 from chromosome 18, complete sequence Length = 216754 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 gccctgccctttgtgggtggtggt 142 ||||||||| |||||||||||||| Sbjct: 101730 gccctgcccattgtgggtggtggt 101707
>ref|XM_746930.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g08030) partial mRNA Length = 1875 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gccagcatcttcgggcagaa 450 |||||||||||||||||||| Sbjct: 1596 gccagcatcttcgggcagaa 1577
>emb|CR689486.2|CNS0FUYI Tetraodon nigroviridis full-length cDNA Length = 1399 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gcagcagatctggagagatt 32 |||||||||||||||||||| Sbjct: 1184 gcagcagatctggagagatt 1203
>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 Length = 340000 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agatctggagagattcttca 37 |||||||||||||||||||| Sbjct: 117639 agatctggagagattcttca 117658
>emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome; segment 2/7 Length = 349323 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 119 gccctgccctttgtgggtggtggtcttgtgctcacc 154 |||||||||| |||||||||||| | ||||||||| Sbjct: 52081 gccctgccctatgtgggtggtggcatggtgctcacc 52116
>gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome 12, complete sequence Length = 194429 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gccctgccctttgtgggtgg 138 |||||||||||||||||||| Sbjct: 49726 gccctgccctttgtgggtgg 49707
>gb|AC022344.2|AC022344 Drosophila melanogaster, chromosome X, region 12F-13A, BAC clone BACR30H22, complete sequence Length = 157308 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gtgccctgccctttgtgggt 136 |||||||||||||||||||| Sbjct: 102976 gtgccctgccctttgtgggt 102995
>gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, complete sequence Length = 203534 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gccctgccctttgtgggtgg 138 |||||||||||||||||||| Sbjct: 117272 gccctgccctttgtgggtgg 117253
>gb|AE003497.3| Drosophila melanogaster chromosome X, section 49 of 74 of the complete sequence Length = 275651 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gtgccctgccctttgtgggt 136 |||||||||||||||||||| Sbjct: 92645 gtgccctgccctttgtgggt 92664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,839,634 Number of Sequences: 3902068 Number of extensions: 2839634 Number of successful extensions: 50485 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50412 Number of HSP's gapped (non-prelim): 67 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
