ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart15h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K0329_HUMAN (O15040) Protein KIAA0329/KIAA0297 29 8.9
2TOLB_CHLMU (Q9PJE1) Protein tolB precursor 29 8.9

>K0329_HUMAN (O15040) Protein KIAA0329/KIAA0297|
          Length = 1411

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 494 HGASVLEGCKAQTRASDRSGSGSCACPCRSGP 399
           HG  +L G +     SD +G G   CP   GP
Sbjct: 577 HGRELLNGAREDVGGSDVTGLGDEPCPADDGP 608



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>TOLB_CHLMU (Q9PJE1) Protein tolB precursor|
          Length = 426

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +2

Query: 251 RDLHRGGIPVGYLLLPRREEPE----DNSAYVSVFIALASEGTDVRALFELTLQDQSGKG 418
           RDL    + +G LL P +E         ++Y  +  ++  +G   + +F L L     K 
Sbjct: 56  RDLFARDLALGDLLAPTKEIAPLTVFIEASYPELIFSIKKDGKGAQKIFSLELSGNPSKD 115

Query: 419 KHKIHSHFDR 448
              IH   DR
Sbjct: 116 HQSIHEAADR 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,469,324
Number of Sequences: 219361
Number of extensions: 1107189
Number of successful extensions: 3591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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