Clone Name | bart15h11 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_186474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1275 Score = 521 bits (263), Expect = e-145 Identities = 367/399 (91%), Gaps = 2/399 (0%) Strand = Plus / Plus Query: 122 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 181 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 69 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 128 Query: 182 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 129 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 188 Query: 242 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 301 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 189 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 248 Query: 302 cgggaagaa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 360 ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 249 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 308 Query: 361 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 420 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 309 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 368 Query: 421 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagt 480 ||||||| |||||||||||||||| ||||| |||||||| || || |||| ||||||||| Sbjct: 369 gcacaaggtccactcccacttcgaccgctccctcgagtccggcccataca-ccctcaagt 427 Query: 481 accgaggctccatgtggggttacaaacggttctttcggc 519 |||| ||||||||||||||||||||| |||||||||||| Sbjct: 428 accgcggctccatgtggggttacaaaaggttctttcggc 466 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 51 atggacgacgacgccggtgacgcctcgccgccgccgg 87 ||||||||||||||||| ||||||||||||||||||| Sbjct: 1 atggacgacgacgccggcgacgcctcgccgccgccgg 37
>dbj|AK120608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151F13, full insert sequence Length = 1663 Score = 513 bits (259), Expect = e-142 Identities = 366/399 (91%), Gaps = 2/399 (0%) Strand = Plus / Plus Query: 122 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 181 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 167 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 226 Query: 182 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 227 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 286 Query: 242 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 301 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 287 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 346 Query: 302 cgggaagaa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 360 ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 347 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 406 Query: 361 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 420 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 407 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 466 Query: 421 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagt 480 ||||||| |||||||||||||||| ||||| ||||||| || || |||| ||||||||| Sbjct: 467 gcacaaggtccactcccacttcgaccgctccatcgagtccggcccataca-ccctcaagt 525 Query: 481 accgaggctccatgtggggttacaaacggttctttcggc 519 |||| ||||||||||||||||||||| |||||||||||| Sbjct: 526 accgcggctccatgtggggttacaaaaggttctttcggc 564 Score = 73.8 bits (37), Expect = 5e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 47 tcccatggacgacgacgccggtgacgcctcgccgccgccgg 87 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 95 tcccatggacgacgacgccggcgacgcctcgccgccgccgg 135
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 486 bits (245), Expect = e-134 Identities = 346/377 (91%), Gaps = 2/377 (0%) Strand = Plus / Minus Query: 122 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 181 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 3646390 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 3646331 Query: 182 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 3646330 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 3646271 Query: 242 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 301 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 3646270 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 3646211 Query: 302 cgggaagaa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 360 ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 3646210 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 3646151 Query: 361 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 420 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 3646150 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 3646091 Query: 421 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagt 480 ||||||| |||||||||||||||| ||||| |||||||| || || |||| ||||||||| Sbjct: 3646090 gcacaaggtccactcccacttcgaccgctccctcgagtccggcccataca-ccctcaagt 3646032 Query: 481 accgaggctccatgtgg 497 |||| |||||||||||| Sbjct: 3646031 accgcggctccatgtgg 3646015 Score = 109 bits (55), Expect = 9e-21 Identities = 167/203 (82%), Gaps = 1/203 (0%) Strand = Plus / Plus Query: 216 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 275 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 27492185 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 27492244 Query: 276 cagtgggctatctacttctacccagacgggaagaaccc-gaggataactccgcctacgtt 334 | ||||| |||||||||||||| |||||||||| ||| |||||| | |||||||||| Sbjct: 27492245 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 27492304 Query: 335 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 394 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 27492305 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 27492364 Query: 395 ttgcaggaccagagcggcaaggg 417 | ||||||||||||||||| Sbjct: 27492365 ctcgtcgaccagagcggcaaggg 27492387 Score = 99.6 bits (50), Expect = 9e-18 Identities = 202/250 (80%), Gaps = 2/250 (0%) Strand = Plus / Minus Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 84527 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 84468 Query: 309 aaccc-gaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 ||||| ||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 84467 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 84408 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 84407 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 84348 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 |||||||||||||||| || || ||| || | || || |||| |||||||||||||||| Sbjct: 84347 gtccactcccacttcgaccgatccctccaggccggaccctaca-ccctcaagtaccgagg 84289 Query: 488 ctccatgtgg 497 |||||||||| Sbjct: 84288 ctccatgtgg 84279 Score = 73.8 bits (37), Expect = 5e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 47 tcccatggacgacgacgccggtgacgcctcgccgccgccgg 87 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3646462 tcccatggacgacgacgccggcgacgcctcgccgccgccgg 3646422 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 ggggttacaaacggttctttcggc 519 ||||||||||| |||||||||||| Sbjct: 3645019 ggggttacaaaaggttctttcggc 3644996
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 486 bits (245), Expect = e-134 Identities = 346/377 (91%), Gaps = 2/377 (0%) Strand = Plus / Minus Query: 122 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 181 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 115707 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 115648 Query: 182 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 115647 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 115588 Query: 242 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 301 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 115587 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 115528 Query: 302 cgggaagaa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 360 ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 115527 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 115468 Query: 361 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 420 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 115467 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 115408 Query: 421 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagt 480 ||||||| |||||||||||||||| ||||| |||||||| || || |||| ||||||||| Sbjct: 115407 gcacaaggtccactcccacttcgaccgctccctcgagtccggcccataca-ccctcaagt 115349 Query: 481 accgaggctccatgtgg 497 |||| |||||||||||| Sbjct: 115348 accgcggctccatgtgg 115332 Score = 73.8 bits (37), Expect = 5e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 47 tcccatggacgacgacgccggtgacgcctcgccgccgccgg 87 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 115779 tcccatggacgacgacgccggcgacgcctcgccgccgccgg 115739 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 ggggttacaaacggttctttcggc 519 ||||||||||| |||||||||||| Sbjct: 114336 ggggttacaaaaggttctttcggc 114313
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 394 bits (199), Expect = e-106 Identities = 333/375 (88%), Gaps = 2/375 (0%) Strand = Plus / Minus Query: 124 cgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggct 183 |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct: 45278 cgcgcgacatggtggcgtccccgaccagctcgcgctctgtgacgcagacggtgaacgggt 45219 Query: 184 cccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcaca 243 |||||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||||||| Sbjct: 45218 cccaccacttcgtgatccagggctactcgctcgctaagggcatgggcgtggggaagcaca 45159 Query: 244 tcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacg 303 |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||| |||| Sbjct: 45158 tcgccagcgagacattcaccgtgggcggttaccagtgggcgatctacttctaccccgacg 45099 Query: 304 ggaagaa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagg 362 ||||||| |||||||| |||||| ||||||| |||||||||||||||||||| ||||| | Sbjct: 45098 ggaagaaccccgaggacaactccacctacgtctccgtcttcatcgcgctcgcgtccgacg 45039 Query: 363 gcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagc 422 |||| ||||| ||||| ||||| ||||||||| | | ||||||||||| |||||||||| Sbjct: 45038 gcaccgacgtgcgcgcgctcttcgagctcacgctcctcgaccagagcggaaagggcaagc 44979 Query: 423 acaagatccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtac 482 | ||| | ||||| |||||||| ||||| || ||||| ||||| |||| ||||||||||| Sbjct: 44978 ataaggtgcactcgcacttcgaccgctccctagagtccgggccgtaca-ccctcaagtac 44920 Query: 483 cgaggctccatgtgg 497 || || ||||||||| Sbjct: 44919 cgcggatccatgtgg 44905
>dbj|AK068848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164G10, full insert sequence Length = 1650 Score = 389 bits (196), Expect = e-105 Identities = 345/392 (88%), Gaps = 2/392 (0%) Strand = Plus / Plus Query: 129 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 188 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 160 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 219 Query: 189 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 248 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 220 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 279 Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 280 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 339 Query: 309 aa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 340 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 399 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 400 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 459 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 | |||||||||||||| ||||| |||||||| || || |||| |||||||||| || || Sbjct: 460 gtgcactcccacttcgaccgctccctcgagtccggcccctaca-ccctcaagtatcgcgg 518 Query: 488 ctccatgtggggttacaaacggttctttcggc 519 ||||||||||||||| ||| |||||||||||| Sbjct: 519 ctccatgtggggttataaaaggttctttcggc 550
>dbj|AK100829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123B19, full insert sequence Length = 1545 Score = 381 bits (192), Expect = e-102 Identities = 345/392 (88%), Gaps = 3/392 (0%) Strand = Plus / Plus Query: 129 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 188 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 209 gacatcgcggcgtcgccgacgagctcgcg-tcggtgacgcagacggtgaacgggtcgcac 267 Query: 189 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 248 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 268 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 327 Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 328 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 387 Query: 309 aa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 388 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 447 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 448 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 507 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 | |||||||||||||| ||||| |||||||| || || |||| |||||||||| || || Sbjct: 508 gtgcactcccacttcgaccgctccctcgagtccggcccctaca-ccctcaagtatcgcgg 566 Query: 488 ctccatgtggggttacaaacggttctttcggc 519 ||||||||||||||| ||| |||||||||||| Sbjct: 567 ctccatgtggggttataaaaggttctttcggc 598
>ref|XM_469951.1| Oryza sativa (japonica cultivar-group), mRNA Length = 566 Score = 361 bits (182), Expect = 1e-96 Identities = 325/370 (87%), Gaps = 2/370 (0%) Strand = Plus / Plus Query: 129 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 188 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 195 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 254 Query: 189 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 248 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 255 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 314 Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 315 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 374 Query: 309 aa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 375 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 434 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 435 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 494 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 | |||||||||||||| ||||| |||||||| || || |||| |||||||||| || || Sbjct: 495 gtgcactcccacttcgaccgctccctcgagtccggcccctaca-ccctcaagtatcgcgg 553 Query: 488 ctccatgtgg 497 |||||||||| Sbjct: 554 ctccatgtgg 563
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 361 bits (182), Expect = 1e-96 Identities = 325/370 (87%), Gaps = 2/370 (0%) Strand = Plus / Minus Query: 129 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 188 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 89715 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 89656 Query: 189 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 248 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 89655 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 89596 Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 89595 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 89536 Query: 309 aa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 89535 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 89476 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 89475 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 89416 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 | |||||||||||||| ||||| |||||||| || || |||| |||||||||| || || Sbjct: 89415 gtgcactcccacttcgaccgctccctcgagtccggcccctaca-ccctcaagtatcgcgg 89357 Query: 488 ctccatgtgg 497 |||||||||| Sbjct: 89356 ctccatgtgg 89347 Score = 206 bits (104), Expect = 5e-50 Identities = 298/360 (82%), Gaps = 2/360 (0%) Strand = Plus / Minus Query: 139 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 198 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 87938 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 87879 Query: 199 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 258 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 87878 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 87819 Query: 259 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccc-gagg 317 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 87818 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 87759 Query: 318 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 377 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 87758 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 87699 Query: 378 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 437 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 87698 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 87639 Query: 438 acttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgaggctccatgtgg 497 | ||||| ||||| || |||||| | || |||| |||||||| | || |||||||||||| Sbjct: 87638 agttcgaccgctcccttgagtctagcccctaca-ccctcaagaatcgcggctccatgtgg 87580
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 361 bits (182), Expect = 1e-96 Identities = 325/370 (87%), Gaps = 2/370 (0%) Strand = Plus / Plus Query: 129 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 188 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 32654192 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 32654251 Query: 189 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 248 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 32654252 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 32654311 Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 32654312 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 32654371 Query: 309 aa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 32654372 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 32654431 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 32654432 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 32654491 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 | |||||||||||||| ||||| |||||||| || || |||| |||||||||| || || Sbjct: 32654492 gtgcactcccacttcgaccgctccctcgagtccggcccctaca-ccctcaagtatcgcgg 32654550 Query: 488 ctccatgtgg 497 |||||||||| Sbjct: 32654551 ctccatgtgg 32654560 Score = 206 bits (104), Expect = 5e-50 Identities = 298/360 (82%), Gaps = 2/360 (0%) Strand = Plus / Plus Query: 139 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 198 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 32655969 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 32656028 Query: 199 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 258 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 32656029 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 32656088 Query: 259 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccc-gagg 317 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 32656089 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 32656148 Query: 318 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 377 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 32656149 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 32656208 Query: 378 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 437 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 32656209 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 32656268 Query: 438 acttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgaggctccatgtgg 497 | ||||| ||||| || |||||| | || |||| |||||||| | || |||||||||||| Sbjct: 32656269 agttcgaccgctcccttgagtctagcccctaca-ccctcaagaatcgcggctccatgtgg 32656327
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 361 bits (182), Expect = 1e-96 Identities = 325/370 (87%), Gaps = 2/370 (0%) Strand = Plus / Plus Query: 129 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 188 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 32744702 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 32744761 Query: 189 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 248 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 32744762 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 32744821 Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 32744822 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 32744881 Query: 309 aa-cccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 32744882 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 32744941 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 32744942 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 32745001 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 | |||||||||||||| ||||| |||||||| || || |||| |||||||||| || || Sbjct: 32745002 gtgcactcccacttcgaccgctccctcgagtccggcccctaca-ccctcaagtatcgcgg 32745060 Query: 488 ctccatgtgg 497 |||||||||| Sbjct: 32745061 ctccatgtgg 32745070 Score = 206 bits (104), Expect = 5e-50 Identities = 298/360 (82%), Gaps = 2/360 (0%) Strand = Plus / Plus Query: 139 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 198 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 32746479 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 32746538 Query: 199 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 258 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 32746539 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 32746598 Query: 259 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccc-gagg 317 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 32746599 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 32746658 Query: 318 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 377 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 32746659 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 32746718 Query: 378 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 437 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 32746719 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 32746778 Query: 438 acttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgaggctccatgtgg 497 | ||||| ||||| || |||||| | || |||| |||||||| | || |||||||||||| Sbjct: 32746779 agttcgaccgctcccttgagtctagcccctaca-ccctcaagaatcgcggctccatgtgg 32746837
>ref|XM_469952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 234 bits (118), Expect = 2e-58 Identities = 318/382 (83%), Gaps = 2/382 (0%) Strand = Plus / Plus Query: 139 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 198 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 101 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 160 Query: 199 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 258 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 161 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 220 Query: 259 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccc-gagg 317 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 221 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 280 Query: 318 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 377 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 281 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 340 Query: 378 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 437 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 341 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 400 Query: 438 acttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgaggctccatgtgg 497 | ||||| ||||| || |||||| | || |||| |||||||| | || |||||||||||| Sbjct: 401 agttcgaccgctcccttgagtctagcccctaca-ccctcaagaatcgcggctccatgtgg 459 Query: 498 ggttacaaacggttctttcggc 519 ||||| ||| |||||||||||| Sbjct: 460 ggttataaaaggttctttcggc 481
>ref|XM_479385.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1768 Score = 111 bits (56), Expect = 2e-21 Identities = 241/300 (80%), Gaps = 2/300 (0%) Strand = Plus / Plus Query: 216 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 275 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 491 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 550 Query: 276 cagtgggctatctacttctacccagacgggaagaaccc-gaggataactccgcctacgtt 334 | ||||| |||||||||||||| |||||||||| ||| |||||| | |||||||||| Sbjct: 551 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 610 Query: 335 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 394 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 611 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 670 Query: 395 ttgcaggaccagagcggcaagggcaagcacaagatccactcccacttcgatcgctcgctc 454 | ||||||||||||||||| || ||||| | ||| ||||||| | | |||||| Sbjct: 671 ctcgtcgaccagagcggcaaggggcaggacaaggtgcacacccactttgggaggtcgctc 730 Query: 455 gagtctgggccttacacccctcaagtaccgaggctccatgtggggttacaaacggttctt 514 ||| ||||| || | ||||||||||||| || ||||||||||||||| || ||||| Sbjct: 731 gagggcgggccatata-ccctcaagtaccgggggagcatgtggggttacaagcgtttctt 789
>dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L05, full insert sequence Length = 1768 Score = 111 bits (56), Expect = 2e-21 Identities = 241/300 (80%), Gaps = 2/300 (0%) Strand = Plus / Plus Query: 216 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 275 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 491 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 550 Query: 276 cagtgggctatctacttctacccagacgggaagaaccc-gaggataactccgcctacgtt 334 | ||||| |||||||||||||| |||||||||| ||| |||||| | |||||||||| Sbjct: 551 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 610 Query: 335 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 394 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 611 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 670 Query: 395 ttgcaggaccagagcggcaagggcaagcacaagatccactcccacttcgatcgctcgctc 454 | ||||||||||||||||| || ||||| | ||| ||||||| | | |||||| Sbjct: 671 ctcgtcgaccagagcggcaaggggcaggacaaggtgcacacccactttgggaggtcgctc 730 Query: 455 gagtctgggccttacacccctcaagtaccgaggctccatgtggggttacaaacggttctt 514 ||| ||||| || | ||||||||||||| || ||||||||||||||| || ||||| Sbjct: 731 gagggcgggccatata-ccctcaagtaccgggggagcatgtggggttacaagcgtttctt 789
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 109 bits (55), Expect = 9e-21 Identities = 167/203 (82%), Gaps = 1/203 (0%) Strand = Plus / Plus Query: 216 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 275 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 56156 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 56215 Query: 276 cagtgggctatctacttctacccagacgggaagaaccc-gaggataactccgcctacgtt 334 | ||||| |||||||||||||| |||||||||| ||| |||||| | |||||||||| Sbjct: 56216 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 56275 Query: 335 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 394 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 56276 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 56335 Query: 395 ttgcaggaccagagcggcaaggg 417 | ||||||||||||||||| Sbjct: 56336 ctcgtcgaccagagcggcaaggg 56358
>ref|XM_476350.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1712 Score = 107 bits (54), Expect = 4e-20 Identities = 209/258 (81%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 359 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 418 Query: 309 aaccc-gaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 ||||| ||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 419 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 478 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 479 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 538 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 |||||||||||||||| || || ||| || | || || |||| |||||||||||||||| Sbjct: 539 gtccactcccacttcgaccgatccctccaggccggaccctaca-ccctcaagtaccgagg 597 Query: 488 ctccatgtggggttacaa 505 |||||||||||| ||||| Sbjct: 598 ctccatgtggggctacaa 615
>dbj|AK069837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031F07, full insert sequence Length = 1712 Score = 107 bits (54), Expect = 4e-20 Identities = 209/258 (81%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 358 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 417 Query: 309 aaccc-gaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 ||||| ||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 418 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 477 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 478 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 537 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 |||||||||||||||| || || ||| || | || || |||| |||||||||||||||| Sbjct: 538 gtccactcccacttcgaccgatccctccaggccggaccctaca-ccctcaagtaccgagg 596 Query: 488 ctccatgtggggttacaa 505 |||||||||||| ||||| Sbjct: 597 ctccatgtggggctacaa 614
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 99.6 bits (50), Expect = 9e-18 Identities = 202/250 (80%), Gaps = 2/250 (0%) Strand = Plus / Minus Query: 249 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 308 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 83826 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 83767 Query: 309 aaccc-gaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 367 ||||| ||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 83766 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 83707 Query: 368 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 427 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 83706 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 83647 Query: 428 atccactcccacttcgatcgctcgctcgagtctgggccttacacccctcaagtaccgagg 487 |||||||||||||||| || || ||| || | || || |||| |||||||||||||||| Sbjct: 83646 gtccactcccacttcgaccgatccctccaggccggaccctaca-ccctcaagtaccgagg 83588 Query: 488 ctccatgtgg 497 |||||||||| Sbjct: 83587 ctccatgtgg 83578
>gb|BT016718.1| Zea mays clone Contig551 mRNA sequence Length = 1470 Score = 79.8 bits (40), Expect = 8e-12 Identities = 240/304 (78%), Gaps = 2/304 (0%) Strand = Plus / Plus Query: 203 gggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcac 262 ||||||||||||||||||||| |||||| ||| || |||| ||||| |||| | Sbjct: 153 gggctactccctcgccaagggcatgggccccggccgctacctcgccagcgacgtcttcgc 212 Query: 263 cgtggggggataccagtgggctatctacttctacccagacgggaagaac-ccgaggataa 321 ||| || |||||||| ||||| ||||| ||||||| ||||| |||||| ||||||| || Sbjct: 213 cgtcggaggataccactgggccgtctacctctaccccgacggcaagaacgccgaggacaa 272 Query: 322 ctccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctct 381 |||| |||||| ||||| ||| | || ||||||||||| |||| |||||||| || || Sbjct: 273 ctccaactacgtctccgttttcgttgccctcgcttccgacggcatcgacgtccgagccct 332 Query: 382 ctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactcccactt 441 ||| |||||||| | | |||||| |||| ||| |||||| | ||||| ||||| Sbjct: 333 cttcgagctcaccctcctcgaccagtccggccgcggctgccacaaggttcactcgcactt 392 Query: 442 cgatcgctcgctcgagtctgggccttacacccctcaagtaccgaggctccatgtggggtt 501 || ||||||||| ||| || || ||||||| |||||||| | || ||||||||||||| Sbjct: 393 tgaccgctcgctcaagttcggcccatacaccc-tcaagtacaggggatccatgtggggtt 451 Query: 502 acaa 505 |||| Sbjct: 452 acaa 455
>gb|AC148965.3| Medicago truncatula chromosome 7 BAC clone mth2-10f21, complete sequence Length = 97477 Score = 54.0 bits (27), Expect = 5e-04 Identities = 97/119 (81%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 240 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 299 ||||| || |||||||| |||||||| || || ||||| ||||| || ||||||||||| Sbjct: 66993 cacatagccagcgagactttcaccgtcggcggttaccaatgggcaatttacttctacccc 67052 Query: 300 gacgggaagaaccc-gaggataactccgcctacgtttccgtcttcatcgcgctcgcttc 357 ||||| || ||||| || ||||| || || || ||||| || ||||| || |||||||| Sbjct: 67053 gacggtaaaaacccagaagataattctgcttatgtttctgttttcattgctctcgcttc 67111
>emb|CR954186.2| Medicago truncatula chromosome 5 clone mth2-117e18, COMPLETE SEQUENCE Length = 113233 Score = 50.1 bits (25), Expect = 0.007 Identities = 77/93 (82%), Gaps = 1/93 (1%) Strand = Plus / Minus Query: 258 ttcaccgtggggggataccagtgggctatctacttctacccagacgggaagaa-cccgag 316 |||||||| || || || |||||||| ||||||||||| || || |||||||| || ||| Sbjct: 40569 ttcaccgtcggagggtatcagtgggcgatctacttctatcccgatgggaagaatccggag 40510 Query: 317 gataactccgcctacgtttccgtcttcatcgcg 349 ||||| || || || ||||| || ||||||||| Sbjct: 40509 gataattctgcgtatgtttcggttttcatcgcg 40477
>ref|NM_111245.2| Arabidopsis thaliana ATBPM4; protein binding AT3G03740 (ATBPM4) mRNA, complete cds Length = 1627 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 240 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttcta 295 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| Sbjct: 200 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttcta 255
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence Length = 101410 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 240 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttcta 295 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| Sbjct: 77422 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttcta 77477
>gb|AF367309.1| Arabidopsis thaliana AT3g03740/F20H23_23 mRNA, complete cds Length = 1581 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 240 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttcta 295 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| Sbjct: 200 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttcta 255
>gb|AY059150.1| Arabidopsis thaliana AT3g03740/F20H23_23 mRNA, complete cds Length = 1398 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 240 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttcta 295 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| Sbjct: 199 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttcta 254
>gb|AY084246.1| Arabidopsis thaliana clone 101153 mRNA, complete sequence Length = 1509 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 240 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttcta 295 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| Sbjct: 123 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttcta 178
>ref|NM_120925.1| Arabidopsis thaliana ferredoxin reductase/ ferredoxin:thioredoxin reductase AT5G08410 mRNA, complete cds Length = 736 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 accgtaaccctaaccctagc 37 |||||||||||||||||||| Sbjct: 396 accgtaaccctaaccctagc 377
>gb|BT019314.1| Zea mays clone Contig987.F mRNA sequence Length = 786 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgaccagctcgcgctccgtg 164 |||||||||||||||||||| Sbjct: 384 cgaccagctcgcgctccgtg 365
>gb|AC168220.1| Mus musculus BAC clone RP23-77O10 from chromosome 16, complete sequence Length = 215265 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ctaccgtaaccctaacccta 35 |||||||||||||||||||| Sbjct: 208870 ctaccgtaaccctaacccta 208851 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ctaccgtaaccctaacccta 35 |||||||||||||||||||| Sbjct: 208817 ctaccgtaaccctaacccta 208798 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ctaccgtaaccctaacccta 35 |||||||||||||||||||| Sbjct: 208770 ctaccgtaaccctaacccta 208751
>gb|AC183614.3| Pan troglodytes BAC clone CH251-186N21 from chromosome 15, complete sequence Length = 136531 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 36295 gtgatccagggctactccct 36314
>gb|AC140658.2| Homo sapiens chromosome 16 clone RP11-812E19, complete sequence Length = 188406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 162277 gtgatccagggctactccct 162258
>gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, complete sequence Length = 217553 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 205719 gtgatccagggctactccct 205700
>gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, complete sequence Length = 241627 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 20098 gtgatccagggctactccct 20117
>gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, complete sequence Length = 155343 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 49059 gtgatccagggctactccct 49040
>gb|AC154449.2| Mus musculus BAC clone RP24-168F5 from chromosome 16, complete sequence Length = 137395 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ctaccgtaaccctaacccta 35 |||||||||||||||||||| Sbjct: 128952 ctaccgtaaccctaacccta 128971 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ctaccgtaaccctaacccta 35 |||||||||||||||||||| Sbjct: 128905 ctaccgtaaccctaacccta 128924 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ctaccgtaaccctaacccta 35 |||||||||||||||||||| Sbjct: 128852 ctaccgtaaccctaacccta 128871
>emb|AL133338.8| Human DNA sequence from clone RP3-467N11 on chromosome 6q16.1-16.3 Contains the 5' end of the RNAH gene for an RNA helicase and a CpG island, complete sequence Length = 120314 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cctcgccgccgccgggacct 92 |||||||||||||||||||| Sbjct: 69214 cctcgccgccgccgggacct 69195
>gb|AC141587.2| Homo sapiens chromosome 16 clone RP11-1046E19, complete sequence Length = 186890 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 148452 gtgatccagggctactccct 148471
>emb|AL392174.1|ATF8L15 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project) Length = 125411 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 accgtaaccctaaccctagc 37 |||||||||||||||||||| Sbjct: 74006 accgtaaccctaaccctagc 74025
>gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, complete sequence Length = 187670 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 16390 gtgatccagggctactccct 16409
>emb|CR596513.1| full-length cDNA clone CS0DN003YC08 of Adult brain of Homo sapiens (human) Length = 1501 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cctcgccgccgccgggacct 92 |||||||||||||||||||| Sbjct: 37 cctcgccgccgccgggacct 18
>gb|AC007028.3| Homo sapiens chromosome 16 clone RP5-835P2, complete sequence Length = 148807 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 60352 gtgatccagggctactccct 60333
>gb|AC126335.16| Homo sapiens chromosome 15, clone RP11-854K16, complete sequence Length = 178738 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 37600 gtgatccagggctactccct 37581
>emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor cluster Length = 210954 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 agggcaagcacaagatccac 433 |||||||||||||||||||| Sbjct: 52915 agggcaagcacaagatccac 52896
>gb|AC141272.3| Homo sapiens chromosome 16 clone RP11-1415K9, complete sequence Length = 185187 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 62847 gtgatccagggctactccct 62866
>gb|AC141248.2| Homo sapiens chromosome 16 clone RP11-1251B5, complete sequence Length = 173206 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 88163 gtgatccagggctactccct 88182
>gb|BT003708.1| Arabidopsis thaliana At5g08410 mRNA, complete cds Length = 555 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 accgtaaccctaaccctagc 37 |||||||||||||||||||| Sbjct: 341 accgtaaccctaaccctagc 322
>gb|AY087076.1| Arabidopsis thaliana clone 31366 mRNA, complete sequence Length = 736 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 accgtaaccctaaccctagc 37 |||||||||||||||||||| Sbjct: 396 accgtaaccctaaccctagc 377
>gb|AC127533.9| Homo sapiens chromosome 15, clone RP11-1363O20, complete sequence Length = 165791 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 30832 gtgatccagggctactccct 30851
>gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, complete sequence Length = 93881 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 84448 gtgatccagggctactccct 84467
>gb|AC136428.3| Homo sapiens chromosome 16 clone RP11-104C4, complete sequence Length = 193708 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 159160 gtgatccagggctactccct 159179
>dbj|AK117319.1| Arabidopsis thaliana At5g08410 mRNA for putative lipoic acid synthase, complete cds, clone: RAFL16-88-M05 Length = 729 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 accgtaaccctaaccctagc 37 |||||||||||||||||||| Sbjct: 389 accgtaaccctaaccctagc 370
>gb|AY106208.1| Zea mays PCO085865 mRNA sequence Length = 1008 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cgaccagctcgcgctccgtg 164 |||||||||||||||||||| Sbjct: 414 cgaccagctcgcgctccgtg 433
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 853972 gtgatccagggctactccct 853991
>dbj|AP005897.1| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-70K11, complete sequence Length = 10100 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 accgtaaccctaaccctagc 37 |||||||||||||||||||| Sbjct: 5585 accgtaaccctaaccctagc 5604
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 cgccggtgacgcctcgccgc 81 |||||||||||||||||||| Sbjct: 1270915 cgccggtgacgcctcgccgc 1270896
>dbj|AB019441.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 5 of 5 Length = 157090 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgatccagggctactccct 214 |||||||||||||||||||| Sbjct: 53972 gtgatccagggctactccct 53991 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,910,916 Number of Sequences: 3902068 Number of extensions: 2910916 Number of successful extensions: 74072 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73501 Number of HSP's gapped (non-prelim): 517 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)