>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 765

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 7   KLRPPNPQRKSSQAKPNTRRFSREEDMEERRNDSQRQE 120
           KLR PNP  KSS+    ++  S E+D EE  +D + +E
Sbjct: 658 KLRGPNP--KSSRTTLQSKSESEEDDDEEEEDDEEEEE 693

>CHLD_TOBAC (O24133) Magnesium-chelatase subunit chlD, chloroplast precursor|
           (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)
           (Mg-chelatase subunit D)
          Length = 758

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 16  PPNPQRKSSQAKPNTRRFSREEDME-ERRNDSQRQEPTV 129
           PP PQ + S  + N      EED E E+  ++++Q+P V
Sbjct: 413 PPPPQNQDSSEEQNEEEEKEEEDQEDEKDRENEQQQPQV 451

>DNMT1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)|
           (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT)
           (M.HsaI)
          Length = 1616

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 1   RAKLRPPNPQRKSSQAKPNTRRFSREE--DMEERRNDSQRQEPT 126
           R ++  P P  +  +AK  TR    EE  + EE+R  SQ +EPT
Sbjct: 210 RERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPT 253

>YIQ1_YEAST (P40449) Hypothetical 27.1 kDa protein in SUC2-FOX3 intergenic|
           region
          Length = 235

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 7   KLRPPNPQRKSSQA--KPNTRRFSREEDMEERRNDSQRQE 120
           K +  N +RK++    K NT  +S+E ++EER+  ++RQE
Sbjct: 74  KSQAKNRRRKNNNGANKKNTLHYSKEINVEERKQIAKRQE 113

>BEGIN_HUMAN (Q9BUH8) Brain-enriched guanylate kinase-associated protein|
          Length = 593

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
 Frame = -3

Query: 500 EPLFRGDRAGEDAAEAPGVQRQ*LSGEAPSRXXXXXXXXXXXXXXDPTEEFRASSRNSL- 324
           EP F   RAG D + +PG     L G APS                 + E    SR+SL 
Sbjct: 489 EPCFL--RAGGDLSLSPGRSADPLPGYAPSEGGDGDRLGVQLCGTASSPEPEQGSRDSLE 546

Query: 323 PSG------LRPGACAS-SKARPNTG*NGLMR 249
           PS       + P A  S  +A P TG +GL R
Sbjct: 547 PSSMEASPEMHPAARLSPQQAFPRTGGSGLSR 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,670,207
Number of Sequences: 219361
Number of extensions: 758715
Number of successful extensions: 2869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2862
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)