ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart15h01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X69327.1|TAU2B T.aestivum (clone pTAU2.3) U2 snRNA Length = 196 Score = 270 bits (136), Expect = 4e-69 Identities = 182/196 (92%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||||||||||||||||||||||||| |||||||| ||| Sbjct: 61 tctgatatgtgggccatgtgcccacaacgatattaaatttattttttatgggggagggcc 120 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| |||||||||||| ||||| || |||||||||||||||||||||||| |||||| Sbjct: 121 caccacagtagcttgctgctggggcccttgcgtgtcgcccaggcgttgcactgctgcctg 180 Query: 181 ggcctggcgcacccca 196 |||| ||||||||||| Sbjct: 181 ggcc-ggcgcacccca 195
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 258 bits (130), Expect = 2e-65 Identities = 181/198 (91%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277259 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 277318 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 277319 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 277378 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| | Sbjct: 277379 caccacagtagcttgctgctggggctctcgcgtgtcgccctagcgttgcactgctgctta 277438 Query: 181 ggcctggcgcaccccaac 198 ||| |||||||||||||| Sbjct: 277439 ggcatggcgcaccccaac 277456 Score = 242 bits (122), Expect = 1e-60 Identities = 179/198 (90%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 274521 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtataata 274580 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| ||| Sbjct: 274581 tctgatatgtgggctatgtgttcactttgatattaaatttattttttgtgggggaaggcc 274640 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || |||||||||||||| ||||||||||||||||||||| |||||||||| ||| || Sbjct: 274641 caccacggtagcttgctatcggggctctcgcgtgtcgccctagcgttgcactactgcttg 274700 Query: 181 ggcctggcgcaccccaac 198 |||| ||||||||||||| Sbjct: 274701 ggcccggcgcaccccaac 274718
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26601026 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 26600967 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| ||| Sbjct: 26600966 tctgatatgtgggctatgtgttcactttgatattaaatttattttttgtgggggaaggcc 26600907 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || |||||||||||||| ||||||||||||||||||||| |||||||||| ||| || Sbjct: 26600906 caccacggtagcttgctatcggggctctcgcgtgtcgccctagcgttgcactactgcttg 26600847 Query: 181 ggcctggcgcaccccaac 198 |||| ||||||||||||| Sbjct: 26600846 ggcccggcgcaccccaac 26600829 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 26598314 atacctttctcggcctttttgctaagatcaagtgtagtatctgttcttatcagtttaata 26598255 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 26598254 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 26598195 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| | Sbjct: 26598194 caccacagtagcttgctgctggggctctcgcgtgtcgccctagcgttgcactgctgctta 26598135 Query: 181 ggcctggcgcaccccaac 198 ||| |||||||||||||| Sbjct: 26598134 ggcatggcgcaccccaac 26598117 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5232365 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 5232306 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| ||| Sbjct: 5232305 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggcc 5232246 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||||| || |||||| | ||||| |||||| |||||||||||||||||||| |||| | Sbjct: 5232245 tatcacagtggcttgccactggggccctcgcgcgtcgcccaggcgttgcactgctgcccg 5232186 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 5232185 ggcctggcgcaccccaac 5232168 Score = 242 bits (122), Expect = 1e-60 Identities = 179/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3233932 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 3233873 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| ||||||||||||||||||||||||||||| | | Sbjct: 3233872 tctgatatgtgggccatgtgtccacttcgatattaaatttattttttgtgggggagggtc 3233813 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | |||| |||||||||||||||||||||||||| ||||| Sbjct: 3233812 caccacagtggcttgccacttgggccctcgcgtgtcgcccaggcgttgcactacagcctg 3233753 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 3233752 ggcctggcgcaccccaac 3233735 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34580218 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 34580277 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 ||||||| |||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 34580278 tctgatacgtgggccatgtgtccactttgatattaaatttattttttgtgggggagagcc 34580337 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||| || |||||||||||||||||||| |||| | Sbjct: 34580338 caccacagtggcttgccactggggccctcacgcgtcgcccaggcgttgcactgctgcccg 34580397 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 34580398 ggcctggcgcaccccaac 34580415 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3196190 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 3196249 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| ||| Sbjct: 3196250 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggcc 3196309 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | |||| |||||||||||||||||||||||||| ||||| Sbjct: 3196310 cactacagtggcttgccactggggtcctcgcgtgtcgcccaggcgttgcactacagcctg 3196369 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 3196370 ggcctggcgcaccccaac 3196387 Score = 226 bits (114), Expect = 6e-56 Identities = 177/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34778691 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 34778632 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 34778631 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 34778572 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||| | |||||||||||||||||||| |||| | Sbjct: 34778571 cactacagtggcttgccactggggccctcatgcgtcgcccaggcgttgcactgctgcccg 34778512 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 34778511 ggcctggcgcaccccaac 34778494 Score = 226 bits (114), Expect = 6e-56 Identities = 177/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34764080 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 34764021 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||| ||| ||| || |||| ||||||||||||||||||||||||||||| | | Sbjct: 34764020 tctgatatatgggctatgtgcccacttcgatattaaatttattttttgtgggggagggtc 34763961 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| || ||||| ||| || |||||||||| ||||||||| |||| | Sbjct: 34763960 cactacagtggcttgccgctggggccctcacgcgtcgcccaggtgttgcactgctgcccg 34763901 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 34763900 ggcctggcgcaccccaac 34763883 Score = 210 bits (106), Expect = 4e-51 Identities = 175/198 (88%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5250028 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 5250087 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||| |||||||||||||||||| ||||| ||| Sbjct: 5250088 tctgatatgtgggccatgtgcccacttcgatgttaaatttattttttgtgagggagggcc 5250147 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || ||| || | ||||| |||||| ||||||||| |||||||||| |||| | Sbjct: 5250148 caccacagtggctagccactggggccctcgcgcgtcgcccagtcgttgcactgctgcccg 5250207 Query: 181 ggcctggcgcaccccaac 198 ||||||| |||||||||| Sbjct: 5250208 ggcctggtgcaccccaac 5250225 Score = 83.8 bits (42), Expect = 6e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 141 ggggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcaccccaac 198 ||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 20674985 ggggccctcgcgcgtcgcccaggcattgcactgctgcctgggcctggcgcaccccaac 20675042 Score = 63.9 bits (32), Expect = 5e-07 Identities = 90/108 (83%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 89 gatattaaatttattttttgtgggggagtgcccatcacggtagcttgctgc-cggggctc 147 |||||| |||||||||||| | |||||| | ||||||| || ||||| | ||||| | Sbjct: 34576351 gatattgaatttattttttataggggagggtccatcacagtgtattgctactgggggccc 34576410 Query: 148 tcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcacccc 195 || ||||||||| ||||||||||||| |||| ||||||||| |||||| Sbjct: 34576411 tcacgtgtcgcctaggcgttgcactgatgccagggcctggcacacccc 34576458 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 8 tctcggccttttggctaagatcaag 32 |||||||||||||||||| |||||| Sbjct: 34575951 tctcggccttttggctaaaatcaag 34575975 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cgatattaaatttatttttt 107 |||||||||||||||||||| Sbjct: 20674943 cgatattaaatttatttttt 20674962 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gatattaaatttattttttgtggg 112 ||||||||||||||||||| |||| Sbjct: 19740748 gatattaaatttattttttttggg 19740725
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143407 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 143348 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| ||| Sbjct: 143347 tctgatatgtgggctatgtgttcactttgatattaaatttattttttgtgggggaaggcc 143288 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || |||||||||||||| ||||||||||||||||||||| |||||||||| ||| || Sbjct: 143287 caccacggtagcttgctatcggggctctcgcgtgtcgccctagcgttgcactactgcttg 143228 Query: 181 ggcctggcgcaccccaac 198 |||| ||||||||||||| Sbjct: 143227 ggcccggcgcaccccaac 143210 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 140695 atacctttctcggcctttttgctaagatcaagtgtagtatctgttcttatcagtttaata 140636 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 140635 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 140576 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| | Sbjct: 140575 caccacagtagcttgctgctggggctctcgcgtgtcgccctagcgttgcactgctgctta 140516 Query: 181 ggcctggcgcaccccaac 198 ||| |||||||||||||| Sbjct: 140515 ggcatggcgcaccccaac 140498
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35187 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 35128 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| ||| Sbjct: 35127 tctgatatgtgggctatgtgttcactttgatattaaatttattttttgtgggggaaggcc 35068 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || |||||||||||||| ||||||||||||||||||||| |||||||||| ||| || Sbjct: 35067 caccacggtagcttgctatcggggctctcgcgtgtcgccctagcgttgcactactgcttg 35008 Query: 181 ggcctggcgcaccccaac 198 |||| ||||||||||||| Sbjct: 35007 ggcccggcgcaccccaac 34990 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 32475 atacctttctcggcctttttgctaagatcaagtgtagtatctgttcttatcagtttaata 32416 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 32415 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 32356 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| | Sbjct: 32355 caccacagtagcttgctgctggggctctcgcgtgtcgccctagcgttgcactgctgctta 32296 Query: 181 ggcctggcgcaccccaac 198 ||| |||||||||||||| Sbjct: 32295 ggcatggcgcaccccaac 32278
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125818 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 125759 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| ||| Sbjct: 125758 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggcc 125699 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||||| || |||||| | ||||| |||||| |||||||||||||||||||| |||| | Sbjct: 125698 tatcacagtggcttgccactggggccctcgcgcgtcgcccaggcgttgcactgctgcccg 125639 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 125638 ggcctggcgcaccccaac 125621 Score = 210 bits (106), Expect = 4e-51 Identities = 175/198 (88%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143481 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 143540 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||| |||||||||||||||||| ||||| ||| Sbjct: 143541 tctgatatgtgggccatgtgcccacttcgatgttaaatttattttttgtgagggagggcc 143600 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || ||| || | ||||| |||||| ||||||||| |||||||||| |||| | Sbjct: 143601 caccacagtggctagccactggggccctcgcgcgtcgcccagtcgttgcactgctgcccg 143660 Query: 181 ggcctggcgcaccccaac 198 ||||||| |||||||||| Sbjct: 143661 ggcctggtgcaccccaac 143678
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 242 bits (122), Expect = 1e-60 Identities = 179/198 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106119 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 106060 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| ||||||||||||||||||||||||||||| | | Sbjct: 106059 tctgatatgtgggccatgtgtccacttcgatattaaatttattttttgtgggggagggtc 106000 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | |||| |||||||||||||||||||||||||| ||||| Sbjct: 105999 caccacagtggcttgccacttgggccctcgcgtgtcgcccaggcgttgcactacagcctg 105940 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 105939 ggcctggcgcaccccaac 105922 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68377 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 68436 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| ||| Sbjct: 68437 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggcc 68496 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | |||| |||||||||||||||||||||||||| ||||| Sbjct: 68497 cactacagtggcttgccactggggtcctcgcgtgtcgcccaggcgttgcactacagcctg 68556 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 68557 ggcctggcgcaccccaac 68574
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 863792 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 863851 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| | | Sbjct: 863852 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggtc 863911 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 863912 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactacagcccg 863971 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 863972 ggcctggcgcaccccaac 863989
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29059254 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 29059313 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||||||||||||||||||| |||||||| | | Sbjct: 29059314 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttatgggggagggtc 29059373 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 29059374 caccatagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactgcagcctg 29059433 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 29059434 ggcctggcgcaccccaac 29059451 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27847638 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 27847697 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| | | Sbjct: 27847698 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggtc 27847757 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||||| |||||||||||||||||||| |||| | Sbjct: 27847758 caccacagtggcttgccactggggccctcgcacgtcgcccaggcgttgcactgctgcccg 27847817 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 27847818 ggcctggcgcaccccaac 27847835 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24190257 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 24190198 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||| ||| ||||||||||||||||||||||||||||| | | Sbjct: 24190197 tctgatatgtgggccatgtgttcacttcgatattaaatttattttttgtgggggagggtc 24190138 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 24190137 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactaccgcccg 24190078 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 24190077 ggcctggcgcaccccaac 24190060 Score = 167 bits (84), Expect = 5e-38 Identities = 108/116 (93%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25270685 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 25270626 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||||| | || |||| ||||||||||||||||||| |||||||| Sbjct: 25270625 tctgatatgtggaccatgtgcccactttgatattaaatttattttttatgggggag 25270570 Score = 145 bits (73), Expect = 2e-31 Identities = 97/105 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25221736 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 25221795 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttatttt 105 ||||||||||| || | ||| ||| ||||||||||||||||| Sbjct: 25221796 tctgatatgtgtaccatgtgttcactttgatattaaatttatttt 25221840 Score = 75.8 bits (38), Expect = 1e-10 Identities = 94/113 (83%), Gaps = 6/113 (5%) Strand = Plus / Minus Query: 88 cgatattaaatttattttttgtgggggagtgcccatcacggtagc------ttgctgccg 141 |||||||||||||||| |||||||||||| || |||||| || || |||| | | Sbjct: 24117898 cgatattaaatttattatttgtgggggagggctcatcacagtggcaagcccttgccactg 24117839 Query: 142 gggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcaccc 194 |||| |||||| ||||| |||||||||||||| |||| ||||||||||||||| Sbjct: 24117838 gggccctcgcgcgtcgctcaggcgttgcactgctgcccgggcctggcgcaccc 24117786 Score = 71.9 bits (36), Expect = 2e-09 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||| |||||||||||||| || |||| |||||||| | |||| || Sbjct: 18794596 atacctttctcggccttt-ggctaagatcaagtataatatcggttcttattattttatta 18794654 Query: 61 tctgatatgtgg 72 ||||||| |||| Sbjct: 18794655 tctgatacgtgg 18794666 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 88 cgatattaaatttattttttgtgggggag 116 |||||||||||||||| |||||||||||| Sbjct: 24117932 cgatattaaatttattatttgtgggggag 24117904
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10996 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 11055 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| | | Sbjct: 11056 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggtc 11115 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||||| |||||||||||||||||||| |||| | Sbjct: 11116 caccacagtggcttgccactggggccctcgcacgtcgcccaggcgttgcactgctgcccg 11175 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 11176 ggcctggcgcaccccaac 11193
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140017 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 140076 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| | | Sbjct: 140077 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggtc 140136 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||||| |||||||||||||||||||| |||| | Sbjct: 140137 caccacagtggcttgccactggggccctcgcacgtcgcccaggcgttgcactgctgcccg 140196 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 140197 ggcctggcgcaccccaac 140214
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176791 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 176850 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||||||||||||||||||| |||||||| | | Sbjct: 176851 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttatgggggagggtc 176910 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 176911 caccatagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactgcagcctg 176970 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 176971 ggcctggcgcaccccaac 176988
>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419H03 Length = 129020 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124344 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 124403 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| ||||||||||||||||||||||||||||| ||| Sbjct: 124404 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttgtgggggagggcc 124463 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | |||| |||||||||||||||||||||||||| ||||| Sbjct: 124464 cactacagtggcttgccactggggtcctcgcgtgtcgcccaggcgttgcactacagcctg 124523 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 124524 ggcctggcgcaccccaac 124541
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E05 Length = 137364 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 1749 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||| ||| ||||||||||||||||||||||||||||| | | Sbjct: 1748 tctgatatgtgggccatgtgttcacttcgatattaaatttattttttgtgggggagggtc 1689 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 1688 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactaccgcccg 1629 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 1628 ggcctggcgcaccccaac 1611
>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1710_H11 Length = 136107 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123672 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 123613 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||| ||| ||||||||||||||||||||||||||||| | | Sbjct: 123612 tctgatatgtgggccatgtgttcacttcgatattaaatttattttttgtgggggagggtc 123553 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 123552 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactaccgcccg 123493 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 123492 ggcctggcgcaccccaac 123475 Score = 75.8 bits (38), Expect = 1e-10 Identities = 94/113 (83%), Gaps = 6/113 (5%) Strand = Plus / Minus Query: 88 cgatattaaatttattttttgtgggggagtgcccatcacggtagc------ttgctgccg 141 |||||||||||||||| |||||||||||| || |||||| || || |||| | | Sbjct: 51313 cgatattaaatttattatttgtgggggagggctcatcacagtggcaagcccttgccactg 51254 Query: 142 gggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcaccc 194 |||| |||||| ||||| |||||||||||||| |||| ||||||||||||||| Sbjct: 51253 gggccctcgcgcgtcgctcaggcgttgcactgctgcccgggcctggcgcaccc 51201 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 88 cgatattaaatttattttttgtgggggag 116 |||||||||||||||| |||||||||||| Sbjct: 51347 cgatattaaatttattatttgtgggggag 51319
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7211 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 7270 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||||||||||||||||||| |||||||| | | Sbjct: 7271 tctgatatgtgggccatgtgcccacttcgatattaaatttattttttatgggggagggtc 7330 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 7331 caccatagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactgcagcctg 7390 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 7391 ggcctggcgcaccccaac 7408
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91158 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 91217 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 ||||||| |||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 91218 tctgatacgtgggccatgtgtccactttgatattaaatttattttttgtgggggagagcc 91277 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||| || |||||||||||||||||||| |||| | Sbjct: 91278 caccacagtggcttgccactggggccctcacgcgtcgcccaggcgttgcactgctgcccg 91337 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 91338 ggcctggcgcaccccaac 91355 Score = 63.9 bits (32), Expect = 5e-07 Identities = 90/108 (83%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 89 gatattaaatttattttttgtgggggagtgcccatcacggtagcttgctgc-cggggctc 147 |||||| |||||||||||| | |||||| | ||||||| || ||||| | ||||| | Sbjct: 87291 gatattgaatttattttttataggggagggtccatcacagtgtattgctactgggggccc 87350 Query: 148 tcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcacccc 195 || ||||||||| ||||||||||||| |||| ||||||||| |||||| Sbjct: 87351 tcacgtgtcgcctaggcgttgcactgatgccagggcctggcacacccc 87398 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 8 tctcggccttttggctaagatcaag 32 |||||||||||||||||| |||||| Sbjct: 86891 tctcggccttttggctaaaatcaag 86915
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46833 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 46892 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 ||||||| |||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 46893 tctgatacgtgggccatgtgtccactttgatattaaatttattttttgtgggggagagcc 46952 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||| || |||||||||||||||||||| |||| | Sbjct: 46953 caccacagtggcttgccactggggccctcacgcgtcgcccaggcgttgcactgctgcccg 47012 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 47013 ggcctggcgcaccccaac 47030 Score = 63.9 bits (32), Expect = 5e-07 Identities = 90/108 (83%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 89 gatattaaatttattttttgtgggggagtgcccatcacggtagcttgctgc-cggggctc 147 |||||| |||||||||||| | |||||| | ||||||| || ||||| | ||||| | Sbjct: 42966 gatattgaatttattttttataggggagggtccatcacagtgtattgctactgggggccc 43025 Query: 148 tcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcacccc 195 || ||||||||| ||||||||||||| |||| ||||||||| |||||| Sbjct: 43026 tcacgtgtcgcctaggcgttgcactgatgccagggcctggcacacccc 43073 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 8 tctcggccttttggctaagatcaag 32 |||||||||||||||||| |||||| Sbjct: 42566 tctcggccttttggctaaaatcaag 42590
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 863792 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 863851 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| | | Sbjct: 863852 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggtc 863911 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 863912 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactacagcccg 863971 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 863972 ggcctggcgcaccccaac 863989
>emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79383 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4132 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 4073 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| | | Sbjct: 4072 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggtc 4013 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 4012 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactacagcccg 3953 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 3952 ggcctggcgcaccccaac 3935
>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134217 Score = 234 bits (118), Expect = 2e-58 Identities = 178/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 1436 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| | | Sbjct: 1437 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggtc 1496 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 1497 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactacagcccg 1556 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 1557 ggcctggcgcaccccaac 1574
>dbj|AK107214.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C06, full insert sequence Length = 1411 Score = 232 bits (117), Expect = 1e-57 Identities = 177/197 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||| ||| ||||||||||||||||||||||||||||| | | Sbjct: 61 tctgatatgtgggccatgtgttcacttcgatattaaatttattttttgtgggggagggtc 120 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| |||||||||||||||||||||||||| ||| | Sbjct: 121 caccacagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactaccgcccg 180 Query: 181 ggcctggcgcaccccaa 197 ||||||||||||||||| Sbjct: 181 ggcctggcgcaccccaa 197
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0016F11 Length = 134907 Score = 226 bits (114), Expect = 6e-56 Identities = 177/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96539 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 96480 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 96479 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 96420 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||| | |||||||||||||||||||| |||| | Sbjct: 96419 cactacagtggcttgccactggggccctcatgcgtcgcccaggcgttgcactgctgcccg 96360 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 96359 ggcctggcgcaccccaac 96342 Score = 226 bits (114), Expect = 6e-56 Identities = 177/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81928 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 81869 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||| ||| ||| || |||| ||||||||||||||||||||||||||||| | | Sbjct: 81868 tctgatatatgggctatgtgcccacttcgatattaaatttattttttgtgggggagggtc 81809 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| || ||||| ||| || |||||||||| ||||||||| |||| | Sbjct: 81808 cactacagtggcttgccgctggggccctcacgcgtcgcccaggtgttgcactgctgcccg 81749 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 81748 ggcctggcgcaccccaac 81731
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 226 bits (114), Expect = 6e-56 Identities = 177/198 (89%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 227 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 226 tctgatatgtgggccatgtgtccactttgatattaaatttattttttgtgggggagggcc 167 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||| | |||||||||||||||||||| |||| | Sbjct: 166 cactacagtggcttgccactggggccctcatgcgtcgcccaggcgttgcactgctgcccg 107 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 106 ggcctggcgcaccccaac 89
>dbj|AK121312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112O04, full insert sequence Length = 3096 Score = 226 bits (114), Expect = 6e-56 Identities = 177/198 (89%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 596 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 || ||||||||| | | || |||| |||||||||||||||||||| |||||||| | | Sbjct: 597 tccgatatgtgggccatgtgcccacttcgatattaaatttattttttatgggggagggtc 656 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 657 caccatagtggcttgccactggggccctcgcgtgtcgcccaggcgttgcactgcagcctg 716 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 717 ggcctggcgcaccccaac 734
>gb|AF106847.1|AF106847 Oryza sativa U2 small nuclear RNA gene, complete sequence Length = 389 Score = 210 bits (106), Expect = 4e-51 Identities = 176/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 244 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || ||| ||||||||||||||||||||||| |||||| | | Sbjct: 245 tctgatatgtgggccatgtgctcactacgatattaaatttattttttgt-ggggagggtc 303 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || ||| || |||||| | ||||| ||| || || ||||||||||||||||| |||| | Sbjct: 304 caccacagtggcttgccactggggccctcacgcgttgcccaggcgttgcactgctgcccg 363 Query: 181 ggcctggcgcaccccaac 198 |||||||||||||||||| Sbjct: 364 ggcctggcgcaccccaac 381
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 204 bits (103), Expect = 2e-49 Identities = 133/143 (93%) Strand = Plus / Minus Query: 410 gcggcgcgcgcggagctggacccggtgtggacgctggcggcgccgtgggcgagccccgtg 469 |||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 28491 gcggcgcgggcggagatggacccggtgtggacgctgtcggcgccgtgggcgagccccgtg 28432 Query: 470 gagcgcggcgcggcccactggctggccggctggcggccgacgacgctggtccacctgctc 529 |||||||||||||| ||||||| ||||| ||||| || || |||||||||||||||||| Sbjct: 28431 gagcgcggcgcggcgtactggctcgccgggtggcgccccaccacgctggtccacctgctc 28372 Query: 530 tacaccgagtccggccgccgctt 552 ||||||||||||||||||||||| Sbjct: 28371 tacaccgagtccggccgccgctt 28349 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 254 gcgatggagctggaggcggcgaggcggcgcttccagctctggctccgcgggctgcggtcg 313 ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||| | Sbjct: 28647 gcgatggaggtggaggcggcgacgcggcggttccacctctggctccgcgggctgcggggg 28588 Query: 314 ctgcgccgcgacctccgcacggcgcgctgggccgacgacccggcgcagct 363 ||||| ||||| ||||| |||| || ||||| ||||||||||| ||||| Sbjct: 28587 ctgcggcgcgagctccgggcggcccggtgggcggacgacccggcccagct 28538
>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence Length = 121223 Score = 204 bits (103), Expect = 2e-49 Identities = 176/199 (88%), Gaps = 1/199 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104313 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 104372 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | || || |||| ||||||||||||||||||||||||||||| | | Sbjct: 104373 tctgatatgtgggccacgtgcccacttcgatattaaatttattttttgtgggggagggtc 104432 Query: 121 catcacggtagcttgctgccggg-gctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || || || |||||| | ||| | || ||||||||||||||||||||||| |||| Sbjct: 104433 cactacagtggcttgccactgggatcccttgcgtgtcgcccaggcgttgcactacagcct 104492 Query: 180 gggcctggcgcaccccaac 198 ||||| ||||||||||||| Sbjct: 104493 gggcccggcgcaccccaac 104511
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 204 bits (103), Expect = 2e-49 Identities = 176/199 (88%), Gaps = 1/199 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826020 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 826079 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | || || |||| ||||||||||||||||||||||||||||| | | Sbjct: 826080 tctgatatgtgggccacgtgcccacttcgatattaaatttattttttgtgggggagggtc 826139 Query: 121 catcacggtagcttgctgccggg-gctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || || || |||||| | ||| | || ||||||||||||||||||||||| |||| Sbjct: 826140 cactacagtggcttgccactgggatcccttgcgtgtcgcccaggcgttgcactacagcct 826199 Query: 180 gggcctggcgcaccccaac 198 ||||| ||||||||||||| Sbjct: 826200 gggcccggcgcaccccaac 826218
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 204 bits (103), Expect = 2e-49 Identities = 133/143 (93%) Strand = Plus / Minus Query: 410 gcggcgcgcgcggagctggacccggtgtggacgctggcggcgccgtgggcgagccccgtg 469 |||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 27663933 gcggcgcgggcggagatggacccggtgtggacgctgtcggcgccgtgggcgagccccgtg 27663874 Query: 470 gagcgcggcgcggcccactggctggccggctggcggccgacgacgctggtccacctgctc 529 |||||||||||||| ||||||| ||||| ||||| || || |||||||||||||||||| Sbjct: 27663873 gagcgcggcgcggcgtactggctcgccgggtggcgccccaccacgctggtccacctgctc 27663814 Query: 530 tacaccgagtccggccgccgctt 552 ||||||||||||||||||||||| Sbjct: 27663813 tacaccgagtccggccgccgctt 27663791 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 254 gcgatggagctggaggcggcgaggcggcgcttccagctctggctccgcgggctgcggtcg 313 ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||| | Sbjct: 27664089 gcgatggaggtggaggcggcgacgcggcggttccacctctggctccgcgggctgcggggg 27664030 Query: 314 ctgcgccgcgacctccgcacggcgcgctgggccgacgacccggcgcagct 363 ||||| ||||| ||||| |||| || ||||| ||||||||||| ||||| Sbjct: 27664029 ctgcggcgcgagctccgggcggcccggtgggcggacgacccggcccagct 27663980 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 253 ggcgatggagctggaggcggcg 274 |||||||||||||||||||||| Sbjct: 29239979 ggcgatggagctggaggcggcg 29240000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 agctcgccaagctggtggccg 380 ||||||||||||||||||||| Sbjct: 19955582 agctcgccaagctggtggccg 19955602
>dbj|AK067579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113F10, full insert sequence Length = 1405 Score = 204 bits (103), Expect = 2e-49 Identities = 176/199 (88%), Gaps = 1/199 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 64 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | || || |||| ||||||||||||||||||||||||||||| | | Sbjct: 65 tctgatatgtgggccacgtgcccacttcgatattaaatttattttttgtgggggagggtc 124 Query: 121 catcacggtagcttgctgccggg-gctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || || || |||||| | ||| | || ||||||||||||||||||||||| |||| Sbjct: 125 cactacagtggcttgccactgggatcccttgcgtgtcgcccaggcgttgcactacagcct 184 Query: 180 gggcctggcgcaccccaac 198 ||||| ||||||||||||| Sbjct: 185 gggcccggcgcaccccaac 203
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 204 bits (103), Expect = 2e-49 Identities = 176/199 (88%), Gaps = 1/199 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826022 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 826081 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | || || |||| ||||||||||||||||||||||||||||| | | Sbjct: 826082 tctgatatgtgggccacgtgcccacttcgatattaaatttattttttgtgggggagggtc 826141 Query: 121 catcacggtagcttgctgccggg-gctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || || || |||||| | ||| | || ||||||||||||||||||||||| |||| Sbjct: 826142 cactacagtggcttgccactgggatcccttgcgtgtcgcccaggcgttgcactacagcct 826201 Query: 180 gggcctggcgcaccccaac 198 ||||| ||||||||||||| Sbjct: 826202 gggcccggcgcaccccaac 826220
>gb|AC149482.1| Populus trichocarpa clone Pop1-69G3, complete sequence Length = 107795 Score = 198 bits (100), Expect = 1e-47 Identities = 173/196 (88%), Gaps = 1/196 (0%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90998 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 90939 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 ||||||| |||| | | | |||||| ||||||||||||| |||||||| ||||||| | | Sbjct: 90938 tctgatacgtgggccataggtccac-acgatattaaattaattttttgagggggagagtc 90880 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||| || |||||||||| | |||||||||| | ||||| || |||||||||| | || | Sbjct: 90879 cataacagtagcttgctactggggctctcgggcgtcgctcatgcgttgcactatagcaag 90820 Query: 181 ggcctggcgcacccca 196 ||||||||||||||| Sbjct: 90819 agcctggcgcacccca 90804
>gb|S72337.1| (wU2.1)=U2 snRNA [Triticum aestivum=wheat, snRNA, 194 nt] Length = 194 Score = 192 bits (97), Expect = 8e-46 Identities = 109/113 (96%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct: 61 tctgatatgtgggccatgtgtccacaacgatattaaatttattttttgtgggg 113
>emb|X69330.1|TAU2E T.aestivum (clone pTAU2.1) U2 snRNA Length = 194 Score = 192 bits (97), Expect = 8e-46 Identities = 109/113 (96%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct: 61 tctgatatgtgggccatgtgtccacaacgatattaaatttattttttgtgggg 113
>emb|X69326.1|TAU2A T.aestivum (clone pTAU2.2) U2 snRNA Length = 194 Score = 192 bits (97), Expect = 8e-46 Identities = 109/113 (96%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct: 61 tctgatatgtgggccatgtgtccacaacgatattaaatttattttttgtgggg 113
>emb|X56321.1|STU222G S. tuberosum U2-22 gene for U2 snRNA Length = 680 Score = 190 bits (96), Expect = 3e-45 Identities = 172/196 (87%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 284 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 343 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | |||||| |||||||||| | ||||||| |||| || | | Sbjct: 344 tctgatatgtgggccattggtccac-acgatattaactcaattttttaaggggaagagtc 402 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||| | |||||||||||||| ||||||| ||| |||||||| |||||||||| ||| | Sbjct: 403 cattaaggtagcttgctgcctgggctcttgcgcgtcgcccatgcgttgcactactgcacg 462 Query: 181 ggcctggcgcacccca 196 |||||||||||||||| Sbjct: 463 ggcctggcgcacccca 478
>gb|M72889.1|POTSNRNAC Solanum tuberosum U2 small nuclear RNA, complete CDS Length = 196 Score = 190 bits (96), Expect = 3e-45 Identities = 172/196 (87%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | |||||| |||||||||| | ||||||| |||| || | | Sbjct: 61 tctgatatgtgggccattggtccac-acgatattaactcaattttttaaggggaagagtc 119 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||| | ||||||||||| || ||||||| ||| |||||||| |||||||||| ||| || Sbjct: 120 cattaaggtagcttgctacctgggctcttgcgcgtcgcccatgcgttgcactactgcatg 179 Query: 181 ggcctggcgcacccca 196 |||||||||||||||| Sbjct: 180 ggcctggcgcacccca 195
>gb|AC157776.1| Zea mays chromosome 8 BAC clone ZMMBBb0483G05, complete sequence Length = 147470 Score = 186 bits (94), Expect = 5e-44 Identities = 172/198 (86%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115175 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 115116 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||||| | ||| ||| |||||||||||||||||||||||||||| || Sbjct: 115115 tctgatatgtggaccatgtgttcactttgatattaaatttattttttgtgggggagggct 115056 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || |||||||||| | |||| ||| |||||||| ||||||||||| | | | Sbjct: 115055 cactacagtagcttgctactggggtcctcacgtgtcgcttgggcgttgcactatagtcca 114996 Query: 181 ggcctggcgcaccccaac 198 ||||||||||||||||| Sbjct: 114995 agcctggcgcaccccaac 114978 Score = 182 bits (92), Expect = 8e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104852 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 104793 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||||| | ||| ||| |||||||||||||||||||||||||||| || Sbjct: 104792 tctgatatgtggaccatgtgttcactttgatattaaatttattttttgtgggggagggct 104733 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcact 172 || || |||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 104732 cactacagtagcttgctactggggtcctcacgtgtcgcttgggcgttgcact 104681 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 145421 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttgaata 145362 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||||| | ||| ||| ||||||||||||||||||||||||||||| Sbjct: 145361 tctgatatgtggaccatgtgttcacttcgatattaaatttattttttgtgggggag 145306 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc 51 |||||||||||||||||||| ||||||| ||||||| ||||| |||||||| Sbjct: 95380 atacctttctcggccttttgactaagattaagtgtattatctattcttatc 95330 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc 51 ||||||||||||||||||| ||||||| ||||||| ||||| |||||||| Sbjct: 143121 atacctttctcggccttttaactaagattaagtgtattatctattcttatc 143071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc 51 ||||||||||||||||||| ||||||| ||||||| ||||| |||||||| Sbjct: 112751 atacctttctcggccttttaactaagattaagtgtattatctattcttatc 112701
>gb|AC163004.1| Gap filling sequence from Zea mays clone ZMMBBb0382K21, from chromosome 8, complete sequence Length = 21864 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 7951 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttgaata 7892 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||||| | ||| ||| ||||||||||||||||||||||||||||| Sbjct: 7891 tctgatatgtggaccatgtgttcacttcgatattaaatttattttttgtgggggag 7836 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc 51 ||||||||||||||||||| ||||||| ||||||| ||||| |||||||| Sbjct: 5651 atacctttctcggccttttaactaagattaagtgtattatctattcttatc 5601
>emb|X16459.1|ZMU2SNRN Zea mays gene for U2 small nuclear RNA (U2snRNA) Length = 694 Score = 168 bits (85), Expect = 1e-38 Identities = 106/113 (93%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 339 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | ||||||| |||||||||||| ||||||||||||| Sbjct: 340 tctgatatgtgggccatgtgtccacttcgatattaaattaattttttgtgggg 392 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 163 gcgttgcactgttgcctgggcctggcgcaccccaac 198 |||||||||| |||| || ||||||||||||||||| Sbjct: 441 gcgttgcactattgcttgagcctggcgcaccccaac 476
>dbj|D25323.1|PNIAATB Panicum miliaceum gene for mitochondrial aspartate aminotransferase, complete cds Length = 9014 Score = 168 bits (85), Expect = 1e-38 Identities = 106/113 (93%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7242 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 7183 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| ||| || | || |||||||||||||||||||||||||| Sbjct: 7182 tctgatatgtgggctatgtgcctacttcgatattaaatttattttttgtgggg 7130
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 167 bits (84), Expect = 5e-38 Identities = 108/116 (93%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87356 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 87297 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||||| | || |||| ||||||||||||||||||| |||||||| Sbjct: 87296 tctgatatgtggaccatgtgcccactttgatattaaatttattttttatgggggag 87241 Score = 145 bits (73), Expect = 2e-31 Identities = 97/105 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38407 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 38466 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttatttt 105 ||||||||||| || | ||| ||| ||||||||||||||||| Sbjct: 38467 tctgatatgtgtaccatgtgttcactttgatattaaatttatttt 38511
>emb|X15929.1|PSSNU2A Pea U2 snRNA (clone pPSU2.1) Length = 194 Score = 167 bits (84), Expect = 5e-38 Identities = 152/172 (88%), Gaps = 2/172 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | |||||| |||||||||||||||||| ||| ||||||| | Sbjct: 61 tctgatatgtgggccaatggtccac-acgatattaaatttatttcttgagggggagag-t 118 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcact 172 || ||| |||||||||| ||| |||||||||||||| | |||||||||| Sbjct: 119 caccacagtagcttgctattgggtctctcgcgtgtcgctcttgcgttgcact 170
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 163 bits (82), Expect = 8e-37 Identities = 171/198 (86%), Gaps = 2/198 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750257 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 750316 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||||||||||||||||||||||||||| | | Sbjct: 750317 tctgatatgtgg-ccatgtgcccactttgatattaaatttattttttgtgggggagggtc 750375 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | |||| ||| |||||||| |||||||||||| |||| Sbjct: 750376 caccatagtggcttgccactagggccttcgtgtgtcgcctaggcgttgcactacagcctt 750435 Query: 181 ggcctggcgcaccccaac 198 || ||||||||||||||| Sbjct: 750436 gg-ctggcgcaccccaac 750452 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751871 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 751930 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||| | | |||| || |||||||||||||||||| ||||||||| Sbjct: 751931 tctgatatgtgggccatgtgtctactttgatattaaatttatttttcgtgggggag 751986 Score = 153 bits (77), Expect = 7e-34 Identities = 104/113 (92%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664989 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 664930 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | |||| || |||||||||||||||||| |||||| Sbjct: 664929 tctgatatgtgggccatgtgtctactttgatattaaatttatttttcgtgggg 664877 Score = 143 bits (72), Expect = 7e-31 Identities = 153/179 (85%), Gaps = 2/179 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 14419739 atacctttctcggccttttgactaagatcaagtgtagtatctgttcttattagtttaata 14419798 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 | ||||| |||| | | ||||||| ||||||||||| | ||||||| ||||| ||| Sbjct: 14419799 tatgatacgtgggccatgtgtccac--ggatattaaattagtattttgtgagggagggcc 14419856 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || |||||||||| ||| | ||||| ||| |||||||| |||| |||||||| ||||| Sbjct: 14419857 caccacggtagctcgctactggggccctcatgtgtcgcctaggctttgcactgctgcct 14419915 Score = 143 bits (72), Expect = 7e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747188 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 747247 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 ||||||| |||| || |||| |||||||||||||||||||||||||||| Sbjct: 747248 tctgatacgtgggtcttgtgcccactttgatattaaatttattttttgtgggggag 747303
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 163 bits (82), Expect = 8e-37 Identities = 171/198 (86%), Gaps = 2/198 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49477 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 49536 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||||||||||||||||||||||||||| | | Sbjct: 49537 tctgatatgtgg-ccatgtgcccactttgatattaaatttattttttgtgggggagggtc 49595 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | |||| ||| |||||||| |||||||||||| |||| Sbjct: 49596 caccatagtggcttgccactagggccttcgtgtgtcgcctaggcgttgcactacagcctt 49655 Query: 181 ggcctggcgcaccccaac 198 || ||||||||||||||| Sbjct: 49656 gg-ctggcgcaccccaac 49672 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51091 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 51150 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||| | | |||| || |||||||||||||||||| ||||||||| Sbjct: 51151 tctgatatgtgggccatgtgtctactttgatattaaatttatttttcgtgggggag 51206 Score = 143 bits (72), Expect = 7e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46408 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 46467 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 ||||||| |||| || |||| |||||||||||||||||||||||||||| Sbjct: 46468 tctgatacgtgggtcttgtgcccactttgatattaaatttattttttgtgggggag 46523
>gb|AF106845.1|AF106845 Oryza sativa U2 small nuclear RNA genes, complete sequence Length = 2387 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1870 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 1929 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||| | | |||| || |||||||||||||||||| ||||||||| Sbjct: 1930 tctgatatgtgggccatgtgtctactttgatattaaatttatttttcgtgggggag 1985 Score = 147 bits (74), Expect = 4e-32 Identities = 169/198 (85%), Gaps = 2/198 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 257 atacctttctcggccttttggctaagatcaagtgtgatatctgttcttatcagtttaata 316 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || |||| |||||||||||||||||||||||||||| | | Sbjct: 317 tctgatatgtgg-ccatgtgcccactttgatattaaatttattttttgtgggggagggtc 375 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 || || || |||||| | |||| ||| |||||||| |||||||||||| |||| Sbjct: 376 caccatagtggcttgccactagggccttcgtgtgtcgcctaggcgttgcactacagcctt 435 Query: 181 ggcctggcgcaccccaac 198 || ||||||||||||||| Sbjct: 436 gg-ctggcgcaccccaac 452
>dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076a, complete sequence Length = 71794 Score = 159 bits (80), Expect = 1e-35 Identities = 156/180 (86%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 17 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggacta 76 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | Sbjct: 55028 tttggctaagatcaagtgtagtatctgtttttatcagtttaatatctgatatgtgggcca 55087 Query: 77 catgtccacaacgatattaaatttattttttgtgggggagtgcccatcacggtagcttgc 136 ||| || ||||||||||||| ||||||| ||| ||| ||| ||| | ||||||||| Sbjct: 55088 -atggcccacacgatattaaattaattttttaagggtgagggcctatctcagtagcttgc 55146 Query: 137 tgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcacccca 196 ||| |||||||||| ||||||||| |||||||||| |||| |||||||||||| |||| Sbjct: 55147 tgctggggctctcgattgtcgcccatgcgttgcactattgcacgggcctggcgcatccca 55206
>gb|U27085.1|OSU27085 Oryza sativa U2 small nuclear RNA (U2snRNA) gene, complete sequence Length = 623 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 171 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggag 116 |||||||||||| | | |||| || |||||||||||||||||| ||||||||| Sbjct: 172 tctgatatgtgggccatgtgtctactttgatattaaatttatttttcgtgggggag 227
>gb|M72890.1|POTSNRNAD Solanum tuberosum U2 small nuclear RNA, complete CDS Length = 196 Score = 159 bits (80), Expect = 1e-35 Identities = 168/196 (85%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||||| | || ||| |||||||||| | ||||||| |||| || | | Sbjct: 61 tctgatatgtggaccatcggttcac-acgatattaactcaattttttaaggggaagagtc 119 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||| | ||||||||||| || ||||||| || |||||||| | |||||||| ||| | Sbjct: 120 cattaaggtagcttgctacctgggctcttgctcgtcgcccatgtgttgcactactgcacg 179 Query: 181 ggcctggcgcacccca 196 ||||||||| |||||| Sbjct: 180 ggcctggcgtacccca 195
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 153 bits (77), Expect = 7e-34 Identities = 104/113 (92%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92367 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 92308 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | |||| || |||||||||||||||||| |||||| Sbjct: 92307 tctgatatgtgggccatgtgtctactttgatattaaatttatttttcgtgggg 92255
>emb|X15930.1|PSSNU2B Pea U2 snRNA (clone pPSU2.2) Length = 195 Score = 153 bits (77), Expect = 7e-34 Identities = 105/113 (92%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 |||||||||||| | | |||||| |||||||||||||||||| ||| |||| Sbjct: 61 tctgatatgtgggccattggtccac-acgatattaaatttatttcttgagggg 112
>gb|M72888.1|POTSNRNAB Solanum tuberosum U2 small nuclear RNA, complete CDS Length = 195 Score = 151 bits (76), Expect = 3e-33 Identities = 168/196 (85%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | |||||| |||||||||| | ||||| | |||| || | | Sbjct: 61 tctgatatgtgggccattggtccac-acgatattaactcaattttgtaaggggaagagtc 119 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||| | ||||||||||| || ||||||| | | |||| ||| |||||||||| ||| || Sbjct: 120 cattaaggtagcttgctacctgggctcttgggcgtcg-ccatgcgttgcactactgcatg 178 Query: 181 ggcctggcgcacccca 196 | |||||||||||||| Sbjct: 179 gtcctggcgcacccca 194
>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence Length = 111412 Score = 149 bits (75), Expect = 1e-32 Identities = 94/99 (94%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69084 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 69143 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatt 99 |||||||||||||| | |||||| ||||||||||||| Sbjct: 69144 tctgatatgtggaccaatggtccac-acgatattaaatt 69181 Score = 149 bits (75), Expect = 1e-32 Identities = 94/99 (94%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55011 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 55070 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatt 99 |||||||||||||| | |||||| ||||||||||||| Sbjct: 55071 tctgatatgtggaccaatggtccac-acgatattaaatt 55108 Score = 67.9 bits (34), Expect = 3e-08 Identities = 60/68 (88%), Gaps = 3/68 (4%) Strand = Plus / Minus Query: 6 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||| |||||||||||||||||||| ||||| |||| |||||| ||||| | Sbjct: 71307 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaa 71251 Query: 66 tatgtgga 73 |||||||| Sbjct: 71250 tatgtgga 71243 Score = 42.1 bits (21), Expect = 1.9 Identities = 58/69 (84%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 128 gtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctgg 187 |||||||||||| |||||||| |||||||| |||||||||| |||| |||| |||| Sbjct: 69209 gtagcttgctgcttgggctctcaagtgtcgcctttgcgttgcactattgcatggg-ctgg 69267 Query: 188 cgcacccca 196 |||| |||| Sbjct: 69268 cgcatccca 69276
>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence Length = 102831 Score = 149 bits (75), Expect = 1e-32 Identities = 94/99 (94%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32521 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 32580 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatt 99 |||||||||||||| | |||||| ||||||||||||| Sbjct: 32581 tctgatatgtggaccaatggtccac-acgatattaaatt 32618 Score = 149 bits (75), Expect = 1e-32 Identities = 94/99 (94%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18448 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 18507 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatt 99 |||||||||||||| | |||||| ||||||||||||| Sbjct: 18508 tctgatatgtggaccaatggtccac-acgatattaaatt 18545 Score = 67.9 bits (34), Expect = 3e-08 Identities = 60/68 (88%), Gaps = 3/68 (4%) Strand = Plus / Minus Query: 6 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||| |||||||||||||||||||| ||||| |||| |||||| ||||| | Sbjct: 34744 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaa 34688 Query: 66 tatgtgga 73 |||||||| Sbjct: 34687 tatgtgga 34680 Score = 42.1 bits (21), Expect = 1.9 Identities = 58/69 (84%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 128 gtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctgg 187 |||||||||||| |||||||| |||||||| |||||||||| |||| |||| |||| Sbjct: 32646 gtagcttgctgcttgggctctcaagtgtcgcctttgcgttgcactattgcatggg-ctgg 32704 Query: 188 cgcacccca 196 |||| |||| Sbjct: 32705 cgcatccca 32713
>emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project) Length = 86574 Score = 147 bits (74), Expect = 4e-32 Identities = 74/74 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27022 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 26963 Query: 61 tctgatatgtggac 74 |||||||||||||| Sbjct: 26962 tctgatatgtggac 26949
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 145 bits (73), Expect = 2e-31 Identities = 73/73 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2159 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 2218 Query: 61 tctgatatgtgga 73 ||||||||||||| Sbjct: 2219 tctgatatgtgga 2231 Score = 137 bits (69), Expect = 4e-29 Identities = 103/113 (91%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7815 atacttttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 7874 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggg 113 ||||||| |||||||| ||| ||| |||| |||| ||||||||||||||| Sbjct: 7875 tctgatacgtggactatgtgttcactttgata-taaacttattttttgtgggg 7926
>gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete sequence Length = 112126 Score = 145 bits (73), Expect = 2e-31 Identities = 152/177 (85%), Gaps = 1/177 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85329 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 85388 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | | |||| |||||||||| | ||||||||| ||| || || Sbjct: 85389 tctgatatgtgggccatcggcccac-acgatattaactctattttttgagggagatagct 85447 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgc 177 || | | ||||||||| | ||||| ||||| |||||||| |||||||||| |||| Sbjct: 85448 cactaagatagcttgctatctgggctttcgcgagtcgcccatgcgttgcactattgc 85504
>dbj|AB013396.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTI20 Length = 79676 Score = 145 bits (73), Expect = 2e-31 Identities = 152/177 (85%), Gaps = 1/177 (0%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28254 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 28195 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | | |||| |||||||||| | ||||||| |||||| ||| Sbjct: 28194 tctgatatgtgggccatcggcccac-acgatattaactcaattttttaagggggaaagcc 28136 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgc 177 |||| ||||||||||| | ||||| || || ||| |||| |||||||||| |||| Sbjct: 28135 catctaggtagcttgctatctgggctttcccgagtctcccatgcgttgcactattgc 28079
>ref|NM_101543.2| Arabidopsis thaliana unknown protein AT1G16820 mRNA, complete cds Length = 1073 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 18 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 17 tctgatatgtgg 6
>ref|NM_115637.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G57770 mRNA, complete cds Length = 1242 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 18 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 17 tctgatatgtgg 6
>gb|AC007138.1| Arabidopsis thaliana BAC T7B11 from chromosome IV near 10 cM, complete sequence Length = 120185 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58789 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 58848 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 58849 tctgatatgtgg 58860
>gb|AC166741.1| Brassica rapa subsp. pekinensis clone KBrH080C09, complete sequence Length = 132099 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57928 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 57987 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 57988 tctgatatgtgg 57999
>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16 Length = 107271 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57938 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 57879 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 57878 tctgatatgtgg 57867 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20416 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 20475 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 20476 tctgatatgtgg 20487
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44142 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 44201 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 44202 tctgatatgtgg 44213
>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8 Length = 94378 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63308 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 63249 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 63248 tctgatatgtgg 63237 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12431 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 12490 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 12491 tctgatatgtgg 12502
>gb|AC147178.6| Medicago truncatula clone mth2-142i4, complete sequence Length = 114693 Score = 143 bits (72), Expect = 7e-31 Identities = 166/196 (84%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 48006 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 48065 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 ||||||||||| | | | ||| ||||||||||||| ||||||| ||||||| | | Sbjct: 48066 tctgatatgtgatccaatggatcac-acgatattaaattacttttttgagggggagaggc 48124 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 | | |||||||||||| ||| |||| |||||| ||| |||||||||| |||| || Sbjct: 48125 cgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatg 48184 Query: 181 ggcctggcgcacccca 196 ||| ||||||||||| Sbjct: 48185 ggctaggcgcacccca 48200
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence Length = 93868 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9675 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 9616 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 9615 tctgatatgtgg 9604
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence Length = 104016 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33098 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 33157 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 33158 tctgatatgtgg 33169 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30016 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 30075 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 30076 tctgatatgtgg 30087
>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete sequence Length = 90498 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42548 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 42489 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 42488 tctgatatgtgg 42477
>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete sequence Length = 93677 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89245 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 89186 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 89185 tctgatatgtgg 89174
>dbj|AB016887.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2 Length = 15607 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3785 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 3726 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 3725 tctgatatgtgg 3714
>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01 Length = 140261 Score = 143 bits (72), Expect = 7e-31 Identities = 153/179 (85%), Gaps = 2/179 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 14607 atacctttctcggccttttgactaagatcaagtgtagtatctgttcttattagtttaata 14666 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 | ||||| |||| | | ||||||| ||||||||||| | ||||||| ||||| ||| Sbjct: 14667 tatgatacgtgggccatgtgtccac--ggatattaaattagtattttgtgagggagggcc 14724 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || |||||||||| ||| | ||||| ||| |||||||| |||| |||||||| ||||| Sbjct: 14725 caccacggtagctcgctactggggccctcatgtgtcgcctaggctttgcactgctgcct 14783
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0670E08 Length = 133106 Score = 143 bits (72), Expect = 7e-31 Identities = 153/179 (85%), Gaps = 2/179 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 64022 atacctttctcggccttttgactaagatcaagtgtagtatctgttcttattagtttaata 64081 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 | ||||| |||| | | ||||||| ||||||||||| | ||||||| ||||| ||| Sbjct: 64082 tatgatacgtgggccatgtgtccac--ggatattaaattagtattttgtgagggagggcc 64139 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcct 179 || |||||||||| ||| | ||||| ||| |||||||| |||| |||||||| ||||| Sbjct: 64140 caccacggtagctcgctactggggccctcatgtgtcgcctaggctttgcactgctgcct 64198
>emb|X56322.1|STU24G S. tuberosum U2-4 gene for U2 snRNA Length = 1177 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 572 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 573 tctgatatgtgg 584 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Plus Query: 129 tagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctgggcctggc 188 ||||||||| || ||| ||| | | |||||||| |||||||||| ||| ||||||||| Sbjct: 641 tagcttgctacctgggttcttgtgcgtcgcccatgcgttgcactactgcacgggcctggc 700 Query: 189 gcacccca 196 |||||||| Sbjct: 701 gcacccca 708
>emb|X52312.1|ATU26 Arabidopsis thaliana U2.6 snRNA gene for U2 snRNA Length = 550 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 294 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 295 tctgatatgtgg 306
>emb|X06478.1|ATU29 Arabidopsis thaliana U2 RNA gene (U2.9) Length = 359 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 259 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 260 tctgatatgtgg 271
>emb|X06477.1|ATU27 Arabidopsis thaliana U2 RNA gene (U2.7) Length = 842 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 562 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 563 tctgatatgtgg 574
>emb|X06476.1|ATU25 Arabidopsis thaliana U2 RNA gene (U2.5) Length = 748 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 515 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 516 tctgatatgtgg 527
>emb|X06475.1|ATU24 Arabidopsis thaliana U2 RNA gene (U2.4) Length = 884 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 648 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 649 tctgatatgtgg 660
>emb|X06474.1|ATU23 Arabidopsis thaliana U2 RNA gene (U2.3) Length = 867 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 571 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 572 tctgatatgtgg 583
>emb|X06473.1|ATU22 Arabidopsis thaliana U2 RNA gene (U2.2) Length = 848 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 448 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 449 tctgatatgtgg 460
>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project) Length = 92491 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73709 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 73650 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 73649 tctgatatgtgg 73638
>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence Length = 146505 Score = 143 bits (72), Expect = 7e-31 Identities = 72/72 (100%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67620 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 67561 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 67560 tctgatatgtgg 67549
>emb|X15936.1|PSGSNU2 Pea PSU2 gene for U2 snRNA Length = 528 Score = 141 bits (71), Expect = 3e-30 Identities = 71/71 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 315 Query: 61 tctgatatgtg 71 ||||||||||| Sbjct: 316 tctgatatgtg 326
>emb|X56323.1|STU211BG S. tuberosum U2-11B gene for U2 snRNA Length = 871 Score = 141 bits (71), Expect = 3e-30 Identities = 71/71 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 417 Query: 61 tctgatatgtg 71 ||||||||||| Sbjct: 418 tctgatatgtg 428 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 87 acgatattaaatttattttttgtgggggagtgcccatcacggtagcttgct 137 |||||||||| | ||||||||| |||||| | ||| |||||||||||||| Sbjct: 443 acgatattaactctattttttgagggggaaggtccaccacggtagcttgct 493
>emb|X55840.1|STU211G S. tuberosum U2-11 gene for U2 snRNA Length = 589 Score = 141 bits (71), Expect = 3e-30 Identities = 71/71 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 327 Query: 61 tctgatatgtg 71 ||||||||||| Sbjct: 328 tctgatatgtg 338
>gb|M72891.1|POTSNRNAE Solanum tuberosum U2 small nuclear RNA, complete CDS Length = 196 Score = 141 bits (71), Expect = 3e-30 Identities = 71/71 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtg 71 ||||||||||| Sbjct: 61 tctgatatgtg 71
>gb|M72887.1|POTSNRNAA Solanum tuberosum U2 small nuclear RNA, complete CDS Length = 195 Score = 141 bits (71), Expect = 3e-30 Identities = 71/71 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 Query: 61 tctgatatgtg 71 ||||||||||| Sbjct: 61 tctgatatgtg 71
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 139 bits (70), Expect = 1e-29 Identities = 118/133 (88%), Gaps = 2/133 (1%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 13974 atacctttctcagccttttggctaagatcaagtgtagtatctgttattatcagtttaata 13915 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || || || ||||||||||| || ||||||||||||| | | Sbjct: 13914 tctgatatgtgggccatatttc--catggatattaaattaatattttgtgggggagggtc 13857 Query: 121 catcacggtagct 133 || |||||||||| Sbjct: 13856 caccacggtagct 13844
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 139 bits (70), Expect = 1e-29 Identities = 118/133 (88%), Gaps = 2/133 (1%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18652696 atacctttctcagccttttggctaagatcaagtgtagtatctgttattatcagtttaata 18652637 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || || || ||||||||||| || ||||||||||||| | | Sbjct: 18652636 tctgatatgtgggccatatttc--catggatattaaattaatattttgtgggggagggtc 18652579 Query: 121 catcacggtagct 133 || |||||||||| Sbjct: 18652578 caccacggtagct 18652566 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 gcgatggagctggaggcggcg 274 ||||||||||||||||||||| Sbjct: 15483923 gcgatggagctggaggcggcg 15483943
>gb|AF106848.1|AF106848 Oryza sativa U2 small nuclear RNA pseudogene, complete sequence Length = 197 Score = 139 bits (70), Expect = 1e-29 Identities = 149/173 (86%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 26 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggactacatgtccac 85 ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct: 20 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggctatgtgcccat 79 Query: 86 aacgatattaaatttattttttgtgggggagtgcccatcacggtagcttgctgccggggc 145 |||||||||||||||||||||||||||| || || ||| || |||||| | ||| | Sbjct: 80 tgtgatattaaatttattttttgtgggggagggctcaccacagtggcttgccactgggcc 139 Query: 146 tctcgcgtgtcgcccaggcgttgcactgttgcctgggcctggcgcaccccaac 198 || ||| ||||||||||| |||||| | |||| ||||||||||||||||||| Sbjct: 140 tcacgc--gtcgcccaggc-ttgcaccgctgcccgggcctggcgcaccccaac 189
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 139 bits (70), Expect = 1e-29 Identities = 118/133 (88%), Gaps = 2/133 (1%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18663549 atacctttctcagccttttggctaagatcaagtgtagtatctgttattatcagtttaata 18663490 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 |||||||||||| | | || || || ||||||||||| || ||||||||||||| | | Sbjct: 18663489 tctgatatgtgggccatatttc--catggatattaaattaatattttgtgggggagggtc 18663432 Query: 121 catcacggtagct 133 || |||||||||| Sbjct: 18663431 caccacggtagct 18663419 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 gcgatggagctggaggcggcg 274 ||||||||||||||||||||| Sbjct: 15492164 gcgatggagctggaggcggcg 15492184
>ref|XM_464440.1| Oryza sativa (japonica cultivar-group), mRNA Length = 180 Score = 135 bits (68), Expect = 2e-28 Identities = 68/68 (100%) Strand = Plus / Minus Query: 5 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 14 Query: 65 atatgtgg 72 |||||||| Sbjct: 13 atatgtgg 6
>gb|AC121236.18| Medicago truncatula clone mth2-12m19, complete sequence Length = 124839 Score = 135 bits (68), Expect = 2e-28 Identities = 71/72 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 114458 atacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaata 114517 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 114518 tctgatatgtgg 114529 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109191 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 109250 Query: 61 tctgat 66 |||||| Sbjct: 109251 tctgat 109256 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90426 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 90485 Query: 61 tctgat 66 |||||| Sbjct: 90486 tctgat 90491 Score = 123 bits (62), Expect = 6e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 105852 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaata 105911 Query: 61 tctgat 66 |||||| Sbjct: 105912 tctgat 105917 Score = 123 bits (62), Expect = 6e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61727 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 61786 Query: 61 tctgat 66 | |||| Sbjct: 61787 tttgat 61792 Score = 123 bits (62), Expect = 6e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 55717 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaata 55776 Query: 61 tctgat 66 |||||| Sbjct: 55777 tctgat 55782 Score = 119 bits (60), Expect = 1e-23 Identities = 69/72 (95%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 103252 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaata 103311 Query: 61 tctgatatgtgg 72 ||||| |||||| Sbjct: 103312 tctgagatgtgg 103323 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 67098 atacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaata 67157 Query: 61 tctgat 66 | |||| Sbjct: 67158 tttgat 67163 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Plus Query: 6 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 61 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 112808 tttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatat 112863 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 70860 ataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaata 70919 Query: 61 tctgat 66 | |||| Sbjct: 70920 tttgat 70925 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 4 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatct 63 |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 74556 cctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatct 74615 Query: 64 gat 66 ||| Sbjct: 74616 gat 74618 Score = 77.8 bits (39), Expect = 3e-11 Identities = 62/69 (89%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---agttta 57 ||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 98898 ataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagttta 98957 Query: 58 atatctgat 66 ||||||||| Sbjct: 98958 atatctgat 98966
>gb|AC151964.12| Medicago truncatula clone mth2-47g17, complete sequence Length = 117929 Score = 135 bits (68), Expect = 2e-28 Identities = 71/72 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 77521 atacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaata 77580 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 77581 tctgatatgtgg 77592 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72254 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 72313 Query: 61 tctgat 66 |||||| Sbjct: 72314 tctgat 72319 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53492 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 53551 Query: 61 tctgat 66 |||||| Sbjct: 53552 tctgat 53557 Score = 123 bits (62), Expect = 6e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 68915 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaata 68974 Query: 61 tctgat 66 |||||| Sbjct: 68975 tctgat 68980 Score = 123 bits (62), Expect = 6e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24793 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 24852 Query: 61 tctgat 66 | |||| Sbjct: 24853 tttgat 24858 Score = 123 bits (62), Expect = 6e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 18783 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaata 18842 Query: 61 tctgat 66 |||||| Sbjct: 18843 tctgat 18848 Score = 119 bits (60), Expect = 1e-23 Identities = 69/72 (95%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 66315 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaata 66374 Query: 61 tctgatatgtgg 72 ||||| |||||| Sbjct: 66375 tctgagatgtgg 66386 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 30164 atacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaata 30223 Query: 61 tctgat 66 | |||| Sbjct: 30224 tttgat 30229 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Plus Query: 6 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 61 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 75871 tttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatat 75926 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 33926 ataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaata 33985 Query: 61 tctgat 66 | |||| Sbjct: 33986 tttgat 33991 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 4 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatct 63 |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 37622 cctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatct 37681 Query: 64 gat 66 ||| Sbjct: 37682 gat 37684 Score = 77.8 bits (39), Expect = 3e-11 Identities = 62/69 (89%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---agttta 57 ||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 61961 ataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagttta 62020 Query: 58 atatctgat 66 ||||||||| Sbjct: 62021 atatctgat 62029
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 2e-28 Identities = 71/72 (98%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12679568 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatg 12679509 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 12679508 tctgatatgtgg 12679497 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 253 ggcgatggagctggaggcggcgaggcggcgct 284 |||||||| ||||| | ||||||||||||||| Sbjct: 33953587 ggcgatggtgctggtgacggcgaggcggcgct 33953556
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 135 bits (68), Expect = 2e-28 Identities = 71/72 (98%) Strand = Plus / Minus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46597 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatg 46538 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 46537 tctgatatgtgg 46526
>dbj|AB015469.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19B1 Length = 69927 Score = 135 bits (68), Expect = 2e-28 Identities = 71/72 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 6278 atacctttctcggccttttggctaagattaagtgtagtatctgttcttatcagtttaata 6337 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 6338 tctgatatgtgg 6349
>dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9 Length = 51860 Score = 135 bits (68), Expect = 2e-28 Identities = 71/72 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 28824 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtataata 28883 Query: 61 tctgatatgtgg 72 |||||||||||| Sbjct: 28884 tctgatatgtgg 28895
>gb|M72886.1|POTCARSEQ Solanum tuberosum Cara sequence Length = 195 Score = 135 bits (68), Expect = 2e-28 Identities = 166/196 (84%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaata 60 Query: 61 tctgatatgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcc 120 | |||||||||| | | || ||| |||||||||| || ||||||| |||| | | | Sbjct: 61 tttgatatgtgggccattggttcac-acgatattaacttaattttttaaggggaaaagtc 119 Query: 121 catcacggtagcttgctgccggggctctcgcgtgtcgcccaggcgttgcactgttgcctg 180 ||| | ||||||||||| || ||||| | || |||| ||| |||||||||| ||| || Sbjct: 120 cattaaggtagcttgctacctgggcttttgctcgtcg-ccatgcgttgcactactgcttg 178 Query: 181 ggcctggcgcacccca 196 |||||||||||||||| Sbjct: 179 ggcctggcgcacccca 194
>emb|X05084.1|VFU2RNA Broad bean (Vicia faba) U2 small nuclear RNA Length = 193 Score = 133 bits (67), Expect = 7e-28 Identities = 116/131 (88%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 65 Query: 67 atgtggactacatgtccacaacgatattaaatttattttttgtgggggagtgcccatcac 126 |||||| | | ||| || |||||||||||||||||| ||| |||| || | ||| ||| Sbjct: 66 atgtgggcca-atggcccacacgatattaaatttatttcttgaggggaagaggccaccac 124 Query: 127 ggtagcttgct 137 |||||||||| Sbjct: 125 agtagcttgct 135
>ref|XM_467134.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1239 Score = 129 bits (65), Expect = 1e-26 Identities = 68/69 (98%) Strand = Plus / Minus Query: 4 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatct 63 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 cctttctcggcctttttgctaagatcaagtgtagtatctgttcttatcagtttaatatct 15 Query: 64 gatatgtgg 72 ||||||||| Sbjct: 14 gatatgtgg 6
>gb|AC132607.4| Mus musculus BAC clone RP23-447F22 from 12, complete sequence Length = 194101 Score = 127 bits (64), Expect = 4e-26 Identities = 64/64 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37584 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 37643 Query: 67 atgt 70 |||| Sbjct: 37644 atgt 37647
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence Length = 193547 Score = 127 bits (64), Expect = 4e-26 Identities = 64/64 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41971 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 41912 Query: 67 atgt 70 |||| Sbjct: 41911 atgt 41908
>gb|AC120391.6| Mus musculus chromosome 1, clone RP24-310B3, complete sequence Length = 172679 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134847 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 134906 Query: 67 a 67 | Sbjct: 134907 a 134907
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65162 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65103 Query: 67 a 67 | Sbjct: 65102 a 65102
>gb|AF147270.1| Papio hamadryas anubis U2 repeat unit sequence Length = 10589 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9436 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9495 Query: 67 a 67 | Sbjct: 9496 a 9496
>gb|AF287992.1| Pan troglodytes U2 small nuclear RNA, complete sequence Length = 6107 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4923 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 4982 Query: 67 a 67 | Sbjct: 4983 a 4983
>gb|AF287991.1| Gorilla gorilla U2 small nuclear RNA, complete sequence Length = 6137 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4903 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 4962 Query: 67 a 67 | Sbjct: 4963 a 4963
>gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's Hospital Oakland Research Institute) complete sequence Length = 237425 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39793 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 39734 Query: 67 a 67 | Sbjct: 39733 a 39733
>gb|AC159964.5| Mus musculus chromosome 1, clone RP24-321N12, complete sequence Length = 179413 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39857 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 39916 Query: 67 a 67 | Sbjct: 39917 a 39917
>emb|CR932438.14| Zebrafish DNA sequence from clone DKEY-250O4 in linkage group 13, complete sequence Length = 56325 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30094 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 30153 Query: 67 a 67 | Sbjct: 30154 a 30154 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24516 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 24457 Query: 67 a 67 | Sbjct: 24456 a 24456
>emb|BX004997.17| Zebrafish DNA sequence from clone DKEY-46E6 in linkage group 7, complete sequence Length = 200556 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81654 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 81595 Query: 67 a 67 | Sbjct: 81594 a 81594
>emb|CR670819.2|CNS0FGKP Tetraodon nigroviridis full-length cDNA Length = 556 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>emb|CR660998.3|CNS0F8ZW Tetraodon nigroviridis full-length cDNA Length = 554 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 64 Query: 67 a 67 | Sbjct: 65 a 65
>gb|BC100035.1| Danio rerio nucleoporin 205, mRNA (cDNA clone MGC:111802 IMAGE:3818096), complete cds Length = 6312 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>gb|AC118772.5| Rattus norvegicus 10 BAC CH230-404C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 178272 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82785 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 82726 Query: 67 a 67 | Sbjct: 82725 a 82725 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtat 40 ||||| ||| |||||||||||||| ||||||||| Sbjct: 39934 ttctcagccctttggctaagatcaggtgtagtat 39967
>emb|AL929108.5| Zebrafish DNA sequence from clone CH211-239J9 in linkage group 6 Contains the 3' part of a novel gene similar to human and mouse SPAG1 (sperm associated antigen 1), a novel gene similar to human and mouse COX6C (cytochrome c oxidase, subunit VIc), a novel gene, a novel gene similar to mouse and human MBC2 (membrane bound C2 domain containing protein), a novel gene similar to vertebrate ITGB4BP (integrin beta 4 binding protein), the 3' part of novel gene similar to vertebrate MMP24 (membrane-inserted matrix metalloproteinase 24) and two predicted CpG islands, complete sequence Length = 161277 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75597 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 75656 Query: 67 a 67 | Sbjct: 75657 a 75657
>emb|AL603711.6| Mouse DNA sequence from clone RP23-381B19 on chromosome 11 Contains the 3' end of the Slfn3 gene for schlafen 3, a novel gene, two schlafen (Slfn) pseudogenes, the Pex12 gene for peroxisomal biogenesis factor 12 and the Ap2b1 gene for adaptor-related protein complex 2 beta 1 subunit, complete sequence Length = 204523 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134713 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 134654 Query: 67 a 67 | Sbjct: 134653 a 134653
>emb|BX927129.10| Zebrafish DNA sequence from clone DKEY-158N21 in linkage group 13, complete sequence Length = 154491 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100719 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 100778 Query: 67 a 67 | Sbjct: 100779 a 100779 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97350 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 97291 Query: 67 a 67 | Sbjct: 97290 a 97290
>gb|AC124036.5| Mus Musculus Strain C57BL6/J chromosome 11 BAC Clone RP24-100D7, Complete Sequence, complete sequence Length = 228907 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17260 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 17319 Query: 67 a 67 | Sbjct: 17320 a 17320
>dbj|AK022146.1| Homo sapiens cDNA FLJ12084 fis, clone HEMBB1002502 Length = 1955 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>dbj|AK169668.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430005M15 product:RAD52 homolog B (S. cerevisiae), full insert sequence Length = 2084 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>dbj|AB179181.1| Macaca fascicularis testis cDNA clone: QtsA-14313, similar to human p21(CDKN1A)-activated kinase 6 (PAK6), mRNA, RefSeq: NM_020168.3 Length = 2549 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in linkage group 7, complete sequence Length = 233826 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96110 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 96051 Query: 67 a 67 | Sbjct: 96050 a 96050
>gb|U57614.1|HSU57614 Homo sapiens U2 snRNA (RNU2) gene, complete sequence of the repeat unit Length = 6132 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4887 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 4946 Query: 67 a 67 | Sbjct: 4947 a 4947
>gb|AC114905.10| Mus musculus chromosome 1, clone RP24-127K21, complete sequence Length = 168918 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33144 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 33203 Query: 67 a 67 | Sbjct: 33204 a 33204 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22349 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 22408 Query: 67 a 67 | Sbjct: 22409 a 22409 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15082 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 15141 Query: 67 a 67 | Sbjct: 15142 a 15142 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4376 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 4435 Query: 67 a 67 | Sbjct: 4436 a 4436
>emb|X00093.1|XLRNU2 Xenopus laevis U2 snRNA gene Length = 831 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 424 Query: 67 a 67 | Sbjct: 425 a 425
>emb|X04212.1|RNU2RNA Rat (Novikoff hepatoma) U2 small nuclear RNA Length = 187 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>gb|AC120136.9| Mus musculus chromosome 1, clone RP23-277E3, complete sequence Length = 190159 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171909 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 171968 Query: 67 a 67 | Sbjct: 171969 a 171969 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 161114 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 161173 Query: 67 a 67 | Sbjct: 161174 a 161174 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153847 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 153906 Query: 67 a 67 | Sbjct: 153907 a 153907 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143141 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 143200 Query: 67 a 67 | Sbjct: 143201 a 143201
>emb|X07913.1|MMU2SNR Mouse U2 snRNA gene Length = 1325 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 1125 Query: 67 a 67 | Sbjct: 1126 a 1126
>gb|L37793.1|HUMU2SN Homo sapiens small nuclear RNA (U2) gene Length = 5834 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4589 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 4648 Query: 67 a 67 | Sbjct: 4649 a 4649
>emb|AL713883.1|CNS07YP0 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 179H3 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 168835 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74821 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 74880 Query: 67 a 67 | Sbjct: 74881 a 74881
>gb|M19204.1|HUMUG21 Human small nuclear U2 RNA gene Length = 187 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>gb|K02227.1|HUMUG2 Human U2 small nuclear RNA gene U2.24A Length = 379 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 256 Query: 67 a 67 | Sbjct: 257 a 257
>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete sequence Length = 207814 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99739 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 99798 Query: 67 a 67 | Sbjct: 99799 a 99799 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87421 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 87362 Query: 67 a 67 | Sbjct: 87361 a 87361 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83249 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 83308 Query: 67 a 67 | Sbjct: 83309 a 83309 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68867 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 68926 Query: 67 a 67 | Sbjct: 68927 a 68927 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46351 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 46410 Query: 67 a 67 | Sbjct: 46411 a 46411
>gb|K02457.1|XELUGU2 X. laevis U2 small nuclear RNA gene Length = 188 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 65 Query: 67 a 67 | Sbjct: 66 a 66
>gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene Length = 840 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 425 Query: 67 a 67 | Sbjct: 426 a 426
>emb|X01408.1|HSU2G Human gene for small nuclear RNA U2 Length = 540 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 323 Query: 67 a 67 | Sbjct: 324 a 324
>gb|K00033.1|RATUG2PA rat u2 small nuclear rna pseudogene Length = 298 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 115 Query: 67 a 67 | Sbjct: 116 a 116
>gb|K00034.1|RATUG2A rat u2 small nuclear rna gene and flanks Length = 930 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 484 Query: 67 a 67 | Sbjct: 485 a 485
>emb|X02665.1|HSSNRU2 Human gene for small nuclear RNA U2 (snRNA U2) Length = 975 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 323 Query: 67 a 67 | Sbjct: 324 a 324
>gb|K00027.1|MUSUG2A mouse u2 small nuclear rna (snrna) gene Length = 379 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 211 Query: 67 a 67 | Sbjct: 212 a 212
>gb|K00781.1|RATUR2 Rat U2 small nuclear RNA Length = 189 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 Query: 67 a 67 | Sbjct: 67 a 67
>gb|K03023.1|HUMUG2A Human small nuclear RNA U2 gene Length = 896 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 621 Query: 67 a 67 | Sbjct: 622 a 622
>gb|K03022.1|HUMUG20 Human U2 small nuclear RNA gene, clone U2/6 Length = 757 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 278 Query: 67 a 67 | Sbjct: 279 a 279
>gb|M33777.1|BABUGU2A Baboon U2 small nuclear RNA gene, complete cds Length = 680 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 255 Query: 67 a 67 | Sbjct: 256 a 256
>dbj|AP001160.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-727F15, complete sequences Length = 184802 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119105 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 119046 Query: 67 a 67 | Sbjct: 119045 a 119045
>dbj|AP000438.5| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-43M24, complete sequence Length = 148710 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9204 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9145 Query: 67 a 67 | Sbjct: 9144 a 9144
>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence Length = 129008 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 5 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 64 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 50419 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctg 50478 Query: 65 atatgtgg 72 |||||||| Sbjct: 50479 atatgtgg 50486
>gb|AC149080.14| Medicago truncatula clone mth2-75j5, complete sequence Length = 96907 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Minus Query: 5 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 64 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 20621 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctg 20562 Query: 65 atatgtgg 72 |||||||| Sbjct: 20561 atatgtgg 20554
>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14, complete sequence Length = 151836 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 85803 ttctcggccttttggctaagatcaagtgtagtatctgttattatcagtttaatatctgat 85862 Query: 67 atgt 70 |||| Sbjct: 85863 atgt 85866
>gb|AC087650.12| Homo sapiens, clone RP11-100E5, complete sequence Length = 169598 Score = 113 bits (57), Expect = 6e-22 Identities = 60/61 (98%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57859 ttctcgtccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 57800 Query: 67 a 67 | Sbjct: 57799 a 57799
>emb|X01463.1|HSUG2P Human pseudogene U2/7 for U2 small nuclear RNA Length = 1824 Score = 113 bits (57), Expect = 6e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 ttctcgtccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 975 Query: 67 a 67 | Sbjct: 976 a 976
>dbj|AK127427.1| Homo sapiens cDNA FLJ45519 fis, clone BRTHA2024177 Length = 2898 Score = 113 bits (57), Expect = 6e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 ttctcgtccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 1408 Query: 67 a 67 | Sbjct: 1409 a 1409
>ref|NG_001257.1| Homo sapiens RNA, U2 small nuclear pseudogene 2 (RNU2P2) on chromosome 17 Length = 289 Score = 113 bits (57), Expect = 6e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106 ttctcgtccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 165 Query: 67 a 67 | Sbjct: 166 a 166
>gb|K02228.1|HUMUG2PS Human U2 small nuclear RNA pseudogene U2.21 Length = 366 Score = 113 bits (57), Expect = 6e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 ttctcgtccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 242 Query: 67 a 67 | Sbjct: 243 a 243
>emb|AL139801.17| Human DNA sequence from clone RP11-247M1 on chromosome 13 Contains a novel FLJ21562 containing gene, a novel gene, a novel pseudogene and a CpG island, complete sequence Length = 145481 Score = 111 bits (56), Expect = 2e-21 Identities = 63/64 (98%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 23026 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcag-ttaatatctgat 23084 Query: 67 atgt 70 |||| Sbjct: 23085 atgt 23088
>emb|AL133387.8| Human DNA sequence from clone RP11-107I14 on chromosome 10 Contains the 3' end of a novel gene, three novel genes (FLJ34886), the 5' end of the BTRC gene for beta-transducin repeat containing and four CpG islands, complete sequence Length = 157912 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 131677 ttctcggccttttggctaagatcaagtgtagtatctgttctcatcagtttagtatctgat 131618 Query: 67 atgt 70 |||| Sbjct: 131617 atgt 131614 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 tctcggccttttggctaagatcaagtgtagtat 40 |||||| ||||||||||||||||| |||||||| Sbjct: 74182 tctcggtcttttggctaagatcaaatgtagtat 74214
>gb|AC157323.2| Dasypus novemcinctus, clone Dasypus novemcinctus-10241775F5, complete sequence Length = 40662 Score = 111 bits (56), Expect = 2e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 11 cggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 70 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 37526 cggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatatgt 37467
>dbj|AP003068.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-399J13, complete sequence Length = 187934 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107654 ttctcagccttttgggtaagatcaagtgtagtatctgttcttatcagtttaatatctgat 107713 Query: 67 atgt 70 |||| Sbjct: 107714 atgt 107717
>dbj|AP001873.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2011H1, complete sequence Length = 44621 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2388 ttctcagccttttgggtaagatcaagtgtagtatctgttcttatcagtttaatatctgat 2447 Query: 67 atgt 70 |||| Sbjct: 2448 atgt 2451
>gb|AC137905.8| Mus musculus chromosome 15, clone RP23-334B11, complete sequence Length = 210548 Score = 107 bits (54), Expect = 4e-20 Identities = 54/54 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193180 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 193233
>gb|AC138131.16| Medicago truncatula clone mth2-21h11, complete sequence Length = 127696 Score = 107 bits (54), Expect = 4e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 ||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||| Sbjct: 51226 atacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaata 51285 Query: 61 tctgatatgtggac 74 ||| |||||||||| Sbjct: 51286 tcttatatgtggac 51299
>gb|AY007785.1| Diplonema papillatum spliced leader RNA and 5S ribosomal RNA genes, complete sequence Length = 1242 Score = 107 bits (54), Expect = 4e-20 Identities = 59/61 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 854 ttctcggccttttggctaagatcaagngtagtatctgttcttatcagcttaatatctgat 913 Query: 67 a 67 | Sbjct: 914 a 914
>gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, complete sequence Length = 180231 Score = 107 bits (54), Expect = 4e-20 Identities = 54/54 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157974 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 157921 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtg 34 |||| ||||||||||||||||||||||| Sbjct: 130435 ttcttggccttttggctaagatcaagtg 130462
>gb|AF095839.1|AF095839 Entosiphon sulcatum trans-spliced leader SL, 5S ribosomal RNA, U5 snRNA, U1 snRNA, and U2 snRNA genes, complete sequence Length = 2521 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 1581 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagcttaatttctgat 1522 Query: 67 at 68 || Sbjct: 1521 at 1520
>emb|AL731833.7| Mouse DNA sequence from clone RP23-72P19 on chromosome X, complete sequence Length = 170932 Score = 107 bits (54), Expect = 4e-20 Identities = 57/58 (98%) Strand = Plus / Minus Query: 10 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 67 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 65850 tcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgata 65793
>gb|AC107059.6| Homo sapiens BAC clone RP11-668G10 from 4, complete sequence Length = 48546 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 16905 ttcttggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatccgat 16846 Query: 67 a 67 | Sbjct: 16845 a 16845
>emb|X00381.1|HSRN07 Human pseudogene for U2 small nuclear RNA Length = 117 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 26 ttcttggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatccgat 85 Query: 67 a 67 | Sbjct: 86 a 86
>gb|AC099784.2| Homo sapiens chromosome 1 clone RP11-159C21, complete sequence Length = 163167 Score = 103 bits (52), Expect = 6e-19 Identities = 52/52 (100%) Strand = Plus / Minus Query: 6 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 57 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 69133
>gb|AC129569.17| Mus musculus chromosome 5, clone RP23-121M13, complete sequence Length = 199799 Score = 103 bits (52), Expect = 6e-19 Identities = 52/52 (100%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91174 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 91123
>emb|AL392044.7| Human DNA sequence from clone RP11-195E11 on chromosome 9 Contains the 5' end of a novel gene (MGC21981), three novel genes and a CpG island, complete sequence Length = 167206 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Minus Query: 16 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 70 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 166624 ttttggctaagatcaagtgtagtatctgttcttataagtttaatatctgatatgt 166570
>gb|AC008677.5| Homo sapiens chromosome 5 clone CTB-47B8, complete sequence Length = 160929 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 16 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 70 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 107611 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgatatgt 107665
>ref|NG_001256.1| Homo sapiens RNA, U2 small nuclear pseudogene 3 (RNU2P3) on chromosome 9 Length = 177 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 16 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 70 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 15 ttttggctaagatcaagtgtagtatctgttcttataagtttaatatctgatatgt 69
>gb|K00779.1|HUMUG2PA human u2.7 small nuclear rna pseudogene Length = 177 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 16 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 70 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 15 ttttggctaagatcaagtgtagtatctgttcttataagtttaatatctgatatgt 69
>gb|AY765368.1| Crassostrea gigas clone 3B 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1091 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 645 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 586 Query: 66 ta 67 || Sbjct: 585 ta 584
>gb|AY765367.1| Crassostrea gigas clone 3A 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1100 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 654 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 595 Query: 66 ta 67 || Sbjct: 594 ta 593
>gb|AY765366.1| Crassostrea gigas clone 2A 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1114 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 666 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 607 Query: 66 ta 67 || Sbjct: 606 ta 605
>gb|AY765365.1| Crassostrea gigas clone 1B 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1096 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 650 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 591 Query: 66 ta 67 || Sbjct: 590 ta 589
>gb|AY765364.1| Crassostrea gigas clone 1A 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1117 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 669 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 610 Query: 66 ta 67 || Sbjct: 609 ta 608
>gb|AY765362.1| Crassostrea angulata clone 3A 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1090 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 645 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 586 Query: 66 ta 67 || Sbjct: 585 ta 584
>gb|AY765361.1| Crassostrea angulata clone 2B 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1103 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 656 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 597 Query: 66 ta 67 || Sbjct: 596 ta 595
>gb|AY765360.1| Crassostrea angulata clone 2A 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1093 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 646 ttctcggccttttggctaagatcaaagtgtagtatctgttcttatcagcttaatatctga 587 Query: 66 ta 67 || Sbjct: 586 ta 585
>emb|CR679054.3|CNS0FMWQ Tetraodon nigroviridis full-length cDNA Length = 539 Score = 99.6 bits (50), Expect = 9e-18 Identities = 50/50 (100%) Strand = Plus / Plus Query: 18 ttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 67 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 50
>emb|AL158828.14| Human DNA sequence from clone RP11-359J6 on chromosome 9 Contains a novel gene and a novel pseudogene, complete sequence Length = 213728 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 38356 ttctcagccttttggctaagatcgggtgtagtatctgttcttatcagtttaatatctgat 38297 Query: 67 at 68 || Sbjct: 38296 at 38295
>emb|AL138795.21| Human DNA sequence from clone RP4-790G17 on chromosome 1q21.1-21.3 Contains the ANP32E gene for acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, the CA14 gene for carbonic anhydrase XIV, the gene for a likely ortholog of C. elegans anterior pharynx defective 1A (APH-1A), the gene for a novel protein (FLJ23221), a novel gene and the MRPS21 gene for mitochondrial ribosomal protein S21, complete sequence Length = 132823 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 51112 ttctctgccttttggctaagatcaagtgtaggatctgttcttaacagtttaatatctgat 51171 Query: 67 at 68 || Sbjct: 51172 at 51173
>ref|NR_002716.1| Homo sapiens RNA, U2 small nuclear (RNU2) on chromosome 17 Length = 186 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/61 (96%), Gaps = 2/61 (3%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttc--atcagtttaatatctgat 63 Query: 67 a 67 | Sbjct: 64 a 64
>emb|Z37972.1|STU2SRN15 S.tuberosum gene encoding U2 snRNA Length = 229 Score = 99.6 bits (50), Expect = 9e-18 Identities = 53/54 (98%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcatatcagt 54
>emb|AL591390.8| Mouse DNA sequence from clone RP23-355L10 on chromosome 11, complete sequence Length = 186134 Score = 99.6 bits (50), Expect = 9e-18 Identities = 60/62 (96%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 6 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31765 tttctcagccttttg-ctaagatcaagtgtagtatctgttcttatcagtttaatatctga 31823 Query: 66 ta 67 || Sbjct: 31824 ta 31825
>emb|X59360.1|HSU2SNRNA H.sapiens U2 snRNA Length = 186 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/61 (96%), Gaps = 2/61 (3%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttc--atcagtttaatatctgat 63 Query: 67 a 67 | Sbjct: 64 a 64
>emb|AL445988.8| Human DNA sequence from clone RP11-625P7 on chromosome 6 Contains a novel gene, complete sequence Length = 63196 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 5 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 61 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 16632 ctttctcagccttttggctaagatctagtgtagtatctgttcttatcagtttaatat 16576
>gb|AC147121.2| Mus musculus BAC clone RP24-160L14 from chromosome 7, complete sequence Length = 185191 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Minus Query: 12 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 59 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128178 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 128131 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgta 36 |||||||||||||||||||||||||||||| Sbjct: 120221 ttctcggccttttggctaagatcaagtgta 120250
>emb|X63786.1|TTSNRU23 T.thermophila genes for snRNA U2-3, snRNA U2-4 Length = 1412 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1157 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 1204 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 601
>emb|X63785.1|TTSNRU22 T.thermophila gene for snRNA U2-2 Length = 1283 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 796
>emb|X63784.1|TTSNRU21 T.thermophila gene for snRNA U2-1 Length = 877 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 464
>emb|X58846.1|TTU22 T.thermophila U2.2 snRNA Length = 193 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 53
>emb|X58842.1|TTU21 T.thermophila U2.1 snRNA Length = 193 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 53
>emb|AL590452.12| Human DNA sequence from clone RP11-326G21 on chromosome 1 Contains the 5' end of the PDE4DIP gene for phosphodiesterase 4D interacting protein (myomegalin) and a CpG island, complete sequence Length = 156813 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 42446 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagcttaa 42497
>gb|AC128649.5| Homo sapiens 12 BAC RP11-728G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167071 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 126548 ttctcggcctttttgctaagatcaagtgtagtatctgttcttatcagtttaa 126599
>gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, complete sequence Length = 208510 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 14 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 61 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114614 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 114661
>gb|AC018922.22| Homo sapiens 12 BAC RP11-485C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166256 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 146729 ttctcggcctttttgctaagatcaagtgtagtatctgttcttatcagtttaa 146678
>gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complete sequence Length = 168880 Score = 95.6 bits (48), Expect = 1e-16 Identities = 61/64 (95%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 110723 ttctcagccttttggctaagatcaagtgtagtatctgtt-ttttcagtttaatatctgat 110665 Query: 67 atgt 70 |||| Sbjct: 110664 atgt 110661
>gb|AC011994.10| Homo sapiens BAC clone RP11-50E1 from 2, complete sequence Length = 176933 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 82247 ttctcggccttttggctaagaccaagtgtagtatctgttcttatcagtttaa 82196
>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete sequence Length = 163726 Score = 95.6 bits (48), Expect = 1e-16 Identities = 60/64 (93%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 60372 ttcttggccttttggctaagatcaagtatagtatctgttcttatcagttcaatatatgat 60313 Query: 67 atgt 70 |||| Sbjct: 60312 atgt 60309
>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence Length = 228892 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Minus Query: 12 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 59 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31063 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 31016 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgta 36 |||||||||||||||||||||||||||||| Sbjct: 23106 ttctcggccttttggctaagatcaagtgta 23135
>gb|DQ114948.1| Moneuplotes crassus clone pEC1 U2 snRNA gene, complete sequence; macronuclear Length = 545 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 188
>emb|AL133500.4|HSP12 Homo sapiens chromosome X sequence from BAC CEPHB328P12 map Xq13 region PHKA1-DXS227, complete sequence Length = 201387 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 12 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 67 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 66176 ggccttttggctaagttcaagtgtagtatctgtccttatcagtttaatatctgata 66121
>emb|AL596457.6| Human DNA sequence from clone RP11-523P2 on chromosome Xq13.1-13.3, complete sequence Length = 86688 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Plus Query: 12 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 67 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 50313 ggccttttggctaagttcaagtgtagtatctgtccttatcagtttaatatctgata 50368
>gb|K00786.1|HUMUG2PB human u2.13 small nuclear rna pseudogene Length = 88 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 23 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagcttaa 74
>gb|AY765363.1| Crassostrea angulata clone 3B 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1103 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/62 (95%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| Sbjct: 657 ttctcggccttttggctaagatcaaagtgnagtatctgttcttatcagcttaatatctga 598 Query: 66 ta 67 || Sbjct: 597 ta 596
>gb|AY765359.1| Crassostrea angulata clone 1B 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1091 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/62 (95%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| Sbjct: 645 ttctcggccttttggctaagatcaaagngtagtatctgttcttatcagcttaatatctga 586 Query: 66 ta 67 || Sbjct: 585 ta 584
>ref|NM_001014854.2| Bos taurus WD repeat domain 74 (WDR74), mRNA Length = 1763 Score = 93.7 bits (47), Expect = 6e-16 Identities = 47/47 (100%) Strand = Plus / Plus Query: 21 gctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 67 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 47
>gb|AC165154.2| Mus musculus BAC clone RP23-302C3 from chromosome 14, complete sequence Length = 225721 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 42903 ttctgggccttttggctaagatcaagtatagtatctgttcttatcagtttaatgtctga 42961
>emb|AL161454.10| Human DNA sequence from clone RP11-72B4 on chromosome 9 Contains the gene for a novel protein similar to putative repair and recombination helicase RAD26L (LOC56959), a parkinson disease 7 (PARK7) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 144536 Score = 93.7 bits (47), Expect = 6e-16 Identities = 47/47 (100%) Strand = Plus / Minus Query: 12 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111590 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 111544
>gb|S64585.1| SpU2E=U2 snRNA [Strongylocentrotus purpuratus=sea urchins, Genomic, 910 nt] Length = 910 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 504 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 562
>gb|S64581.1| LvU2E=U2 snRNA [Lytechinus variegatus=sea urchins, Genomic, 1046 nt] Length = 1046 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 740 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 798
>gb|S64577.1| LvU2L=U2 snRNA [Lytechinus variegatus=sea urchins, Genomic, 1204 nt] Length = 1204 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 899 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 957
>ref|NR_002566.1| Strongylocentrotus purpuratus RNA, U2 small nuclear (U2) Length = 910 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 504 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 562
>gb|AC007394.4| Homo sapiens BAC clone RP11-489G12 from 2, complete sequence Length = 171468 Score = 93.7 bits (47), Expect = 6e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 61 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 121400 ttctcagccttttggctaagatcaagtgtagtagctgttcttatcagtttaatat 121454
>gb|BT021738.1| Bos taurus hypothetical protein FLJ10439 (FLJ10439), mRNA, complete cds Length = 1763 Score = 93.7 bits (47), Expect = 6e-16 Identities = 47/47 (100%) Strand = Plus / Plus Query: 21 gctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 67 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctaagatcaagtgtagtatctgttcttatcagtttaatatctgata 47
>emb|AJ505688.1|ATH505688 Arabidopsis thaliana partial putative U2 small nuclear RNA (U2 snRNA gene), clone Ath-191a, 5' end incomplete Length = 166 Score = 93.7 bits (47), Expect = 6e-16 Identities = 47/47 (100%) Strand = Plus / Plus Query: 26 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 72 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 47
>gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosome 14, complete sequence Length = 210602 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 187840 ttctgggccttttggctaagatcaagtatagtatctgttcttatcagtttaatgtctga 187898
>gb|S64589.1|S64589 {U2} [Lytechinus variegatus=sea urchins, snRNA, 189 nt] Length = 189 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 6 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 64
>gb|M58447.1|SUSUG2E Strongylocentrotus purpuratus U2 snRNA (SpU2E) gene Length = 920 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 512 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 570
>gb|M58449.1|SULUG2L Lytechinus variegatus U2 snRNA (LvU2L) gene Length = 1204 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 899 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 957
>gb|M58448.1|SULUG2E Lytechinus variegatus U2 snRNA (LvU2E) gene Length = 1060 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 65 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 740 ttctcggccttttggctaagatcatgtgtagtatctgttcttttcagcttaatatctga 798
>gb|AY765358.1| Crassostrea angulata clone 1A 5S ribosomal RNA and U2 small nuclear RNA genes, complete sequence Length = 1103 Score = 91.7 bits (46), Expect = 2e-15 Identities = 59/62 (95%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 ||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| Sbjct: 657 ttctcggccttttggctaagatcaaagagtagtatctgttcttatcagcttaatatctga 598 Query: 66 ta 67 || Sbjct: 597 ta 596
>gb|AC165172.2| Zea mays clone CH201-171E16, complete sequence Length = 180971 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 5 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 64 |||||||||||||||||||||||| | ||||| ||| | |||||||||||||||||| || Sbjct: 101152 ctttctcggccttttggctaagataatgtgtaatatttattcttatcagtttaatatatg 101093 Query: 65 atatgtggac 74 |||||||||| Sbjct: 101092 atatgtggac 101083 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 6 tttctcggccttttggctaagatcaagtgta 36 |||||| |||||||||||||||| ||||||| Sbjct: 135785 tttctctgccttttggctaagataaagtgta 135755
>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence Length = 177385 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 14 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatct 63 |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2354 ccttttggctaagaacaagtgtagtatctgttcttatcagtttaatatct 2403
>emb|Z37973.1|STU2SRN30 S.tuberosum gene encoding U2 snRNA Length = 228 Score = 91.7 bits (46), Expect = 2e-15 Identities = 46/46 (100%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 46 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 46
>gb|AC004388.1|AC004388 Homo Sapiens Chromosome X clone bWXD306, complete sequence Length = 243041 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct: 80111 ttctcagccttttggctaagatagagtgtagtatctgttcctatcagtttaatatctgat 80170 Query: 67 at 68 || Sbjct: 80171 at 80172 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaa 31 ||||| ||||||||||||||||||| Sbjct: 84964 ttctcagccttttggctaagatcaa 84988
>gb|L22247.1|NEMSNUB Ascaris lumbricoides small nuclear RNA (snRNA) U2-1 gene, and U2-2 pseudogene Length = 6806 Score = 91.7 bits (46), Expect = 2e-15 Identities = 62/66 (93%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 |||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||| Sbjct: 6326 ttctcggcctattggctaagatcaaagtgtagtatctgttcttatcagcttaatctctga 6385 Query: 66 tatgtg 71 |||||| Sbjct: 6386 tatgtg 6391 Score = 91.7 bits (46), Expect = 2e-15 Identities = 62/66 (93%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaa-gtgtagtatctgttcttatcagtttaatatctga 65 |||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||| Sbjct: 481 ttctcggcctattggctaagatcaaagtgtagtatctgttcttatcagcttaatctctga 422 Query: 66 tatgtg 71 |||||| Sbjct: 421 tatgtg 416
>gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, complete sequence Length = 187888 Score = 89.7 bits (45), Expect = 9e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 59 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 122750 ttctcggtcttttggctaagaccaagtgtagtatctgttcttatcagtttaat 122802 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 16 ttttggctaagatcaagtgtagtatctgttcttatcagtttaat 59 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165205 ttttggctaagatcaagtgtagtatctgttcttatcagtttaat 165248
>emb|AL445930.11| Human DNA sequence from clone RP11-366O20 on chromosome 9 Contains the 5' end of a novel gene, the PPP6C gene for protein phosphatase 6 (catalytic subunit), a novel gene, a phosphoribosyl pyrophosphate synthetase 1(PRPS1) pseudogene, a laminin receptor 1 (LAMR1) pseudogene, the 5' end of the gene for Rab9 effector p40 (RAB9P40), and five CpG islands, complete sequence Length = 169149 Score = 89.7 bits (45), Expect = 9e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 59 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 61594 ttcttggccttttggccaagatcaagtgtagtatctgttcttatcagtttaat 61646
>gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, complete sequence Length = 184133 Score = 89.7 bits (45), Expect = 9e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 14 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 70 ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 165686 cctttgggctaagatcaagtctagtaactgttcttatcagtttaatatctgatatgt 165742
>gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, complete sequence Length = 180339 Score = 89.7 bits (45), Expect = 9e-15 Identities = 48/49 (97%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtt 55 ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 172136 ttctcagccttttggctaagatcaagtgtagtatctgttcttatcagtt 172184
>ref|NG_001258.1| Homo sapiens RNA, U2 small nuclear pseudogene 1 (RNU2P1) Length = 310 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 49 ttcttggccttttagctaagatcaagtgtagtatctgtttttatcagtttaatatatgat 108 Query: 67 a 67 | Sbjct: 109 a 109
>gb|AC015574.8|AC015574 Homo sapiens, clone RP11-44B21, complete sequence Length = 150288 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 102109 ttcttggccttttagctaagatcaagtgtagtatctgtttttatcagtttaatatatgat 102168 Query: 67 a 67 | Sbjct: 102169 a 102169
>emb|X01479.1|HSRNU2P Human snRNA U2-like DNA sequence Length = 233 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 49 ttcttggccttttagctaagatcaagtgtagtatctgtttttatcagtttaatatatgat 108 Query: 67 a 67 | Sbjct: 109 a 109
>gb|K03024.1|HUMUG2PC Human U2 small nuclear RNA pseudogene, clone U2/4 Length = 310 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 66 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 49 ttcttggccttttagctaagatcaagtgtagtatctgtttttatcagtttaatatatgat 108 Query: 67 a 67 | Sbjct: 109 a 109
>gb|AC152944.2| Mus musculus 10 BAC RP23-427I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179149 Score = 87.7 bits (44), Expect = 4e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 54 ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 92684 ttctcagccttttggctaagatcaagtgtagtatctgttcttatcagt 92731
>gb|DQ158857.1| Bigelowiella natans nucleomorph chromosome 2, partial sequence Length = 134144 Score = 87.7 bits (44), Expect = 4e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 2 tacctttctcggccttttggctaagatcaagtgtagtatctgttctta 49 ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 121769 tacctatctcggccttttggctaagatcaagtgtagtatctgttctta 121722
>gb|AC135000.2| Homo sapiens 3 BAC RP11-483E7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70753 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 2546 ttctcggccttttagctaagatcaagtggagtatctgttcttatcagtttaa 2597
>gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete sequence Length = 152468 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||| | |||||||||||||||||||| || ||||||| |||||||||||||| Sbjct: 141667 atacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaata 141726 Query: 61 tctgatatgtgg 72 | |||||||||| Sbjct: 141727 tttgatatgtgg 141738
>gb|AC148238.4| Medicago truncatula clone mth2-4a11, complete sequence Length = 98424 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 1 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaata 60 |||||||||| | |||||||||||||||||||| || ||||||| |||||||||||||| Sbjct: 6018 atacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaata 6077 Query: 61 tctgatatgtgg 72 | |||||||||| Sbjct: 6078 tttgatatgtgg 6089
>gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, complete sequence Length = 212598 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Minus Query: 16 ttttggctaagatcaagtgtagtatctgttcttatcagtttaat 59 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179865 ttttggctaagatcaagtgtagtatctgttcttatcagtttaat 179822
>gb|AC010150.3| Homo sapiens BAC clone RP11-404P12 from 2, complete sequence Length = 173893 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 25462 ttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaa 25411
>gb|AC099850.7| Homo sapiens chromosome 17, clone CTD-2510F5, complete sequence Length = 210344 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 7 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 58 ||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 134773 ttctcagccttttggctaagatcaagtgtagtatctgtttttatcagtttaa 134824 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,111,633 Number of Sequences: 3902068 Number of extensions: 5111633 Number of successful extensions: 140341 Number of sequences better than 10.0: 3043 Number of HSP's better than 10.0 without gapping: 3040 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 129837 Number of HSP's gapped (non-prelim): 10365 length of query: 552 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 529 effective length of database: 17,143,297,704 effective search space: 9068804485416 effective search space used: 9068804485416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
