ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart15g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, comp... 42 1.8
2gb|AC116350.2| Homo sapiens chromosome 5 clone RP11-357F12, comp... 42 1.8
3gb|AC022463.5| Homo sapiens BAC clone RP11-562N2 from 4, complet... 42 1.8
4gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosom... 42 1.8
5ref|XM_493873.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
6emb|AL157409.16| Human DNA sequence from clone RP5-823D19 on chr... 40 7.2
7gb|AC008035.12| Homo sapiens 12 BAC RP11-446N19 (Roswell Park Ca... 40 7.2
8gb|AC068993.14| Homo sapiens 12 BAC RP11-123M21 (Roswell Park Ca... 40 7.2
9gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein re... 40 7.2
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.2
12gb|S68356.1|S68356 Aplysia sp. action potential broadening potas... 40 7.2
13dbj|AK101136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
14emb|AJ271735.1|HSA271735 Homo sapiens Xq pseudoautosomal region;... 40 7.2
15gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
16gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
17dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.2
18dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 7.2 
>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence
          Length = 256556

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 129    ggtgaaagcctctgacccctccatc 153
              |||| ||||||||||||||||||||
Sbjct: 101850 ggtgcaagcctctgacccctccatc 101874
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>gb|AC116350.2| Homo sapiens chromosome 5 clone RP11-357F12, complete sequence
          Length = 183009

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   actggggcctgtcggaggagt 445
             |||||||||||||||||||||
Sbjct: 94633 actggggcctgtcggaggagt 94653
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>gb|AC022463.5| Homo sapiens BAC clone RP11-562N2 from 4, complete sequence
          Length = 190080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   actggggcctgtcggaggagt 445
             |||||||||||||||||||||
Sbjct: 72448 actggggcctgtcggaggagt 72468
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>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence
          Length = 225957

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 129   ggtgaaagcctctgacccctccatc 153
             |||| ||||||||||||||||||||
Sbjct: 46735 ggtgcaagcctctgacccctccatc 46711
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>ref|XM_493873.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1833

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  gagtgcaggcaatgggttgcccat 107
           |||||||||||||||| |||||||
Sbjct: 295 gagtgcaggcaatggggtgcccat 318
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>emb|AL157409.16| Human DNA sequence from clone RP5-823D19 on chromosome 1q42.11-43
             Contains the 5' end of the SIPA1L2 gene for signal-induced
             proliferation-associated 1 like 2, complete sequence
          Length = 143798

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   gtgcagctggtgtccttcac 512
             ||||||||||||||||||||
Sbjct: 72775 gtgcagctggtgtccttcac 72756
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>gb|AC008035.12| Homo sapiens 12 BAC RP11-446N19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104000

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   actggggcctgtcggaggag 444
             ||||||||||||||||||||
Sbjct: 43634 actggggcctgtcggaggag 43615
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>gb|AC068993.14| Homo sapiens 12 BAC RP11-123M21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 186383

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   actggggcctgtcggaggag 444
             ||||||||||||||||||||
Sbjct: 12471 actggggcctgtcggaggag 12452
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>gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5)
             gene, exons 10 through 23 and complete cds
          Length = 64475

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   agctgtggaccctggactgg 429
             ||||||||||||||||||||
Sbjct: 16456 agctgtggaccctggactgg 16437
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     gagtgcaggcaatgggttgcccat 107
              |||||||||||||||| |||||||
Sbjct: 125991 gagtgcaggcaatggggtgcccat 126014
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 467     cgtacgcggcggaggtgccg 486
               ||||||||||||||||||||
Sbjct: 8321213 cgtacgcggcggaggtgccg 8321194
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>gb|S68356.1|S68356 Aplysia sp. action potential broadening potassium channel (Shab)
            mRNA, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gaggagtcgctcaagaggat 458
            ||||||||||||||||||||
Sbjct: 2500 gaggagtcgctcaagaggat 2519
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>dbj|AK101136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026H11, full
           insert sequence
          Length = 2750

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  gagtgcaggcaatgggttgcccat 107
           |||||||||||||||| |||||||
Sbjct: 887 gagtgcaggcaatggggtgcccat 910
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>emb|AJ271735.1|HSA271735 Homo sapiens Xq pseudoautosomal region; segment 1/2
          Length = 240000

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   actggggcctgtcggaggag 444
             ||||||||||||||||||||
Sbjct: 56611 actggggcctgtcggaggag 56592
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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
            complete sequence
          Length = 160603

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   gagtgcaggcaatgggttgcccat 107
            |||||||||||||||| |||||||
Sbjct: 8179 gagtgcaggcaatggggtgcccat 8202
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>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
              complete sequence
          Length = 156772

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     gagtgcaggcaatgggttgcccat 107
              |||||||||||||||| |||||||
Sbjct: 125991 gagtgcaggcaatggggtgcccat 126014
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>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete
              sequence
          Length = 198720

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    agctgtggaccctggactgg 429
              ||||||||||||||||||||
Sbjct: 152937 agctgtggaccctggactgg 152918
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>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete
              sequence
          Length = 204439

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    agctgtggaccctggactgg 429
              ||||||||||||||||||||
Sbjct: 100006 agctgtggaccctggactgg 99987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,209,784
Number of Sequences: 3902068
Number of extensions: 3209784
Number of successful extensions: 60818
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60702
Number of HSP's gapped (non-prelim): 116
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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