ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart15g02 |
|---|---|
| Clone Library Name | barley_pub |
>YIDH_SCHPO (Q9UTC2) Hypothetical protein C227.17c in chromosome I| Length = 121 Score = 42.4 bits (98), Expect = 9e-04 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 423 FDALWFCYTPLHQLQNYYRHGDFDTCFGKWGDLVDCLSLKTK 548 FD + C T Q+ +YYR+G+++ C G + D CLS K+K Sbjct: 40 FDQMAMCLTVFSQMNHYYRYGEYNRCKGNFKDFKWCLSTKSK 81
>EMI1_YEAST (Q04406) Early meiotic induction protein 1| Length = 187 Score = 39.3 bits (90), Expect = 0.007 Identities = 21/64 (32%), Positives = 35/64 (54%) Frame = +3 Query: 309 GSSSAEVRKAVISMEPKEKPETTSAAIPPPPRLDCIKCFDALWFCYTPLHQLQNYYRHGD 488 G S V+++ S+ K++ +T P + C + FD L CY+ Q ++YYR+GD Sbjct: 79 GDGSIRVKES--SLRKKQERMSTKY----PTTMSCREAFDQLTSCYSIGGQFRSYYRYGD 132 Query: 489 FDTC 500 F +C Sbjct: 133 FTSC 136
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 33.9 bits (76), Expect = 0.31 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +3 Query: 258 STVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPP 401 S E T + VPP GSS + I +E E+PE T A+ P P Sbjct: 440 SKAEVTNGETRVPPQNGGSSESPAAPRTIKVEAAEEPEATRASGPGEP 487
>NR1H2_MOUSE (Q60644) Oxysterols receptor LXR-beta (Liver X receptor beta)| (Nuclear orphan receptor LXR-beta) (Ubiquitously-expressed nuclear receptor) (Retinoid X receptor-interacting protein No.15) Length = 446 Score = 32.7 bits (73), Expect = 0.69 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +3 Query: 246 AASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPPRLD---CI 416 +A++ T+++ ++ PP GSSSA + V+ +EP+++PE P P L C Sbjct: 23 SATSPTIKEEGQETDPPPGSEGSSSAYI---VVILEPEDEPERKRKKGPAPKMLGHELCR 79 Query: 417 KCFD 428 C D Sbjct: 80 VCGD 83
>OXAA_VIBPA (Q87TR5) Inner membrane protein oxaA| Length = 540 Score = 32.7 bits (73), Expect = 0.69 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = +3 Query: 333 KAVISMEPKEKPETTSAAIPPPPRLDCIKCFDALWFCYTPLHQLQNYYRHGDFDTCFGKW 512 +A + + PK + E + A P LD + + LWF PLH L + + G W Sbjct: 301 EATLWVGPKLQQEMAAVA----PNLDLVVDYGWLWFIAKPLHSLLAF-----IQSFVGNW 351 Query: 513 GDLVDCLS 536 G + CL+ Sbjct: 352 GVAIICLT 359
>AMYG_HORRE (Q03045) Glucoamylase P precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 616 Score = 32.7 bits (73), Expect = 0.69 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = +1 Query: 439 SAIPRSTSCRTTTATGILTPASASGAISLTVS 534 +A+P T+C ++ GI TPA+A+GA ++T S Sbjct: 473 NALPPPTTCSASSTPGIYTPATAAGAPNVTSS 504
>OXAA_VIBCH (Q9KVY4) Inner membrane protein oxaA| Length = 541 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = +3 Query: 333 KAVISMEPKEKPETTSAAIPPPPRLDCIKCFDALWFCYTPLHQLQNYYRHGDFDTCFGKW 512 +A + + PK + + + A P LD + + LWF PLH L + T G W Sbjct: 302 EATLWVGPKLQDQMAATA----PNLDLVVDYGWLWFIAKPLHWLLSV-----IQTFVGNW 352 Query: 513 GDLVDCLS 536 G + CL+ Sbjct: 353 GVAIICLT 360
>YB64_YEAST (P38314) Protein YBR214W| Length = 527 Score = 31.6 bits (70), Expect = 1.5 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = +3 Query: 195 PEVGTAPAST-LSVLGLGAASASTVEQTRRDCPVPPSRCGSSSA--EVRKAVISMEPKEK 365 PE T+ +ST L+ A + S Q+ + P S+ SS++ + +ME Sbjct: 399 PESSTSASSTNLTAANTAANAVSATAQSSANGATPMSKSSSSTSLNSHSPLMTAMEDPPS 458 Query: 366 PETTSAAIPPP 398 P +++ AIPPP Sbjct: 459 PRSSAIAIPPP 469
>NR1H2_RAT (Q62755) Oxysterols receptor LXR-beta (Liver X receptor beta)| (Nuclear orphan receptor LXR-beta) (Ubiquitously-expressed nuclear receptor) (UR) (Orphan nuclear receptor OR-1) Length = 446 Score = 31.6 bits (70), Expect = 1.5 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +3 Query: 246 AASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPPRLD---CI 416 ++++ T+++ ++ PP GSSSA + V+ +EP+++PE P P L C Sbjct: 23 SSTSPTIKEEGQETDPPPGSEGSSSAYI---VVILEPEDEPERKRKKGPAPKMLGHELCR 79 Query: 417 KCFD 428 C D Sbjct: 80 VCGD 83
>EPLIN_HUMAN (Q9UHB6) Epithelial protein lost in neoplasm| Length = 759 Score = 31.2 bits (69), Expect = 2.0 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 10/82 (12%) Frame = +3 Query: 195 PEVGTAPASTLSVLGLGAASASTVEQTRRDCPV----------PPSRCGSSSAEVRKAVI 344 P V AP + + VL + ++ +Q + D P PP+ GSS + + + + Sbjct: 491 PGVEDAPIAKVGVLAASMEAKASSQQEKEDKPAETKKLRIAWPPPTELGSSGSALEEGIK 550 Query: 345 SMEPKEKPETTSAAIPPPPRLD 410 +PK PE + P +D Sbjct: 551 MSKPKWPPEDEISKPEVPEDVD 572
>SYFB_PROAC (Q6A7V6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 839 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -2 Query: 542 LERETVNEIAPLAEAGVKIPVAVVVLQLVERGIAEP*CIEALYAVQPRWRWD 387 + R+T+N P G K+P V+ L G+ ++L+ V P WR D Sbjct: 423 MPRQTINADLPNRILGTKVPTEEVIEILTRSGVKVTALGDSLHLVAPTWRPD 474
>EPLIN_MOUSE (Q9ERG0) Epithelial protein lost in neoplasm (mEPLIN)| Length = 753 Score = 31.2 bits (69), Expect = 2.0 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%) Frame = +3 Query: 195 PEVGTAPASTLSVLGLGAASASTVEQTRRDCPV----------PPSRCGSSSAEVRKAVI 344 P V AP + + VL + ++ ++ R D P PP+ GSS + + + + Sbjct: 489 PGVEDAPIAKVGVLAASMEAKASSQREREDKPAETKKLRIAWPPPAELGSSGSALEEGIK 548 Query: 345 SMEPKEKPETTSAAIPPPPRLD 410 +PK PE P +D Sbjct: 549 VSKPKWPPEDDVCKTEAPEDVD 570
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +3 Query: 243 GAASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPPR 404 G++S+S+ ++R PP R S + R+ S P + S+ PPP+ Sbjct: 355 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPK 408
>NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding protein| (DNA-binding protein R kappa-B) Length = 1299 Score = 30.8 bits (68), Expect = 2.6 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +3 Query: 249 ASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPE--TTSAAIPPPP 401 A+A+ + + P PPS+ SSS E V+S P E+ + + +++PP P Sbjct: 667 AAAAKARKALQQKPKPPSKVKSSSKESSIKVLSSGPSEQSQMSLSDSSMPPTP 719
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 30.8 bits (68), Expect = 2.6 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +3 Query: 288 PVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPP 401 P PP+ G S + A + P P TTSAA PPPP Sbjct: 471 PPPPASLGQSQIP-QSAPSAPIPPTLPSTTSAAPPPPP 507
>PKN1_HUMAN (Q16512) Serine/threonine-protein kinase N1 (EC 2.7.11.13) (Protein| kinase C-like 1) (Protein-kinase C-related kinase 1) (Protein kinase C-like PKN) (Serine-threonine protein kinase N) (Protein kinase PKN-alpha) Length = 942 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = +3 Query: 198 EVGTAPASTLSVLGLGAASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETT 377 E T ++ L LG S S+ +++ RD PPS S S+ ++++ P E ET Sbjct: 541 EARTTGDISVEKLNLGTDSDSSPQKSSRD---PPSSPSSLSSPIQESTAPELPSETQETP 597 Query: 378 SAAIPPPPR 404 A+ P R Sbjct: 598 GPALCSPLR 606
>K1C13_HUMAN (P13646) Keratin, type I cytoskeletal 13 (Cytokeratin-13) (CK-13)| (Keratin-13) (K13) Length = 458 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 436 GSAIPRSTSCRTTTATGILTPASASGAISLTVSR 537 GS PRSTS TT++ + T ++ASG + V R Sbjct: 424 GSVSPRSTSVTTTSSASVTTTSNASGRRTSDVRR 457
>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog| Length = 775 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Frame = +3 Query: 177 HVQAS-EPEVGTAPAST----LSVLGLGAASASTVEQTRR-DCPVPPSRCGSSSAEVR 332 HV S +P V AP+ LS AA+A+ VEQ R + P PP GSSS R Sbjct: 111 HVDGSTKPAVLAAPSGLERYGLSAAAAAAAAAAAVEQRSRFEYPPPPVSLGSSSHAAR 168
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.0 bits (66), Expect = 4.5 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +3 Query: 243 GAASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPPR 404 G++S+S+ ++R PP R S + R+ S P + S PPP+ Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPK 410
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -1 Query: 426 RSTLCSPAAVEVGWQRWSSRASLWAPCL*PPSSPQRCCCHSGLG 295 +S+ C P + G ++S PC S + CCC SG G Sbjct: 116 QSSCCKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCG 159
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.0 bits (66), Expect = 4.5 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +3 Query: 243 GAASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPPR 404 G++S+S+ ++R PP R S + R+ S P + S PPP+ Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPK 410
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/71 (25%), Positives = 25/71 (35%) Frame = -1 Query: 507 CRSRCQNPRXXXXXXXXXXGYSRTIVHRSTLCSPAAVEVGWQRWSSRASLWAPCL*PPSS 328 C+S C P + +S+ C P G ++S PC S Sbjct: 146 CQSSCCKP------SCSQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSC 199 Query: 327 PQRCCCHSGLG 295 + CCC SG G Sbjct: 200 CKPCCCSSGCG 210
>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor| (Stranded at second protein) Length = 1693 Score = 30.0 bits (66), Expect = 4.5 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 295 GTGQSLLVCSTVDAEAAPSPKTD 227 GTG+S + T D EA P P+TD Sbjct: 623 GTGESAVTLPTTDDEATPKPRTD 645
>CAPU_DROME (Q24120) Protein cappuccino| Length = 1059 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 303 RCGSSSAEVRKAVISMEPKEKPETTSAAIPPPP 401 +CG SS +V + E EKP + PPPP Sbjct: 459 KCGQSSTKVSDNESAKEDGEKPHAVAPPPPPPP 491
>CN004_HUMAN (Q9H1B7) Protein C14orf4| Length = 796 Score = 29.6 bits (65), Expect = 5.9 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 7/80 (8%) Frame = +3 Query: 177 HVQASEPEVGTAPASTLSVLGLGAASASTV-------EQTRRDCPVPPSRCGSSSAEVRK 335 HV S A S L GL AA+A+ +++R + P PP GSSS R Sbjct: 130 HVDGSSKPAVLAAPSGLERYGLSAAAAAAAAAAAAVEQRSRFEYPPPPVSLGSSSHTARL 189 Query: 336 AVISMEPKEKPETTSAAIPP 395 P P+ T PP Sbjct: 190 PNGLGGPNGFPKPTPEEGPP 209
>ICEN_XANCT (P18127) Ice nucleation protein| Length = 1567 Score = 29.6 bits (65), Expect = 5.9 Identities = 24/76 (31%), Positives = 35/76 (46%) Frame = +3 Query: 174 VHVQASEPEVGTAPASTLSVLGLGAASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISME 353 VH+ A+EP +APA+ + L + + + T PS + S + +A S E Sbjct: 127 VHMPAAEP---SAPATQATSATLPTPATPSTQAT-------PSTQSTQSTQSTEATQSTE 176 Query: 354 PKEKPETTSAAIPPPP 401 P T AA PPPP Sbjct: 177 AT--PVATVAAAPPPP 190
>BCK1_YEAST (Q01389) Serine/threonine-protein kinase BCK1/SLK1/SSP31 (EC| 2.7.11.1) Length = 1478 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Frame = +3 Query: 183 QASEPEVGTAPASTLSVLG----LGAASAST-VEQTRRDCPVPPSRCGSSSAEVRKAVIS 347 +A +P T+P TLS + AST + +++R P+PP S + S Sbjct: 807 EAPKPPANTSPQRTLSTSKQNKPIRLVRASTKISRSKRSKPLPPQLLSSPIEASSSSPDS 866 Query: 348 MEPKEKPETTSAAIPPP 398 + P +T IP P Sbjct: 867 LTSSYTPASTHVLIPQP 883
>OXAA_VIBVY (Q7MQK5) Inner membrane protein oxaA| Length = 539 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 399 PRLDCIKCFDALWFCYTPLHQLQNYYRHGDFDTCFGKWGDLVDCLS 536 P LD + + LWF PLH L + + G WG + CL+ Sbjct: 318 PNLDLVVDYGWLWFIAKPLHWLLSV-----IQSFVGNWGVAIICLT 358
>OXAA_VIBVU (Q8DDI2) Inner membrane protein oxaA| Length = 539 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 399 PRLDCIKCFDALWFCYTPLHQLQNYYRHGDFDTCFGKWGDLVDCLS 536 P LD + + LWF PLH L + + G WG + CL+ Sbjct: 318 PNLDLVVDYGWLWFIAKPLHWLLSV-----IQSFVGNWGVAIICLT 358
>LRP5_HUMAN (O75197) Low-density lipoprotein receptor-related protein 5| precursor Length = 1615 Score = 29.3 bits (64), Expect = 7.7 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = -1 Query: 348 CL*PPSSP-QRCCCHSGLGVLDNPFLFA-----LLWMPKQLQALKLTMLMPELFQ--LQV 193 CL PS P C C +G+ + DN +L + ++ ++++ P+ LQV Sbjct: 310 CLLSPSEPFYTCACPTGVQLQDNGRTCKAGAEEVLLLARRTDLRRISLDTPDFTDIVLQV 369 Query: 192 PKLEHALPIDWSP 154 + HA+ ID+ P Sbjct: 370 DDIRHAIAIDYDP 382
>ANDR_PAPHA (O97960) Androgen receptor (Dihydrotestosterone receptor)| Length = 895 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +1 Query: 4 RHQPAAAAQPAGRSLRCPAAQQRLPPSSSRSHQQRG 111 RH AA+A P G SL+ QQ+ S + QQ+G Sbjct: 40 RHPEAASAAPPGASLQQQQQQQQQETSPRQQQQQQG 75
>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)| Length = 1004 Score = 25.4 bits (54), Expect(2) = 9.0 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 260 HSRANKKGLSSTPKPLWQQQR*GEE 334 HS G S P P W +R GEE Sbjct: 96 HSNPPDSGSSGPPDPTWGPERRGEE 120 Score = 21.9 bits (45), Expect(2) = 9.0 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +3 Query: 366 PETTSAAIPPPP 401 PE+T A PPPP Sbjct: 154 PESTPAPPPPPP 165
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = +3 Query: 288 PVPPSRCGSSSAEVRKAVISMEPKEKPETTSAAIPPPPR 404 P PPS S A A S +P P S PPPPR Sbjct: 239 PAPPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPPPR 277
>KSGA_ZYMMO (Q5NMX2) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 278 Score = 28.9 bits (63), Expect = 10.0 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +3 Query: 198 EVGTAPASTLSVLGLGAASASTVEQTRRDCPVPPSRCGSSSAEVRKAVISMEPKEKPETT 377 +VGT LSVL + A R VPP + V AV+ + PK++PE Sbjct: 161 KVGTPHYGRLSVLAQWRSEAKLSFPVHRSAFVPPPK-------VMSAVVHLTPKDQPEGL 213 Query: 378 S 380 S Sbjct: 214 S 214
>TOLB_BURPS (Q63RA8) Protein tolB precursor| Length = 433 Score = 28.9 bits (63), Expect = 10.0 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = -3 Query: 400 GGGGMAALVVSGFSLGSM---LITAFLTSALLLPQRLGGTGQSLLV----CSTVDAEAAP 242 GG A + V +GS + TA + LPQ++ + L S VDA + P Sbjct: 21 GGAAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVVRGDLARSGKFSNVDAGSTP 80 Query: 241 SPKTDNVDAGAVPTSGSEA 185 P+T +VD GA G+ A Sbjct: 81 VPETASVDFGAWKAKGANA 99
>TOLB_BURMA (Q62I10) Protein tolB precursor| Length = 433 Score = 28.9 bits (63), Expect = 10.0 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = -3 Query: 400 GGGGMAALVVSGFSLGSM---LITAFLTSALLLPQRLGGTGQSLLV----CSTVDAEAAP 242 GG A + V +GS + TA + LPQ++ + L S VDA + P Sbjct: 21 GGAAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVVRGDLARSGKFSNVDAGSTP 80 Query: 241 SPKTDNVDAGAVPTSGSEA 185 P+T +VD GA G+ A Sbjct: 81 VPETASVDFGAWKAKGANA 99
>MFD_MYXXA (O52236) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1201 Score = 28.9 bits (63), Expect = 10.0 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Frame = -3 Query: 436 HSASKHFMQSSRGGGGMAALVVSGFSLGSMLITAFLTSALL--LPQRLGGTGQSLLVCST 263 H S H R GG A VV G + T L A + RL G ++ LVC Sbjct: 14 HGHSLHTDAGRRRGGRPFAQVVDELRAGQRVRTQGLKGAARGHVLARLHGALRAPLVCVA 73 Query: 262 VDAEAAPSPKTD 227 VD EAA + D Sbjct: 74 VDEEAADALAAD 85
>LRP6_HUMAN (O75581) Low-density lipoprotein receptor-related protein 6| precursor Length = 1613 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Frame = -1 Query: 348 CL*PPSSP-QRCCCHSGLGVLDN-----PFLFALLWMPKQLQALKLTMLMPELFQ--LQV 193 CL P P +C C +G+ +L+N LL + ++ ++++ P+ LQ+ Sbjct: 297 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL 356 Query: 192 PKLEHALPIDWSP 154 + HA+ ID+ P Sbjct: 357 EDIRHAIAIDYDP 369 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,501,023 Number of Sequences: 219361 Number of extensions: 1529057 Number of successful extensions: 6048 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 5596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6017 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
