Clone Name | bart15g02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 127 bits (64), Expect = 4e-26 Identities = 127/148 (85%) Strand = Plus / Plus Query: 399 ccgcggctggactgcataaagtgcttcgatgcactatggttctgctataccccgctccac 458 ||||||| ||||||| | ||||||||||| || || ||||||||||| | ||| | || Sbjct: 19850799 ccgcggccggactgcgtgaagtgcttcgacgcgctgtggttctgctactcgccgtactac 19850858 Query: 459 cagctgcagaactactaccgccacggggattttgacacctgcttcggcaagtggggcgat 518 |||||||||||||||||||| ||||| || || |||| |||||||||||||||||| || Sbjct: 19850859 cagctgcagaactactaccggcacggcgagttcgacaactgcttcggcaagtggggggac 19850918 Query: 519 ctcgttgactgtctctcgctcaagacga 546 ||||| |||||||||| ||||||||||| Sbjct: 19850919 ctcgtcgactgtctctggctcaagacga 19850946
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 127 bits (64), Expect = 4e-26 Identities = 127/148 (85%) Strand = Plus / Plus Query: 399 ccgcggctggactgcataaagtgcttcgatgcactatggttctgctataccccgctccac 458 ||||||| ||||||| | ||||||||||| || || ||||||||||| | ||| | || Sbjct: 75239 ccgcggccggactgcgtgaagtgcttcgacgcgctgtggttctgctactcgccgtactac 75298 Query: 459 cagctgcagaactactaccgccacggggattttgacacctgcttcggcaagtggggcgat 518 |||||||||||||||||||| ||||| || || |||| |||||||||||||||||| || Sbjct: 75299 cagctgcagaactactaccggcacggcgagttcgacaactgcttcggcaagtggggggac 75358 Query: 519 ctcgttgactgtctctcgctcaagacga 546 ||||| |||||||||| ||||||||||| Sbjct: 75359 ctcgtcgactgtctctggctcaagacga 75386
>gb|AY110695.1| Zea mays CL20158_1 mRNA sequence Length = 942 Score = 79.8 bits (40), Expect = 9e-12 Identities = 103/124 (83%) Strand = Plus / Minus Query: 397 caccgcggctggactgcataaagtgcttcgatgcactatggttctgctataccccgctcc 456 |||| ||||||||||||||||| ||||| ||| || |||||||| || | || ||| Sbjct: 750 caccacggctggactgcataaaatgctttgatatgctctggttctgttactcaccattcc 691 Query: 457 accagctgcagaactactaccgccacggggattttgacacctgcttcggcaagtggggcg 516 ||||| ||||||| || ||||| | ||||| || ||||||||||||||||||||||||| Sbjct: 690 accagatgcagaattattaccggtatggggagttcgacacctgcttcggcaagtggggcg 631 Query: 517 atct 520 |||| Sbjct: 630 atct 627
>gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, complete sequence Length = 202869 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 ggcatccacagtagagcaaacaagaa 279 |||||||||||||||| ||||||||| Sbjct: 79222 ggcatccacagtagaggaaacaagaa 79197
>ref|XM_602313.2| PREDICTED: Bos taurus similar to phosphatidylinositol transfer protein, membrane-associated 2 (LOC523999), mRNA Length = 5303 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 accagcagcgtggagcagccg 118 ||||||||||||||||||||| Sbjct: 3218 accagcagcgtggagcagccg 3198
>emb|CR734200.2|CNS0GTAF Tetraodon nigroviridis full-length cDNA Length = 1325 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tcccaccagcagcgtggagca 114 ||||||||||||||||||||| Sbjct: 12 tcccaccagcagcgtggagca 32
>gb|DQ168582.1| Calliphora vicina caupolican-like protein mRNA, partial cds Length = 1878 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 agccgctgtggcagcagcagc 320 ||||||||||||||||||||| Sbjct: 375 agccgctgtggcagcagcagc 395
>ref|XM_509457.1| PREDICTED: Pan troglodytes similar to phosphatidylinositol transfer protein, membrane-associated 2; PYK2 N-terminal domain-interacting receptor 3; retinal degeneration B alpha 2 (Drosophila) (LOC452339), mRNA Length = 2858 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 accagcagcgtggagcagcc 117 |||||||||||||||||||| Sbjct: 1642 accagcagcgtggagcagcc 1623
>ref|XM_844201.1| PREDICTED: Canis familiaris similar to phosphatidylinositol transfer protein, membrane-associated 2, transcript variant 2 (LOC477454), mRNA Length = 3913 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccagcagcgtggagcagccg 118 |||||||||||||||||||| Sbjct: 2429 ccagcagcgtggagcagccg 2410
>ref|XM_534652.2| PREDICTED: Canis familiaris similar to phosphatidylinositol transfer protein, membrane-associated 2, transcript variant 1 (LOC477454), mRNA Length = 3412 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccagcagcgtggagcagccg 118 |||||||||||||||||||| Sbjct: 1928 ccagcagcgtggagcagccg 1909
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 gccgctgtggcagcagcagcgctg 324 |||||||||||||| ||||||||| Sbjct: 2048184 gccgctgtggcagctgcagcgctg 2048161
>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12, complete sequence Length = 173914 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gatgcactatggttctgcta 445 |||||||||||||||||||| Sbjct: 24497 gatgcactatggttctgcta 24516
>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence Length = 218647 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 attgtcagttttagggcttg 243 |||||||||||||||||||| Sbjct: 99752 attgtcagttttagggcttg 99733
>gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B15, complete sequence Length = 117928 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 acaagaagggattgtccagt 292 |||||||||||||||||||| Sbjct: 59283 acaagaagggattgtccagt 59302
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctgtggcagcagcagcgct 323 |||||||||||||||||||| Sbjct: 24724583 gctgtggcagcagcagcgct 24724564
>gb|AC010285.4|AC010285 Homo sapiens chromosome 5 clone CTC-563A5, complete sequence Length = 124289 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 acaagaagggattgtccagt 292 |||||||||||||||||||| Sbjct: 85609 acaagaagggattgtccagt 85628
>dbj|AB040890.2| Homo sapiens mRNA for KIAA1457 protein, partial cds Length = 6799 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 accagcagcgtggagcagcc 117 |||||||||||||||||||| Sbjct: 2626 accagcagcgtggagcagcc 2607
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctgtggcagcagcagcgct 323 |||||||||||||||||||| Sbjct: 114106 gctgtggcagcagcagcgct 114087 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,904,655 Number of Sequences: 3902068 Number of extensions: 3904655 Number of successful extensions: 71671 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71556 Number of HSP's gapped (non-prelim): 112 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)