ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart15g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
2dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
3gb|AY110695.1| Zea mays CL20158_1 mRNA sequence 80 9e-12
4gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, comple... 44 0.48
5ref|XM_602313.2| PREDICTED: Bos taurus similar to phosphatidylin... 42 1.9
6emb|CR734200.2|CNS0GTAF Tetraodon nigroviridis full-length cDNA 42 1.9
7gb|DQ168582.1| Calliphora vicina caupolican-like protein mRNA, p... 42 1.9
8ref|XM_509457.1| PREDICTED: Pan troglodytes similar to phosphati... 40 7.4
9ref|XM_844201.1| PREDICTED: Canis familiaris similar to phosphat... 40 7.4
10ref|XM_534652.2| PREDICTED: Canis familiaris similar to phosphat... 40 7.4
11gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 7.4
12emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 ... 40 7.4
13gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, co... 40 7.4
14gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B... 40 7.4
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
16gb|AC010285.4|AC010285 Homo sapiens chromosome 5 clone CTC-563A5... 40 7.4
17dbj|AB040890.2| Homo sapiens mRNA for KIAA1457 protein, partial cds 40 7.4
18emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 40 7.4

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  127 bits (64), Expect = 4e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                            
Query: 399      ccgcggctggactgcataaagtgcttcgatgcactatggttctgctataccccgctccac 458
                ||||||| ||||||| | ||||||||||| || || |||||||||||  | |||  | ||
Sbjct: 19850799 ccgcggccggactgcgtgaagtgcttcgacgcgctgtggttctgctactcgccgtactac 19850858

                                                                            
Query: 459      cagctgcagaactactaccgccacggggattttgacacctgcttcggcaagtggggcgat 518
                |||||||||||||||||||| ||||| || || |||| |||||||||||||||||| || 
Sbjct: 19850859 cagctgcagaactactaccggcacggcgagttcgacaactgcttcggcaagtggggggac 19850918

                                            
Query: 519      ctcgttgactgtctctcgctcaagacga 546
                ||||| |||||||||| |||||||||||
Sbjct: 19850919 ctcgtcgactgtctctggctcaagacga 19850946



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>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0034B12
          Length = 124083

 Score =  127 bits (64), Expect = 4e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                         
Query: 399   ccgcggctggactgcataaagtgcttcgatgcactatggttctgctataccccgctccac 458
             ||||||| ||||||| | ||||||||||| || || |||||||||||  | |||  | ||
Sbjct: 75239 ccgcggccggactgcgtgaagtgcttcgacgcgctgtggttctgctactcgccgtactac 75298

                                                                         
Query: 459   cagctgcagaactactaccgccacggggattttgacacctgcttcggcaagtggggcgat 518
             |||||||||||||||||||| ||||| || || |||| |||||||||||||||||| || 
Sbjct: 75299 cagctgcagaactactaccggcacggcgagttcgacaactgcttcggcaagtggggggac 75358

                                         
Query: 519   ctcgttgactgtctctcgctcaagacga 546
             ||||| |||||||||| |||||||||||
Sbjct: 75359 ctcgtcgactgtctctggctcaagacga 75386



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>gb|AY110695.1| Zea mays CL20158_1 mRNA sequence
          Length = 942

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 103/124 (83%)
 Strand = Plus / Minus

                                                                       
Query: 397 caccgcggctggactgcataaagtgcttcgatgcactatggttctgctataccccgctcc 456
           |||| ||||||||||||||||| ||||| |||   || |||||||| ||  | ||  |||
Sbjct: 750 caccacggctggactgcataaaatgctttgatatgctctggttctgttactcaccattcc 691

                                                                       
Query: 457 accagctgcagaactactaccgccacggggattttgacacctgcttcggcaagtggggcg 516
           ||||| ||||||| || |||||  | ||||| || |||||||||||||||||||||||||
Sbjct: 690 accagatgcagaattattaccggtatggggagttcgacacctgcttcggcaagtggggcg 631

               
Query: 517 atct 520
           ||||
Sbjct: 630 atct 627



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>gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, complete sequence
          Length = 202869

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 254   ggcatccacagtagagcaaacaagaa 279
             |||||||||||||||| |||||||||
Sbjct: 79222 ggcatccacagtagaggaaacaagaa 79197



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>ref|XM_602313.2| PREDICTED: Bos taurus similar to phosphatidylinositol transfer
            protein, membrane-associated 2 (LOC523999), mRNA
          Length = 5303

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   accagcagcgtggagcagccg 118
            |||||||||||||||||||||
Sbjct: 3218 accagcagcgtggagcagccg 3198



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>emb|CR734200.2|CNS0GTAF Tetraodon nigroviridis full-length cDNA
          Length = 1325

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 94  tcccaccagcagcgtggagca 114
           |||||||||||||||||||||
Sbjct: 12  tcccaccagcagcgtggagca 32



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>gb|DQ168582.1| Calliphora vicina caupolican-like protein mRNA, partial cds
          Length = 1878

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 300 agccgctgtggcagcagcagc 320
           |||||||||||||||||||||
Sbjct: 375 agccgctgtggcagcagcagc 395



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>ref|XM_509457.1| PREDICTED: Pan troglodytes similar to phosphatidylinositol transfer
            protein, membrane-associated 2; PYK2 N-terminal
            domain-interacting receptor 3; retinal degeneration B
            alpha 2 (Drosophila) (LOC452339), mRNA
          Length = 2858

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accagcagcgtggagcagcc 117
            ||||||||||||||||||||
Sbjct: 1642 accagcagcgtggagcagcc 1623



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>ref|XM_844201.1| PREDICTED: Canis familiaris similar to phosphatidylinositol transfer
            protein, membrane-associated 2, transcript variant 2
            (LOC477454), mRNA
          Length = 3913

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   ccagcagcgtggagcagccg 118
            ||||||||||||||||||||
Sbjct: 2429 ccagcagcgtggagcagccg 2410



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>ref|XM_534652.2| PREDICTED: Canis familiaris similar to phosphatidylinositol transfer
            protein, membrane-associated 2, transcript variant 1
            (LOC477454), mRNA
          Length = 3412

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   ccagcagcgtggagcagccg 118
            ||||||||||||||||||||
Sbjct: 1928 ccagcagcgtggagcagccg 1909



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 301     gccgctgtggcagcagcagcgctg 324
               |||||||||||||| |||||||||
Sbjct: 2048184 gccgctgtggcagctgcagcgctg 2048161



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>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12,
             complete sequence
          Length = 173914

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   gatgcactatggttctgcta 445
             ||||||||||||||||||||
Sbjct: 24497 gatgcactatggttctgcta 24516



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>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence
          Length = 218647

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   attgtcagttttagggcttg 243
             ||||||||||||||||||||
Sbjct: 99752 attgtcagttttagggcttg 99733



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>gb|AC026413.5|AC026413 Homo sapiens chromosome 5 clone CTD-2030B15, complete sequence
          Length = 117928

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   acaagaagggattgtccagt 292
             ||||||||||||||||||||
Sbjct: 59283 acaagaagggattgtccagt 59302



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      gctgtggcagcagcagcgct 323
                ||||||||||||||||||||
Sbjct: 24724583 gctgtggcagcagcagcgct 24724564



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>gb|AC010285.4|AC010285 Homo sapiens chromosome 5 clone CTC-563A5, complete sequence
          Length = 124289

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   acaagaagggattgtccagt 292
             ||||||||||||||||||||
Sbjct: 85609 acaagaagggattgtccagt 85628



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>dbj|AB040890.2| Homo sapiens mRNA for KIAA1457 protein, partial cds
          Length = 6799

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accagcagcgtggagcagcc 117
            ||||||||||||||||||||
Sbjct: 2626 accagcagcgtggagcagcc 2607



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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    gctgtggcagcagcagcgct 323
              ||||||||||||||||||||
Sbjct: 114106 gctgtggcagcagcagcgct 114087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,904,655
Number of Sequences: 3902068
Number of extensions: 3904655
Number of successful extensions: 71671
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71556
Number of HSP's gapped (non-prelim): 112
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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