Clone Information

BLAST Search Result

Clone Name	bart15f12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VIP1_SCHPO (P87216) Protein vip1	44	2e-04
2	SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Ar...	44	2e-04
3	MODU_DROME (P13469) DNA-binding protein modulo	42	0.001
4	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	39	0.007
5	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	36	0.048
6	GAR2_SCHPO (P41891) Protein gar2	35	0.081
7	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	35	0.081
8	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	35	0.081
9	NOP12_YEAST (Q08208) Nucleolar protein 12	35	0.081
10	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	35	0.081
11	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	35	0.11
12	RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31	35	0.11
13	NOP12_SCHPO (O13741) Nucleolar protein 12	34	0.18
14	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	34	0.24
15	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	34	0.24
16	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	34	0.24
17	RSD1_SCHPO (O13845) RNA-binding protein rsd1	33	0.31
18	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	33	0.40
19	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	33	0.40
20	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	33	0.40
21	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	33	0.40
22	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	33	0.40
23	RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p...	33	0.53
24	RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p...	33	0.53
25	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	33	0.53
26	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	33	0.53
27	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	32	0.69
28	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	32	0.90
29	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	31	1.5
30	SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9	31	1.5
31	SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr...	31	1.5
32	SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9	31	2.0
33	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	31	2.0
34	SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-...	30	2.6
35	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	30	2.6
36	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	30	2.6
37	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	30	2.6
38	SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr...	30	2.6
39	SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr...	30	2.6
40	YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c...	30	3.4
41	TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42	30	3.4
42	CABYR_MOUSE (Q9D424) Calcium-binding tyrosine phosphorylation-re...	30	3.4
43	ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)	30	3.4
44	NOP12_GIBZE (Q4IQW0) Nucleolar protein 12	30	3.4
45	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	30	3.4
46	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	30	3.4
47	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	30	4.4
48	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	30	4.4
49	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	30	4.4
50	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	30	4.4
51	CHP1_SCHPO (Q10103) Chromo domain protein 1	30	4.4
52	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	30	4.4
53	ARI1_DROME (Q94981) Protein ariadne-1 (Ari-1)	29	7.6
54	SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1	29	7.6
55	SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1	29	7.6
56	SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr...	29	7.6
57	SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1	29	7.6
58	SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1	29	7.6
59	TBA_AJECA (P53371) Tubulin alpha chain (Fragment)	29	7.6
60	MDM4_HUMAN (O15151) Mdm4 protein (p53-binding protein Mdm4) (Mdm...	29	7.6
61	GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC ...	28	9.9
62	SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu...	28	9.9
63	SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1	28	9.9
64	SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik...	28	9.9
65	TBA1_EMENI (P24633) Tubulin alpha-1 chain	28	9.9
66	MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Ac...	28	9.9

>VIP1_SCHPO (P87216) Protein vip1|
          Length = 257

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALLLSGAT 394
           V VTN+S   TE+ I +FFSF G + ++  +   E +Q A + F+     +TALLL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 63

Query: 395 I 397
           +
Sbjct: 64  L 64

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>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDE-----WSQVAYVTFKDAQGAETALL 379
           ++VTNVS SA+ + ++  F F G I+ + +   D+      S+V +V F D   A  A  
Sbjct: 35  IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQH 94

Query: 380 LSGATIVDLSVIIAPAPEYQPPVTASA 460
           L+    VD ++I+ P  E   P  A A
Sbjct: 95  LTNTVFVDRALIVVPYAEGVIPDEAKA 121

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>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALLLSG 388
           R++ VTN++  ATE D+++ F+ SG+IE + M       Q A V FKD +G   + L + 
Sbjct: 420 RAILVTNLTSDATEADLRKVFNDSGEIESIIM-----LGQKAVVKFKDDEGFCKSFLANE 474

Query: 389 ATIVDLSVIIAP 424
           + + +  + I P
Sbjct: 475 SIVNNAPIFIEP 486

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>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 379
           R V V  +     E+ + E FS  GD+E+V +    + +     AYV FKD    E ALL
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333

Query: 380 LSGATIVDLS 409
           L+G  I +LS
Sbjct: 334 LNGKGINELS 343

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>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHVDMK------SGDEWSQVAYVTFKDAQGAETALLL 382
           V N+S SAT   I   F++ G I+ + +       + +   + A++ F D +  E A  L
Sbjct: 14  VANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEVAQHL 73

Query: 383 SGATIVDLSVIIAPAP 430
           +   ++D +++  P P
Sbjct: 74  TNTVVIDCAIVCLPYP 89

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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +2

Query: 212 SVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQV---AYVTFKDAQGAETALLL 382
           +V V N+S +ATE D+   F   GDI+ + + +  +  ++    YVTF D   A+  + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426

Query: 383 SG 388
           +G
Sbjct: 427 NG 428

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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +2

Query: 227 NVSLSATEQDIKEFFSFSGDIEHV----DMKSGDEWSQVAYVTFKDAQGAETALL 379
           N+  +ATE D ++ FS  G++E V    D ++G      AYV FK+A  A TA +
Sbjct: 336 NILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQS-KGFAYVLFKNADNAATAFV 389

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>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 379
           RSV V N+     E+ + + F   GDIE+V +    + +     AYV FKD Q    ALL
Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418

Query: 380 L 382
           L
Sbjct: 419 L 419

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>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 379
           RS+ V N+     E+ + + F   GDIE+V +    + +     AYV FKD Q    ALL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338

Query: 380 LS 385
           L+
Sbjct: 339 LN 340

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 35.4 bits (80), Expect = 0.081
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 245 TEQDIKEFFSFSGDIEHVDM--KSGDEWSQVAYVTFKDAQGAETALLLSGATIVDLSVI 415
           TE+ ++EFFS  GD+  V +  K   E  + A++ +K A  AE A+     + +D + I
Sbjct: 14  TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72

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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALL-LSGA 391
           V +  +S +  E+DI+ FFS  G +  VD+K+G       +V F+D++ A+ A+  L+G 
Sbjct: 4   VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNG-----YGFVEFEDSRDADDAVYELNGK 58

Query: 392 TIVDLSVIIAPA 427
            +    VI+  A
Sbjct: 59  ELCGERVIVEHA 70

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>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31|
          Length = 264

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           R V V N      + D++  F   G ++ VDMKSG      A+V F+D + AE A+
Sbjct: 2   RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG-----YAFVYFEDERDAEDAI 52

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>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 379
           R V V N++  A E+ +  +F   G I++V +    + +     AY+ FKD  G + ALL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329

Query: 380 LS 385
           L+
Sbjct: 330 LN 331

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>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALL-LSGA 391
           V +  +S  A E+D++ FF   G I  VD+K+G       +V F D + A+ A+  L+G 
Sbjct: 4   VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58

Query: 392 TIVDLSVIIAPA 427
            +    VI+  A
Sbjct: 59  DLCGERVIVEHA 70

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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKS--------------------GDEWSQ 328
           R+V V N+ ++  ++ +K FF   G +E V  +S                     D+ S 
Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSI 248

Query: 329 VAYVTFKDAQGAETALLLSGATIVD 403
            AYV FKD   A  AL  +GA I +
Sbjct: 249 NAYVVFKDESAAAKALQRNGAQIAE 273

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>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALL-LSGA 391
           V +  +S  A E+D++ FF   G I  VD+K+G       +V F D + A+ A+  L+G 
Sbjct: 4   VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58

Query: 392 TIVDLSVIIAPA 427
            +    VI+  A
Sbjct: 59  DLCGERVIVEHA 70

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSG---DIEHVDMKSGDEWSQVAYVTFKDAQGAETALL 379
           R+V V+ ++   T +++ +FF  +G   D + V  K       VAYV F      + A+ 
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299

Query: 380 LSGATIVDLSVII 418
           LSG  ++ L VI+
Sbjct: 300 LSGKRLLGLPVIV 312



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDE--WSQVAYVTFKDAQGAETAL 376
           V+N+  + T++D+K  F   GDIE V ++  D+       Y+ +++   A  AL
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNAL 397

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>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 379
           RS+ V NV   AT ++++  F   G +  V +   K        AY+ F D +   T+L 
Sbjct: 167 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 226

Query: 380 LSGATIVDLSVIIAPAPEYQPPVTAS 457
           L  +      + + P    +P ++ +
Sbjct: 227 LDESLFRGRQIKVIPKRTNRPGISTT 252

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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKS--------------------GDEWSQ 328
           R+V V N+ ++  ++ +K FF   G IE V  +S                     D+ + 
Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244

Query: 329 VAYVTFKDAQGAETALLLSGATIVD 403
            AYV FK+   A  AL  +GA I D
Sbjct: 245 NAYVVFKEESAATQALKRNGAQIAD 269

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>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 379
           RS+ V NV   AT ++++  F   G +  V +   K        AY+ F D +   T+L 
Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230

Query: 380 LSGATIVDLSVIIAPAPEYQPPVTAS 457
           L  +      + + P    +P ++ +
Sbjct: 231 LDESLFRGRQIKVIPKRTNRPGISTT 256

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>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 379
           RS+ V NV   AT ++++  F   G +  V +   K        AY+ F D +   T+L 
Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230

Query: 380 LSGATIVDLSVIIAPAPEYQPPVTAS 457
           L  +      + + P    +P ++ +
Sbjct: 231 LDESLFRGRQIKVIPKRTNRPGISTT 256

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V V N+     E+++++ F   G I++VD+KSG      A+V F+D + AE A+
Sbjct: 9   QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RGPAFAFVEFEDHRDAEDAV 63

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>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHV----DMKSG--DEWSQVAYVTFKDAQGAETAL 376
           VT V   ATE+DI + F+  G+I+++    D ++G    ++ V Y T+K+AQ A   L
Sbjct: 77  VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

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>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHV----DMKSG--DEWSQVAYVTFKDAQGAETAL 376
           VT V   ATE+DI + F+  G+I+++    D ++G    ++ V Y T+K+AQ A   L
Sbjct: 77  VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 227 NVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           N    A E D++  F   G +E VDMK+G      A+V  +D + AE A+
Sbjct: 8   NFEYDARESDLERLFRKYGKVERVDMKAG-----FAFVYMEDERDAEDAI 52

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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKS--------------------GDEWSQ 328
           R+V V N+ ++  ++ +K FF   G +E V  +S                     D+ S 
Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242

Query: 329 VAYVTFKDAQGAETALLLSGATIVD 403
            AYV FK+ + A  AL  +GA I +
Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAE 267

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>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 379
           +SV V NV  S T ++++  F+  G +  V +   K        AY+ F +      ALL
Sbjct: 55  QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114

Query: 380 LSGATIVDLSVIIAP 424
           L+G+ + +  + + P
Sbjct: 115 LNGSMLHERPLKVTP 129

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 227 NVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           N    A E D++  F   G +E VDMK+G      A+V  +D + AE A+
Sbjct: 8   NFEYDAREGDLERLFRKYGKVERVDMKAG-----FAFVYMEDERDAEDAI 52

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>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETA----L 376
           R V V   +   TE +++EFFS  GD+  +D+     +   A+VTF D Q A++     L
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDV--MDVFIPKPFRAFAFVTFADDQIAQSLCGEDL 248

Query: 377 LLSGATI 397
           ++ G ++
Sbjct: 249 IIKGISV 255

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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+     E+D+++ F   G I  +++K+       A+V F+D + AE A+
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69

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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+     E+D+++ F   G I  +++K+       A+V F+D + AE A+
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69

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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+     E+D+++ F   G I  +++K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 70

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>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 379
           RSV V N+     E+ + + F   G IE+V +    + +     AYV F + Q    ALL
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287

Query: 380 LS 385
           L+
Sbjct: 288 LN 289

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>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           V +  ++ +A E+D++ FF   G I  +D+K G       +V F+D + A+ A+
Sbjct: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAV 54

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>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVA----YVTFKDAQGAETALLLSG 388
           V N+S   TE+ I E FS SGDI+ + M   D+  + A    +V +     AE A+    
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYIN 102

Query: 389 ATIVDLSVI 415
            T +D  +I
Sbjct: 103 GTRLDDRII 111

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>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVA----YVTFKDAQGAETALLLSG 388
           V N+S   TE+ I E FS SGDI+ + M   D+  + A    +V +     AE A+    
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYIN 102

Query: 389 ATIVDLSVI 415
            T +D  +I
Sbjct: 103 GTRLDDRII 111

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>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVA----YVTFKDAQGAETALLLSG 388
           V N+S   TE+ I E FS SGDI+ + M   D+  + A    +V +     AE A+    
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYIN 102

Query: 389 ATIVDLSVI 415
            T +D  +I
Sbjct: 103 GTRLDDRII 111

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>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           V +  ++ +A E+D++ FF   G I  +D+K G       +V F+D + A+ A+
Sbjct: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAV 54

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>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 270

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           V +  ++ +A E+D++ FF   G I  +D+K G       +V F+D + A+ A+
Sbjct: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAV 54

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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDA 355
           R+V + N+  S  E++I+E F   G IEH+ + S    + V ++  +DA
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347

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>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +1

Query: 295 CGYEKW*RVVSSCICYL*RCPRSRDCTSSFGRYNS*SFCY--HCTCSRVSTARYCLCT 462
           C +++    + SC+C        R+CT     Y     C   HCTCS      +C C+
Sbjct: 12  CTWQRCCPQLCSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCSESPNCHWCCCS 69

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>CABYR_MOUSE (Q9D424) Calcium-binding tyrosine phosphorylation-regulated protein|
           (Calcium-binding protein 86) (Testis-specific
           calcium-binding protein CBP86)
          Length = 453

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = +2

Query: 374 LLLSGATI-------VDLSVIIAPAPEYQPPVTASAPLSGTRVP 484
           L+ SG T+           V++ P  E +PP  +SAPL G + P
Sbjct: 223 LVCSGETVEVQVVSKTSAQVVVGPVSEAEPPKASSAPLQGEQEP 266

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>ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1807

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 316 RVVSSCICYL*RCPRSRDCTSSFGRYNS*SFCYHCTCSRVSTARYCLCT 462
           R+ +S IC +  C   ++  S+   Y     C HC C+   + + C C+
Sbjct: 446 RMDASVICDMCACELQKEVQSARCHYRGDFMCGHCVCNEGWSGKTCNCS 494

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>NOP12_GIBZE (Q4IQW0) Nucleolar protein 12|
          Length = 559

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 218 KVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQV----AYVTFKDAQGAETALLLS 385
           K  N + S  E+ +   FS  G +E+V +   D  ++V    AYV F DA   E ALLL 
Sbjct: 355 KKKNKTPSDIEEGLWRTFSTQGKVENVRVVR-DSKTRVGKGFAYVQFYDANDVEAALLLD 413

Query: 386 G 388
           G
Sbjct: 414 G 414

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 209 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CHP1_SCHPO (Q10103) Chromo domain protein 1|
          Length = 960

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +2

Query: 212 SVKVTNVSLSATEQDIKEFFSF-SGDIEHVDMKS--GDEWSQVAYVTFKDAQGAETA 373
           ++ V++ S S T+QDI  +F+F  G+IE   +KS   D+   +AY+ F   + A+ A
Sbjct: 312 TILVSDNSGSLTKQDILSYFAFIKGNIEVFFLKSPKKDKVCNMAYIQFDSIEQAKLA 368

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>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +2

Query: 221 VTNVSLSATEQDIKEFFSFSGDIEHVDM------KSGDEWSQVAYVTFKDAQGAETALLL 382
           V N+S   TE+ I E FS SGD++ + M      K+   +  V Y T  D   A TA+  
Sbjct: 36  VGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRAD---AGTAMRF 92

Query: 383 SGATIVDLSVI 415
              T +D  ++
Sbjct: 93  INGTRLDDRIV 103

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>ARI1_DROME (Q94981) Protein ariadne-1 (Ari-1)|
          Length = 503

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 487 NWHSGSTQRCRGSNGRLILW-SRCNDNRKI-NYCSARKKKCSLCSLGIFKGNICN 329
           NWH     +CR     L  W  +C+D+ +  N+ +A  K+C  CS+ I K   CN
Sbjct: 257 NWHD--PVKCRW----LKKWIKKCDDDSETSNWIAANTKECPRCSVTIEKDGGCN 305

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>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing|
           factor SF2, P33 subunit) (Alternative splicing factor
           ASF-1)
          Length = 247

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1|
          Length = 267

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 71

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>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1|
          Length = 256

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>TBA_AJECA (P53371) Tubulin alpha chain (Fragment)|
          Length = 418

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
 Frame = -2

Query: 444 GG*YSGAGAMITERSTI-------------VAPERRSAVSAPWASLKVTYAT*DHSSPLF 304
           GG  SG GA++ ER ++              AP+  ++V  P+ S+  T+ T +HS   F
Sbjct: 143 GGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQF 202

Query: 303 I 301
           +
Sbjct: 203 M 203

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>MDM4_HUMAN (O15151) Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like|
           p53-binding protein) (Mdmx protein) (Double minute 4
           protein)
          Length = 490

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 481 HSGSTQRCRGSNGRLI--LWSRCNDNRKINYCSARKKKCSLCSLGIFKGNICNLRP--LV 314
           HS  +Q    S G  +  L  +  D   +  C    K CSLC      GNI + R   LV
Sbjct: 399 HSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLV 458

Query: 313 TTFH 302
           T FH
Sbjct: 459 TCFH 462

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>GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)|
           (Fd-GOGAT)
          Length = 1538

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 338 HMQLETTRHHFSYPHVQCLLKKKRIP*CLAQ 246
           ++  ET RH +S P  + L+ K R+P C  Q
Sbjct: 701 YLAFETARHWWSNPKTKMLMSKGRLPACNIQ 731

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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 373 TSSFGRYNS*SFCYHCT-CSRVSTARYCLC 459
           T  +G Y   S C +CT C+R +   +C C
Sbjct: 768 TQEYGNYQQGSLCGYCTFCNRCTECEHCHC 797

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>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1|
          Length = 245

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +D+++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1|
          Length = 245

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 376
           + V N+      +D+++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>TBA1_EMENI (P24633) Tubulin alpha-1 chain|
          Length = 449

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
 Frame = -2

Query: 444 GG*YSGAGAMITERSTI-------------VAPERRSAVSAPWASLKVTYAT*DHSSPLF 304
           GG  SG GA++ ER ++              AP+  ++V  P+ S+  T+ T +HS   F
Sbjct: 143 GGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSF 202

Query: 303 I 301
           +
Sbjct: 203 M 203

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>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking|
            family 7)
          Length = 5327

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 245  TEQDIKEFFSFSGDIEHVDMKSG---DEWSQVAYVTFKDAQGAETALLLSGATIVDLSVI 415
            T + +KE    +GD + +D   G   D+W  V   + +     E ALL SG  +  L  +
Sbjct: 4543 TGRALKEKTLLAGDTQKLDNLLGEVRDKWDTVCGKSVERQHKLEEALLFSGQFMDALQAL 4602

Query: 416  IAPAPEYQPPVTASAPLSG 472
            +    + +P +    P+ G
Sbjct: 4603 VDWLYKVEPQLAEDQPVHG 4621


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,714,758
Number of Sequences: 219361
Number of extensions: 829038
Number of successful extensions: 3182
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 3050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result