ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart15e09 |
|---|---|
| Clone Library Name | barley_pub |
>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 535 Score = 92.0 bits (227), Expect = 8e-19 Identities = 44/95 (46%), Positives = 61/95 (64%) Frame = +1 Query: 214 IRNPKFFTPTTVRPLCIVTPTNASHVQAAVLCGRRHDVRLRVRSGGHDYEGLSYRSERPE 393 ++NP F PT +P IV P + + + V C R +R+RSGGH YEGLSY ++ P Sbjct: 62 MQNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLSYTADTP- 120 Query: 394 VFAVVDLANLRAVRVDRAAGTAWVDSGATVGELYY 498 F +VD+ NL + +D + TAWV+SGAT+GELYY Sbjct: 121 -FVIVDMMNLNRISIDVLSETAWVESGATLGELYY 154
>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 538 Score = 87.4 bits (215), Expect = 2e-17 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 3/142 (2%) Frame = +1 Query: 82 LGCYVSVPSLAASG-DFLQCLS-SSIPSERVXXXXXXXXXXXXXX-XIRNPKFFTPTTVR 252 L ++S+ + A G D L CL+ + + + V I+NP F + Sbjct: 11 LSIFLSLLNCALGGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISK 70 Query: 253 PLCIVTPTNASHVQAAVLCGRRHDVRLRVRSGGHDYEGLSYRSERPEVFAVVDLANLRAV 432 P I+ P + + + C R+ +R+RSGGH YEGLSY S+ P F ++DL NL V Sbjct: 71 PSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTP--FILIDLMNLNRV 128 Query: 433 RVDRAAGTAWVDSGATVGELYY 498 +D + TAWV+SG+T+GELYY Sbjct: 129 SIDLESETAWVESGSTLGELYY 150
>YEK3_SCHPO (O36015) Putative ribosomal RNA methyltransferase C4F10.03c (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) Length = 285 Score = 34.7 bits (78), Expect = 0.14 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 223 PKFFTPTTVRPLCIVTPTNASHVQAAVLCG 312 P F P +PLC++ PTNA + + CG Sbjct: 210 PSNFQPDLTKPLCVIDPTNAHEIAPFIACG 239
>ALL5_APIGR (P81943) Allergen Api g 5 (Fragments)| Length = 86 Score = 33.9 bits (76), Expect = 0.25 Identities = 16/27 (59%), Positives = 20/27 (74%) Frame = +1 Query: 418 NLRAVRVDRAAGTAWVDSGATVGELYY 498 NL+AV D A TA V +GAT+GE+YY Sbjct: 24 NLKAVIADPVAKTAVVQAGATLGEVYY 50
>HDNO_ARTOX (P08159) 6-hydroxy-D-nicotine oxidase (EC 1.5.3.6) (6-HDNO)| Length = 458 Score = 32.7 bits (73), Expect = 0.55 Identities = 22/81 (27%), Positives = 37/81 (45%) Frame = +1 Query: 250 RPLCIVTPTNASHVQAAVLCGRRHDVRLRVRSGGHDYEGLSYRSERPEVFAVVDLANLRA 429 RP I +A V +V + + + VRSGGH+ G + + V+DL + + Sbjct: 37 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN----DGGIVLDLRLMNS 92 Query: 430 VRVDRAAGTAWVDSGATVGEL 492 + +D A A + G G+L Sbjct: 93 IHIDTAGSRARIGGGVISGDL 113
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 31.2 bits (69), Expect = 1.6 Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 23/71 (32%) Frame = -1 Query: 273 GRHDAERPHSRRGEEL--------------------GVPDGRHQDGSERRRTRRQYALA- 157 G H R H R GEE G +G DG ERRR R A A Sbjct: 954 GEHRRHRAHRRPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGERRRRHRHGAPAT 1013 Query: 156 --GDARREALE 130 GDARRE E Sbjct: 1014 YEGDARREDKE 1024
>RS3_RALSO (Q8XV18) 30S ribosomal protein S3| Length = 264 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = -1 Query: 273 GRHDA---ERPHSRRGEELGVPDGRHQDGSERRRTRRQYALAGDARREALEEVAG 118 GR+DA E P R + G P+GR ++G R +R+ A AG R + G Sbjct: 209 GRNDAPVVEEPQEERRKRPGRPEGRRREGEGRPGGQRRGAGAGGRRSGGADAKTG 263
>TAP1_MOUSE (P21958) Antigen peptide transporter 1 (APT1) (Peptide transporter| TAP1) (ATP-binding cassette sub-family B member 2) (Histocompatibility antigen modifier 1) Length = 724 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 355 DYEGLSYRSERPEVFAVVDLANLRAVRVDRAAGTAWVDSG 474 D GL Y + RP+ FA+ +A L A + G+ W SG Sbjct: 102 DSAGLLYWNSRPDAFAISYVAALPAAALWHKLGSLWAPSG 141
>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B| subunit (Voltage-gated calcium channel alpha subunit Cav2.2) (DOE-4) Length = 2326 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = -1 Query: 285 GRVGGRHDAERPHSRRGEELG--VPDGRHQDGSERRRTRRQYALAGDARREALE 130 G G RH + SR G G V H +G+ERRR RQ + + E E Sbjct: 946 GTKGERHSRAKDGSRSGGREGEAVSRSHHAEGAERRRKHRQKVASTNESEEKRE 999
>MPAG4_DACGL (P82946) Major pollen allergen Dac g 4 (Fragments)| Length = 55 Score = 30.0 bits (66), Expect = 3.6 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = +1 Query: 448 AGTAWVDSGATVGELYY 498 A TAWVDSGA +GEL Y Sbjct: 24 ARTAWVDSGAQLGELSY 40
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.0 bits (66), Expect = 3.6 Identities = 25/82 (30%), Positives = 34/82 (41%) Frame = -1 Query: 285 GRVGGRHDAERPHSRRGEELGVPDGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQG 106 GR GG+ D +R DG+ +DG R +RQ A AG R + GGS+ Sbjct: 243 GRPGGQRDGQR------------DGQ-RDGQGNRGGQRQGAGAGGPRPQGGPRPQGGSRP 289 Query: 105 GDGHVATEEASCEQECHACGNR 40 G + + QE G R Sbjct: 290 QGGSAQGAQGAPSQERQGGGRR 311
>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)| [Contains: Capsid protein VP24 (EC 3.4.21.97) (Assemblin) (Protease); Capsid protein VP22A; UL26.5 protein; C-terminal peptide] Length = 635 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Frame = +3 Query: 159 RARIDAEFA----VVHFRPGVVHPEPQVLHPDDC 248 RAR A + V H+RP V PEP HP C Sbjct: 496 RARTSAPYGMYTPVAHYRPQVGEPEPTTTHPALC 529
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -1 Query: 237 GEELGVPDGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEAS 73 GE LG G +GSER R Q + +E G + DG + EE S Sbjct: 779 GEVLGPRSGSSSEGSERSTDRSQEGAPSTLLADDQKESRGRASMADGDLEPEEGS 833
>VP6_BTV1S (Q03328) VP6 protein (Minor inner core protein VP6)| Length = 328 Score = 29.3 bits (64), Expect = 6.1 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = -1 Query: 285 GRVGGRHDAERPHSRRGEELGVPDGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQG 106 G AER + EEL +GR++ + R+R ++ A RR +G S Sbjct: 35 GETNKESKAERKEGDKAEELKDGEGRNRRAARRKRAAKETKDARCDRRIHTAVGSGSSAK 94 Query: 105 GDGHVATE 82 G G A E Sbjct: 95 GPGERANE 102
>TB182_MOUSE (P58871) 182 kDa tankyrase 1-binding protein (Fragment)| Length = 909 Score = 29.3 bits (64), Expect = 6.1 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Frame = -1 Query: 300 GGLDVGRVGGRHDAERPHSRRGEELGVPDGRHQDG-SERRRTRRQYALAGDARREA---L 133 G L+ G GG PHSR G +G QDG S + TR Q + +++ L Sbjct: 199 GHLEEGASGGLLSPSTPHSRDGAARPKDEGSWQDGDSSQEITRLQGRMQAESQSPTNVDL 258 Query: 132 EEVAGGSQGGDGHVATEEASCEQECHACGNRHFCR 28 E+ +G G + A+ + + G + + R Sbjct: 259 EDKEREQRGWAGEFSLGVAAQSEAAFSPGRQDWSR 293
>ABA1_ASCSU (Q06811) ABA-1 polyprotein precursor (Body fluid allergen 1)| (Allergen Asc s 1) (Nematode polyprotein allergen ABA-1) (NPA ABA-1) [Contains: ABA-1B1 repeat unit; ABA-1A4 repeat unit; ABA-1A3 repeat unit; ABA-1A2 repeat unit; ABA-1A1 repeat uni Length = 1365 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 216 DGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEASCE 67 DG+ + E + L GDA++EA E + GG + HV EE + E Sbjct: 1228 DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAE 1277 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 216 DGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEASCE 67 DG+ + E + L GDA++EA E + GG + HV EE + E Sbjct: 1095 DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAE 1144 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 216 DGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEASCE 67 DG+ + E + L GDA++EA E + GG + HV EE + E Sbjct: 962 DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAE 1011 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 216 DGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEASCE 67 DG+ + E + L GDA++EA E + GG + HV EE + E Sbjct: 829 DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAE 878 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 216 DGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEASCE 67 DG+ + E + L GDA++EA E + GG + HV EE + E Sbjct: 696 DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAE 745 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 216 DGRHQDGSERRRTRRQYALAGDARREALEEVAGGSQGGDGHVATEEASCE 67 DG+ + E + L GDA++EA E + GG + HV EE + E Sbjct: 563 DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAE 612
>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) Length = 1511 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 13/89 (14%) Frame = -1 Query: 300 GGLDVGRVGGRHDAE----RPHSRRGEELGVPDGRHQD---------GSERRRTRRQYAL 160 GG G + AE RP R G RH++ GSE + R ++ Sbjct: 178 GGSPASSSGTQRRAEGSERRPRRDRRSSSGRSKERHREHRRRDGTRSGSEASKARSRHGH 237 Query: 159 AGDARREALEEVAGGSQGGDGHVATEEAS 73 +G+ R EA + + S GG A+ +S Sbjct: 238 SGEERAEAAKSGSSSSSGGRRKSASATSS 266
>Y101_MYCPN (P75568) Hypothetical protein MPN101 (C09_orf428V)| Length = 428 Score = 28.9 bits (63), Expect = 7.9 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Frame = -1 Query: 264 DAERPHSRRGEELGVPDGRHQDGSERRRTRRQYA-LAGDARREALEEVA---GGSQGGDG 97 +AE ++ E+L + + +GS T Q +GD + +AL+ GSQG G Sbjct: 153 NAEADTAKSNEKLQGDESKSSNGSSSTSTTTQRGGSSGDTKVKALQVAVKKKSGSQGNSG 212 Query: 96 HVATEEASCE 67 TE+ E Sbjct: 213 EQGTEQVELE 222
>SPTN5_HUMAN (Q9NRC6) Spectrin beta chain, brain 4 (Spectrin, non-erythroid beta| chain 4) (Beta-V spectrin) (BSPECV) Length = 3674 Score = 28.9 bits (63), Expect = 7.9 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -1 Query: 273 GRHDAERPHSRRGEELGVPDGRHQDGSERRRTRRQYALAGDARREALEEV 124 G H A R EELG G QD S+++ + Q A R ++EE+ Sbjct: 2750 GGHPASEAIQERLEELGALWGELQDNSQKKVAKLQKACEALRLRRSMEEL 2799 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,366,863 Number of Sequences: 219361 Number of extensions: 1012445 Number of successful extensions: 4408 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4400 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
