ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart15c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1484 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 289 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 345 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 346 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 405 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 406 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 465 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 466 ctgaaatca 474 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 219 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 278 Query: 315 ctcggg 320 |||||| Sbjct: 279 ctcggg 284 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 141 ctgtggcccgagaagaagaagcccagg 167
>ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA Length = 1585 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 382 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 438 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 439 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 498 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 499 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 558 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 559 ctgaaatca 567 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 312 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 371 Query: 315 ctcggg 320 |||||| Sbjct: 372 ctcggg 377 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 234 ctgtggcccgagaagaagaagcccagg 260
>ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA Length = 1687 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 384 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 440 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 441 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 500 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 501 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 560 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 561 ctgaaatca 569 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 314 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 373 Query: 315 ctcggg 320 |||||| Sbjct: 374 ctcggg 379 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 236 ctgtggcccgagaagaagaagcccagg 262
>ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA Length = 1602 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 286 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 342 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 343 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 402 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 403 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 462 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 463 ctgaaatca 471 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 216 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 275 Query: 315 ctcggg 320 |||||| Sbjct: 276 ctcggg 281 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 138 ctgtggcccgagaagaagaagcccagg 164
>dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H02, full insert sequence Length = 1484 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 289 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 345 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 346 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 405 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 406 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 465 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 466 ctgaaatca 474 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 219 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 278 Query: 315 ctcggg 320 |||||| Sbjct: 279 ctcggg 284 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||| ||||||||||| Sbjct: 141 ctgtggcccgagaaggagaagcccagg 167
>dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F11, full insert sequence Length = 1587 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 383 aggacgacgatgacgtcgtcgagatcaagcc---ggccgccttcaagagggccctctcca 439 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 440 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 499 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 500 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 559 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 560 ctgaaatca 568 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 313 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 372 Query: 315 ctcggg 320 |||||| Sbjct: 373 ctcggg 378 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 235 ctgtggcccgagaagaagaagcccagg 261
>dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145H23, full insert sequence Length = 1689 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 385 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 441 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 442 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 501 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 502 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 561 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 562 ctgaaatca 570 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 315 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 374 Query: 315 ctcggg 320 |||||| Sbjct: 375 ctcggg 380 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 237 ctgtggcccgagaagaagaagcccagg 263
>dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B02, full insert sequence Length = 1603 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 287 aggacgacgatgacgtcgtcgagatcaagcc---ggccgccttcaagagggccctctcca 343 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 344 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgcca 403 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 404 aaagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctg 463 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 464 ctgaaatca 472 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 217 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 276 Query: 315 ctcggg 320 |||||| Sbjct: 277 ctcggg 282 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 139 ctgtggcccgagaagaagaagcccagg 165
>gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, complete cds Length = 1612 Score = 141 bits (71), Expect = 3e-30 Identities = 160/189 (84%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 317 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 373 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || Sbjct: 374 gagataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgccc 433 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| Sbjct: 434 aaagaaagagaaagaaccaattcaggggcatccgccaccgcccttggggtaagtgggctg 493 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 494 ctgaaatca 502 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 247 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 306 Query: 315 ctcggg 320 |||||| Sbjct: 307 ctcggg 312 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 169 ctgtggcccgagaagaagaagcccagg 195
>gb|U95216.1|OSU95216 Oryza sativa ethylene responsive element binding protein (Os-EREBP1) mRNA, complete cds Length = 427 Score = 125 bits (63), Expect = 2e-25 Identities = 158/189 (83%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctccc 399 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 58 aggacgacgatgacgtcgtcgagatcaagccg---gccgccttcaagagggccctctcca 114 Query: 400 aagatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaa 459 |||| |||| | | |||||| ||||| || | |||||||||||| || ||| || | Sbjct: 115 gagataacttgatctccattaccactgccggatttgatggtcctgctgcaaagtctgcca 174 Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 |||| |||||||||||||| |||||||| ||||| || ||||| |||||||||||||||| Sbjct: 175 aaagaaagagaaagaaccatttcaggggcatccgccaccgcccttggggtaagtgggctg 234 Query: 520 ctgaaatca 528 ||||||||| Sbjct: 235 ctgaaatca 243 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 268 ccgacttcgaggagttcgaggccgactccggggactccgacctggagctcggg 320 ||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 1 ccgacttcgaggagttcgaggtggactccggggactcggatttggagctcggg 53
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 119 bits (60), Expect = 1e-23 Identities = 111/128 (86%) Strand = Plus / Minus Query: 401 agatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaaa 460 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || || Sbjct: 33219636 agataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgccaa 33219577 Query: 461 aaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctgc 520 ||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct: 33219576 aagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctgc 33219517 Query: 521 tgaaatca 528 |||||||| Sbjct: 33219516 tgaaatca 33219509 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 33220862 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 33220803 Query: 315 ctcggg 320 |||||| Sbjct: 33220802 ctcggg 33220797 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 33220940 ctgtggcccgagaagaagaagcccagg 33220914 Score = 50.1 bits (25), Expect = 0.007 Identities = 51/59 (86%), Gaps = 3/59 (5%) Strand = Plus / Minus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctcc 398 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 33220792 aggacgacgatgacgtcgtcgagatcaagcc---ggccgccttcaagagggccctctcc 33220737
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_D08 Length = 163702 Score = 119 bits (60), Expect = 1e-23 Identities = 111/128 (86%) Strand = Plus / Minus Query: 401 agatgacttcagcatcattactactgctggttgtgatggtcctgcacaaaggtcagcaaa 460 |||| |||| |||| |||||| ||||| || | |||||||||||| || ||| || || Sbjct: 48945 agataacttgagcaccattaccactgccggatttgatggtcctgctgcaaagtctgccaa 48886 Query: 461 aaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctgc 520 ||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct: 48885 aagaaagagaaagaaccaattcaggggcatccgccagcgcccttggggtaagtgggctgc 48826 Query: 521 tgaaatca 528 |||||||| Sbjct: 48825 tgaaatca 48818 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccgactccggggactccgacctggag 314 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 50171 gaggacttcgaggccgacttcgaggagttcgaggtggactccggggactcggatttggag 50112 Query: 315 ctcggg 320 |||||| Sbjct: 50111 ctcggg 50106 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 183 ctgtggcccgagaagaagaagcccagg 209 ||||||||||||||||||||||||||| Sbjct: 50249 ctgtggcccgagaagaagaagcccagg 50223 Score = 50.1 bits (25), Expect = 0.007 Identities = 51/59 (86%), Gaps = 3/59 (5%) Strand = Plus / Minus Query: 340 aggacgacgacgaggtcgtcgagatcaagccctacgccgccgtcaagaggcccctctcc 398 |||||||||| || ||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 50101 aggacgacgatgacgtcgtcgagatcaagcc---ggccgccttcaagagggccctctcc 50046
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 4743335 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 4743394 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 4743395 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 4743438 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 4742414 gaggatgatttcgaggccgacttcgaggagttcgagg 4742450
>dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0648E08 Length = 135175 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 18739 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 18798 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 18799 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 18842 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 17818 gaggatgatttcgaggccgacttcgaggagttcgagg 17854
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 105934 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 105993 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 105994 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 106037 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 105013 gaggatgatttcgaggccgacttcgaggagttcgagg 105049
>dbj|AK100167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022F20, full insert sequence Length = 2445 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 409 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 468 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 469 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 512 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 269 gaggatgatttcgaggccgacttcgaggagttcgagg 305
>dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031B06, full insert sequence Length = 1677 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 369 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 428 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 429 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 472 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 229 gaggatgatttcgaggccgacttcgaggagttcgagg 265
>gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds Length = 1597 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 382 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 441 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 442 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 485 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 242 gaggatgatttcgaggccgacttcgaggagttcgagg 278
>dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E01, full insert sequence Length = 1591 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 425 tgctggttgtgatggtcctgcacaaaggtcagcaaaaaggaagagaaagaaccaattcag 484 ||||||| |||||| |||||| |||||| || |||||||||||||||||||||||||| Sbjct: 408 tgctggtgctgatgggcctgcagcaaggtctgctaaaaggaagagaaagaaccaattcag 467 Query: 485 gggtatccgtcagcgcccctggggtaagtgggctgctgaaatca 528 ||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 468 gggtatccgccagcggccatggggcaaatgggctgcggaaatca 511 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 ||||| || |||||||||||||||||||||||||||| Sbjct: 268 gaggatgatttcgaggccgacttcgaggagttcgagg 304
>emb|AJ515477.2|TAE515477 Triticum aestivum erebp gene for ethylene response element binding protein Length = 1451 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 |||||||||||||||||||| |||||||| ||||| | ||||| |||||||| |||||| Sbjct: 346 aaaaggaagagaaagaaccagttcaggggcatccgccgccgcccttggggtaaatgggct 405 Query: 519 gctgaaat 526 |||||||| Sbjct: 406 gctgaaat 413 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 249 ggcgaggaggacttcgaggccgacttcgaggagttcg 285 ||||| ||||||||||||||||||||||||| ||||| Sbjct: 193 ggcgacgaggacttcgaggccgacttcgaggggttcg 229
>gb|AY271985.1| Triticum aestivum ethylene-responsive element binding protein (TaERF2) mRNA, complete cds Length = 1068 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 |||||||||||||||||||| |||||||| ||||| | ||||| |||||||| |||||| Sbjct: 316 aaaaggaagagaaagaaccagttcaggggcatccgccgccgcccttggggtaaatgggct 375 Query: 519 gctgaaat 526 |||||||| Sbjct: 376 gctgaaat 383 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 ttcgaggccgacttcgaggagttcg 285 ||||||||||||||||||| ||||| Sbjct: 169 ttcgaggccgacttcgaggggttcg 193
>gb|AF542184.1| Triticum aestivum EREBP transcription factor mRNA, complete cds Length = 1475 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 460 aaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggctg 519 ||||||||||||||||||| |||||||| ||||| | ||||| |||||||| ||||||| Sbjct: 438 aaaggaagagaaagaaccagttcaggggcatccgccgccgcccttggggtaaatgggctg 497 Query: 520 ctgaaat 526 ||||||| Sbjct: 498 ctgaaat 504 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 ttcgaggccgacttcgaggagttcg 285 ||||||||||||||||||| ||||| Sbjct: 290 ttcgaggccgacttcgaggggttcg 314
>gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence Length = 1835 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 ||||||||||| |||||||| |||||||||||||| | |||||| ||||| || |||||| Sbjct: 494 aaaaggaagaggaagaaccagttcaggggtatccgccggcgcccgtggggcaaatgggct 553 Query: 519 gctgaaatca 528 ||||| |||| Sbjct: 554 gctgagatca 563 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 |||||||| |||||||||||||||||||||||||||| Sbjct: 326 gaggaggatttcgaggccgacttcgaggagttcgagg 362
>gb|AY103951.1| Zea mays PCO106933 mRNA sequence Length = 2052 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 ||||||||||| |||||||| |||||||||||||| | |||||| ||||| || |||||| Sbjct: 494 aaaaggaagaggaagaaccagttcaggggtatccgccggcgcccgtggggcaaatgggct 553 Query: 519 gctgaaatca 528 ||||| |||| Sbjct: 554 gctgagatca 563 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttcgaggagttcgagg 288 |||||||| |||||||||||||||||||||||||||| Sbjct: 326 gaggaggatttcgaggccgacttcgaggagttcgagg 362
>gb|AF459404.1| Narcissus pseudonarcissus DAFSAG9 AP-2 domain containing protein mRNA, partial cds Length = 458 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 ||||||||||| |||||||||| ||| |||||||||||||| || |||||||| ||||| Sbjct: 292 aaaaggaagaggaagaaccaatacagaggtatccgtcagcgtccatggggtaaatgggca 351 Query: 519 gctga 523 ||||| Sbjct: 352 gctga 356
>gb|AY271984.1| Triticum aestivum ethylene-responsive element binding protein (TaERF1) mRNA, complete cds Length = 999 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 |||||||||||||||||||| |||||||| |||| | ||||| |||||||| |||||| Sbjct: 247 aaaaggaagagaaagaaccagttcaggggcgtccgccgccgcccttggggtaaatgggct 306 Query: 519 gctgaaat 526 |||||||| Sbjct: 307 gctgaaat 314 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 ttcgaggccgacttcgaggagttcg 285 ||||||||||||||||||| ||||| Sbjct: 100 ttcgaggccgacttcgaggggttcg 124
>gb|AY781352.1| Triticum aestivum ethylene-responsive element binding protein 1 (EREB1) mRNA, complete cds Length = 1403 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgggct 518 |||||||||||||||| ||| |||||||| ||||| | ||||| |||||||| |||||| Sbjct: 348 aaaaggaagagaaagagccagttcaggggcatccgccgccgcccttggggtaaatgggct 407 Query: 519 gctgaaat 526 |||||||| Sbjct: 408 gctgaaat 415 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 ttcgaggccgacttcgaggagttcg 285 ||||||||||||||||||| ||||| Sbjct: 201 ttcgaggccgacttcgaggggttcg 225
>ref|NM_196288.1| Oryza sativa (japonica cultivar-group) putative protein containing AP2 DNA binding domain (OSJNBb0061I18.6), mRNA Length = 927 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccg 291 |||||||||||||||| ||||||||||||||| |||| Sbjct: 94 gaggacttcgaggccgccttcgaggagttcgacgccg 130
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccg 291 |||||||||||||||| ||||||||||||||| |||| Sbjct: 28561 gaggacttcgaggccgccttcgaggagttcgacgccg 28525
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccg 291 |||||||||||||||| ||||||||||||||| |||| Sbjct: 12475614 gaggacttcgaggccgccttcgaggagttcgacgccg 12475650
>dbj|AK110269.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-C07, full insert sequence Length = 1260 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccg 291 |||||||||||||||| ||||||||||||||| |||| Sbjct: 161 gaggacttcgaggccgccttcgaggagttcgacgccg 197
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttcgaggagttcgaggccg 291 |||||||||||||||| ||||||||||||||| |||| Sbjct: 12482954 gaggacttcgaggccgccttcgaggagttcgacgccg 12482990
>gb|AF071893.1|AF071893 Prunus armeniaca AP2 domain containing protein (AP2DCP) mRNA, partial cds Length = 1005 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 456 gcaaaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgg 515 ||||| || ||||| |||||||| | |||||| || || |||||||| |||||||||||| Sbjct: 10 gcaaagagaaagaggaagaaccagtacaggggaattcgccagcgcccatggggtaagtgg 69 Query: 516 gctgc 520 ||||| Sbjct: 70 gctgc 74
>emb|AJ420195.1|FSY420195 Fagus sylvatica partial mRNA for ethylene responsive element binding protein (erebp1 gene) Length = 1653 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 484 ggggtatccgtcagcgcccctggggtaagtgggctgctga 523 |||| ||||| |||||||| |||||||||||||||||||| Sbjct: 468 gggggatccggcagcgcccatggggtaagtgggctgctga 507
>emb|AJ606475.1| Fagus sylvatica mRNA for ethylene transcription factor (erf1 gene) Length = 1605 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 484 ggggtatccgtcagcgcccctggggtaagtgggctgctga 523 |||| ||||| |||||||| |||||||||||||||||||| Sbjct: 426 gggggatccggcagcgcccatggggtaagtgggctgctga 465
>emb|AJ007744.1|TSE007744 Thauera selenatis serA, serB, serD and serC genes Length = 8213 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 239 gctggtcgacggcgaggaggacttcg 264 |||||||||||||||||||||||||| Sbjct: 603 gctggtcgacggcgaggaggacttcg 628
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 341 ggacgacgacgaggtcgtcgagat 364 |||||||||||||||||||||||| Sbjct: 248799 ggacgacgacgaggtcgtcgagat 248822
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA sequence Length = 1612 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 |||||||||||||||||||||||| Sbjct: 306 gaggaggacttcgaggccgacttc 329
>gb|AY973613.1| Manihot esculenta ethylene response factor mRNA, complete cds Length = 1460 Score = 48.1 bits (24), Expect = 0.029 Identities = 57/68 (83%) Strand = Plus / Plus Query: 456 gcaaaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaagtgg 515 ||||| || |||||||| ||||| | ||| || ||||| |||||||| ||||| || ||| Sbjct: 339 gcaaagagaaagagaaaaaaccagtacagaggaatccggcagcgcccatggggaaaatgg 398 Query: 516 gctgctga 523 |||||||| Sbjct: 399 gctgctga 406
>gb|AY105702.1| Zea mays PCO125609 mRNA sequence Length = 1889 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 |||||||||||||||||||||||| Sbjct: 368 gaggaggacttcgaggccgacttc 391
>gb|AY572463.1| Gossypium barbadense ethylene response factor 1 mRNA, complete cds Length = 1403 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 atccgtcagcgcccctggggtaagtgggctgctga 523 ||||| |||||||| |||||||| ||||||||||| Sbjct: 293 atccggcagcgcccatggggtaaatgggctgctga 327
>gb|AY780431.1| Populus alba x Populus tremula apetala2/ethylene responsive factor (ERF1) mRNA, complete cds Length = 1409 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 453 tcagcaaaaaggaagagaaagaaccaattcaggggtatccgtcagcgcccctggggtaag 512 |||||||| ||||||||||||||||| || || || || | ||||| || ||||| || Sbjct: 353 tcagcaaagaggaagagaaagaaccagtttagaggaattaggcagcgtccatggggaaaa 412 Query: 513 tgggctgctga 523 ||||||||||| Sbjct: 413 tgggctgctga 423
>gb|AC097528.2| Homo sapiens BAC clone RP11-662G20 from 4, complete sequence Length = 170412 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 453 tcagcaaaaaggaagagaaagaa 475 ||||||||||||||||||||||| Sbjct: 161650 tcagcaaaaaggaagagaaagaa 161672
>gb|AY781117.2| Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds Length = 1597 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 489 atccgtcagcgcccctggggtaagtgggctgctga 523 ||||| |||||||| |||||||| ||||||||||| Sbjct: 513 atccggcagcgcccatggggtaaatgggctgctga 547
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0006N14, complete sequence Length = 155730 Score = 44.1 bits (22), Expect = 0.46 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 314 gctcgggcgcggccgggcggct-gagaaggacgacgac 350 |||||||||||||||||| ||| ||| ||||||||||| Sbjct: 104578 gctcgggcgcggccgggcagctcgaggaggacgacgac 104541
>gb|DQ460050.1| Nicotiana tabacum cDNA-AFLP fragment HN_BC1M11-154 sequence Length = 98 Score = 44.1 bits (22), Expect = 0.46 Identities = 34/38 (89%) Strand = Plus / Plus Query: 489 atccgtcagcgcccctggggtaagtgggctgctgaaat 526 ||||| ||||| || |||||||| |||||||||||||| Sbjct: 5 atccgacagcgtccatggggtaaatgggctgctgaaat 42
>gb|AC106739.5| Homo sapiens chromosome 16 clone CTD-3203P2, complete sequence Length = 150762 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 454 cagcaaaaaggaagagaaagaa 475 |||||||||||||||||||||| Sbjct: 74869 cagcaaaaaggaagagaaagaa 74890
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.46 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 314 gctcgggcgcggccgggcggct-gagaaggacgacgac 350 |||||||||||||||||| ||| ||| ||||||||||| Sbjct: 15248945 gctcgggcgcggccgggcagctcgaggaggacgacgac 15248908
>gb|AC109449.4| Homo sapiens chromosome 16 clone RP11-147I4, complete sequence Length = 139979 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 454 cagcaaaaaggaagagaaagaa 475 |||||||||||||||||||||| Sbjct: 137680 cagcaaaaaggaagagaaagaa 137659
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 acaaggacctcaaggtccccgc 154 |||||||||||||||||||||| Sbjct: 403677 acaaggacctcaaggtccccgc 403698
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.46 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 314 gctcgggcgcggccgggcggct-gagaaggacgacgac 350 |||||||||||||||||| ||| ||| ||||||||||| Sbjct: 15330444 gctcgggcgcggccgggcagctcgaggaggacgacgac 15330407
>ref|XM_470558.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1005 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 166 gacttcgaggccgccttcgagcagttcga 194
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 ggtcctgcacaaaggtcagca 458 ||||||||||||||||||||| Sbjct: 1892121 ggtcctgcacaaaggtcagca 1892141
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 4331944 gacttcgaggccgccttcgagcagttcga 4331916
>ref|NM_001009837.3| Felis catus receptor tyrosine kinase c-kit (KIT), mRNA Length = 4222 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 aggccgacttcgaggagttcg 285 ||||||||||||||||||||| Sbjct: 4141 aggccgacttcgaggagttcg 4121
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 227 ccggcgcctcgggctggtcgacggc 251 ||||| ||||||||||||||||||| Sbjct: 329667 ccggcccctcgggctggtcgacggc 329643
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 227 ccggcgcctcgggctggtcgacggc 251 ||||| ||||||||||||||||||| Sbjct: 274930 ccggcccctcgggctggtcgacggc 274906
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 227 ccggcgcctcgggctggtcgacggc 251 ||||| ||||||||||||||||||| Sbjct: 91773 ccggcccctcgggctggtcgacggc 91797
>emb|BX548005.11| Zebrafish DNA sequence from clone DKEY-105A17 in linkage group 6, complete sequence Length = 218236 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 cgactccggggactccgacct 310 ||||||||||||||||||||| Sbjct: 70826 cgactccggggactccgacct 70806
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gaggacttcgaggccgacttc 275 ||||||||||||||||||||| Sbjct: 3790764 gaggacttcgaggccgacttc 3790784
>ref|XM_684594.1| PREDICTED: Danio rerio similar to solute carrier family 16, member 7 (LOC561188), mRNA Length = 3063 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 cgactccggggactccgacct 310 ||||||||||||||||||||| Sbjct: 1779 cgactccggggactccgacct 1759
>gb|S76596.1| c-kit=receptor tyrosine kinase p145c-kit [cats, fetal head, mRNA, 4222 nt] Length = 4222 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 aggccgacttcgaggagttcg 285 ||||||||||||||||||||| Sbjct: 4141 aggccgacttcgaggagttcg 4121
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 94553 gacttcgaggccgccttcgagcagttcga 94581
>gb|BC095053.1| Danio rerio hypothetical protein LOC553423, mRNA (cDNA clone IMAGE:7237990), partial cds Length = 1263 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 cgactccggggactccgacct 310 ||||||||||||||||||||| Sbjct: 169 cgactccggggactccgacct 149
>gb|BC078369.1| Danio rerio SUMF1 protein, mRNA (cDNA clone IMAGE:7038582), partial cds Length = 1410 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 cgactccggggactccgacct 310 ||||||||||||||||||||| Sbjct: 31 cgactccggggactccgacct 11
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 4332059 gacttcgaggccgccttcgagcagttcga 4332031
>dbj|AB201248.1| Raja kenojei COL2A1 mRNA for type II procollagen alpha 1 chain, partial cds Length = 1802 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 cctcaaggtccccgcggtgac 160 ||||||||||||||||||||| Sbjct: 616 cctcaaggtccccgcggtgac 636
>dbj|AK101949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075D23, full insert sequence Length = 1575 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 259 gacttcgaggccgccttcgagcagttcga 287
>dbj|AK060929.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A09, full insert sequence Length = 1195 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 232 gacttcgaggccgccttcgagcagttcga 260
>dbj|AK060527.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F02, full insert sequence Length = 1249 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 gacttcgaggccgacttcgaggagttcga 286 ||||||||||||| ||||||| ||||||| Sbjct: 260 gacttcgaggccgccttcgagcagttcga 288
>emb|AL121790.4|CNS01DSI Human chromosome 14 DNA sequence BAC R-356O9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203650 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 aaaaggaagagaaagaaccaa 479 ||||||||||||||||||||| Sbjct: 97625 aaaaggaagagaaagaaccaa 97645
>gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, complete sequence Length = 212218 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 aaaaaggaagagaaagaacca 478 ||||||||||||||||||||| Sbjct: 129279 aaaaaggaagagaaagaacca 129259
>gb|U77655.1|STU77655 Solanum tuberosum DNA binding protein homolog (STWAAEIRD) mRNA, complete cds Length = 1138 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 482 caggggtatccgtcagcgcccctggggtaagtgggctgctgaaat 526 |||||| ||||| || || || |||||||| |||||||||||||| Sbjct: 362 caggggaatccgacaacgtccatggggtaaatgggctgctgaaat 406
>gb|AY044235.1| Lycopersicon esculentum transcription factor JERF1 (JERF1) mRNA, complete cds Length = 1391 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 cagcgcccctggggtaagtgggctgctgaaat 526 ||||| || |||||||||||||| |||||||| Sbjct: 408 cagcgtccttggggtaagtgggcagctgaaat 439
>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds Length = 1613 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 176 gaggaggactttgaggccgacttc 199
>gb|AY829439.1| Pennisetum glaucum DREB 2A mRNA, complete cds Length = 1650 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 tggggtaagtgggctgctgaaatc 527 ||||||||||||| |||||||||| Sbjct: 616 tggggtaagtgggttgctgaaatc 639
>ref|XM_549960.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1956 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 228 cggcgcctcgggctggtcgacggcgaggagga 259 |||||||||| | |||||||||||||||||| Sbjct: 645 cggcgcctcgctccggtcgacggcgaggagga 614
>ref|XM_507337.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.31 mRNA Length = 1988 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 786 aggtgatggaggcggcgctg 805
>ref|XM_483774.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 790 aggtgatggaggcggcgctg 809
>gb|DQ227697.1| Pennisetum glaucum transcription factor DREB2A gene, complete cds Length = 1537 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 tggggtaagtgggctgctgaaatc 527 ||||||||||||| |||||||||| Sbjct: 794 tggggtaagtgggttgctgaaatc 817
>gb|AY286010.1| Nicotiana tabacum callus-expressing factor (CEF1) mRNA, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 cagcgcccctggggtaagtgggctgctgaaat 526 ||||| || |||||||||||||| |||||||| Sbjct: 457 cagcgaccttggggtaagtgggcagctgaaat 488
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 158 gacgcggaaggtgatggaggcggcgctg 185 ||||||||||| |||||||||| ||||| Sbjct: 329324 gacgcggaaggggatggaggcgccgctg 329297
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 tcgacggcgaggaggacttcgagg 267 ||||||||||||||||||| |||| Sbjct: 479119 tcgacggcgaggaggactttgagg 479096
>gb|AY246274.1| Capsicum annuum PF1 mRNA, complete cds Length = 1329 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 cagcgcccctggggtaagtgggctgctgaaat 526 ||||| || |||||||||||||| |||||||| Sbjct: 371 cagcgtccttggggtaagtgggcagctgaaat 402
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 274 tcgaggagttcgaggccgactccgggga 301 ||||||||||||||| ||| |||||||| Sbjct: 3454974 tcgaggagttcgaggacgagtccgggga 3455001
>gb|DQ412079.1| Capsicum annuum putative ethylene-responsive element binding protein (JERF1) mRNA, complete cds Length = 1379 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 cagcgcccctggggtaagtgggctgctgaaat 526 ||||| || |||||||||||||| |||||||| Sbjct: 429 cagcgtccttggggtaagtgggcagctgaaat 460
>ref|XM_955110.1| Neurospora crassa OR74A hypothetical protein (NCU05642.1) partial mRNA Length = 2337 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 tcaagccctacgccgccgtc 383 |||||||||||||||||||| Sbjct: 1676 tcaagccctacgccgccgtc 1695
>ref|XM_325496.1| Neurospora crassa OR74A hypothetical protein (NCU05642.1) partial mRNA Length = 2337 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 tcaagccctacgccgccgtc 383 |||||||||||||||||||| Sbjct: 1676 tcaagccctacgccgccgtc 1695
>gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory burst oxidase protein B (rbohB) mRNA, complete cds Length = 3334 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 aaggacgacgacgaggtcgtcgagatca 366 ||||||||||||||| | |||||||||| Sbjct: 437 aaggacgacgacgagctggtcgagatca 464
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tgagaaggacgacgacgagg 354 |||||||||||||||||||| Sbjct: 103427 tgagaaggacgacgacgagg 103408
>gb|AF086832.2| Streptomyces coelicolor putative ferredoxin, ARC (arc), 20S proteasome beta-subunit precursor (prcB), 20S proteasome alpha-subunit (prcA), putative LacI family repressor, and putative transporter genes, complete cds; and unknown genes Length = 10612 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgggctggtcgacggcgagg 255 |||||||||||||||||||| Sbjct: 4809 cgggctggtcgacggcgagg 4790
>ref|XM_838084.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1000) partial mRNA Length = 4569 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 158 gacgcggaaggtgatggaggcggcgctg 185 ||||||||||| |||||||||| ||||| Sbjct: 3173 gacgcggaaggggatggaggcgccgctg 3146
>ref|XM_842975.1| Leishmania major strain Friedlin intraflagellar transport protein IFT88 (LMJ_0371) partial mRNA Length = 2436 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 tcgacggcgaggaggacttcgagg 267 ||||||||||||||||||| |||| Sbjct: 995 tcgacggcgaggaggactttgagg 1018
>ref|XM_755346.1| Ustilago maydis 521 hypothetical protein (UM04292.1) partial mRNA Length = 501 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 tcgacggcgaggaggacttc 263 |||||||||||||||||||| Sbjct: 137 tcgacggcgaggaggacttc 156
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gctggtcgacggcgaggagg 258 |||||||||||||||||||| Sbjct: 1962469 gctggtcgacggcgaggagg 1962450
>ref|XM_803574.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506713.14) partial mRNA Length = 297 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 cagcaaaaaggaagagaaag 473 |||||||||||||||||||| Sbjct: 35 cagcaaaaaggaagagaaag 16
>gb|BC054289.1| Xenopus laevis hypothetical protein MGC64538, mRNA (cDNA clone MGC:64538 IMAGE:6878891), complete cds Length = 1694 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gcaaaaaggaagagaaagaa 475 |||||||||||||||||||| Sbjct: 883 gcaaaaaggaagagaaagaa 864
>ref|XM_848652.1| PREDICTED: Canis familiaris similar to ribosomal protein L34 (LOC611368), mRNA Length = 434 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ggccgacttcgaggagttcg 285 |||||||||||||||||||| Sbjct: 181 ggccgacttcgaggagttcg 200
>emb|BX890592.3| Human DNA sequence from clone XX-C005500511 on chromosome 22, complete sequence Length = 6912 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 ccctctcccaagatgacttc 410 |||||||||||||||||||| Sbjct: 4699 ccctctcccaagatgacttc 4680
>emb|AL513342.7| Human DNA sequence from clone RP11-96F14 on chromosome 1 Contains part of the FMN2 gene for formin 2, complete sequence Length = 127208 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 agagaaagaaccaattcagg 485 |||||||||||||||||||| Sbjct: 106640 agagaaagaaccaattcagg 106621
>emb|AL135911.16| Human DNA sequence from clone RP3-439I14 on chromosome 6q16.3-22.1 Contains part of a novel gene, part of the gene for a novel protein similar to FLJ12457 (contains a 'Cold-shock' DNA-binding domain). Contains two CpG islands, complete sequence Length = 108907 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 cagcaaaaaggaagagaaag 473 |||||||||||||||||||| Sbjct: 42238 cagcaaaaaggaagagaaag 42257
>ref|XM_963068.1| PREDICTED: Tribolium castaneum similar to CG11194-PA (LOC656543), mRNA Length = 1092 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ccgtcaagaggcccctctcc 398 |||||||||||||||||||| Sbjct: 233 ccgtcaagaggcccctctcc 252
>ref|XM_968255.1| PREDICTED: Tribolium castaneum similar to CG31216-PA (LOC662138), mRNA Length = 999 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tccacaaggacctcaaggtc 149 |||||||||||||||||||| Sbjct: 575 tccacaaggacctcaaggtc 594
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 274 tcgaggagttcgaggccgactccgggga 301 ||||||||||||||| ||| |||||||| Sbjct: 340146 tcgaggagttcgaggacgagtccgggga 340173
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 acgacgacgaggtcgtcgag 362 |||||||||||||||||||| Sbjct: 292615 acgacgacgaggtcgtcgag 292634
>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14 Length = 318050 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 274 tcgaggagttcgaggccgactccgggga 301 ||||||||||||||| ||| |||||||| Sbjct: 290730 tcgaggagttcgaggacgagtccgggga 290757
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgggctggtcgacggcgagg 255 |||||||||||||||||||| Sbjct: 218958 cgggctggtcgacggcgagg 218977
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gaaggacgacgacgaggtcg 357 |||||||||||||||||||| Sbjct: 10752 gaaggacgacgacgaggtcg 10771
>emb|AL645846.12| Mouse DNA sequence from clone RP23-244C22 on chromosome 11 Contains a novel gene, the Tob1 gene for transducer of ErbB-2.1, the gene for a novel protein (AY100450) (WFIKKN-like growth and differentiation factor-associated serum protein 1) (Gasp1), a novel gene, the gene for a novel protein (3300001P08Rik) (Luc7a) and one CpG island, complete sequence Length = 188962 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agaagaagaagcccaggcag 212 |||||||||||||||||||| Sbjct: 97974 agaagaagaagcccaggcag 97993
>gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete sequence Length = 35427 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cggcgcctcgggctggtcga 247 |||||||||||||||||||| Sbjct: 30696 cggcgcctcgggctggtcga 30677
>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds Length = 1445 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 156 gaggaggactttgaggccgacttc 179
>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete cds Length = 1584 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 230 gaggaggactttgaggccgacttc 253
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gaaggacgacgacgaggtcg 357 |||||||||||||||||||| Sbjct: 23568071 gaaggacgacgacgaggtcg 23568090
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 15905041 gaggaggactttgaggccgacttc 15905064
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 28036756 aggtgatggaggcggcgctg 28036775
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tgagaaggacgacgacgagg 354 |||||||||||||||||||| Sbjct: 19181529 tgagaaggacgacgacgagg 19181510
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 aaggacgacgacgaggtcgtcgagatca 366 ||||||||||||||| | |||||||||| Sbjct: 14609358 aaggacgacgacgagctggtcgagatca 14609331 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 228 cggcgcctcgggctggtcgacggcgaggagga 259 |||||||||| | |||||||||||||||||| Sbjct: 1238759 cggcgcctcgctccggtcgacggcgaggagga 1238728
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 114248 aggtgatggaggcggcgctg 114267
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 ggtcctgcacaaaggtcagcaaaa 461 |||||||||||||||||| ||||| Sbjct: 2671387 ggtcctgcacaaaggtcaacaaaa 2671364
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cttcagcatcattactactg 426 |||||||||||||||||||| Sbjct: 3909903 cttcagcatcattactactg 3909884
>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1164G11 Length = 142699 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 aaggacgacgacgaggtcgtcgagatca 366 ||||||||||||||| | |||||||||| Sbjct: 90735 aaggacgacgacgagctggtcgagatca 90708
>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445D12 Length = 140952 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 228 cggcgcctcgggctggtcgacggcgaggagga 259 |||||||||| | |||||||||||||||||| Sbjct: 32413 cggcgcctcgctccggtcgacggcgaggagga 32382
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 68167 gaggaggactttgaggccgacttc 68190
>gb|AE005106.1| Halobacterium sp. NRC-1 section 137 of 170 of the complete genome Length = 13219 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 acggcgaggaggacttcgag 266 |||||||||||||||||||| Sbjct: 3464 acggcgaggaggacttcgag 3483
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 34251 aggtgatggaggcggcgctg 34270
>dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C16, full insert sequence Length = 3255 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 aaggacgacgacgaggtcgtcgagatca 366 ||||||||||||||| | |||||||||| Sbjct: 511 aaggacgacgacgagctggtcgagatca 538
>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full insert sequence Length = 1603 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 260 gaggaggactttgaggccgacttc 283
>dbj|AK107230.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E03, full insert sequence Length = 1988 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 786 aggtgatggaggcggcgctg 805
>dbj|AK107117.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A12, full insert sequence Length = 1422 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aggtgatggaggcggcgctg 185 |||||||||||||||||||| Sbjct: 790 aggtgatggaggcggcgctg 809
>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full insert sequence Length = 1596 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 254 gaggaggactttgaggccgacttc 277
>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full insert sequence Length = 1596 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaggaggacttcgaggccgacttc 275 ||||||||||| |||||||||||| Sbjct: 254 gaggaggactttgaggccgacttc 277
>dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O12, full insert sequence Length = 3198 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 aaggacgacgacgaggtcgtcgagatca 366 ||||||||||||||| | |||||||||| Sbjct: 513 aaggacgacgacgagctggtcgagatca 540
>dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B03, full insert sequence Length = 2978 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 aaggacgacgacgaggtcgtcgagatca 366 ||||||||||||||| | |||||||||| Sbjct: 150 aaggacgacgacgagctggtcgagatca 177
>emb|AL953894.5| Zebrafish DNA sequence from clone CH211-212B13 in linkage group 18, complete sequence Length = 222376 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 aaaggaagagaaagaaccaa 479 |||||||||||||||||||| Sbjct: 176008 aaaggaagagaaagaaccaa 176027
>gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA, complete cds Length = 1436 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 caaaaaggaagagaaagaac 476 |||||||||||||||||||| Sbjct: 211 caaaaaggaagagaaagaac 230
>gb|AF110132.1|AF110132 Rattus norvegicus glutamic acid decarboxylase (GAD67) gene, promoter sequence Length = 1118 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 gcaaaaaggaagagaaagaa 475 |||||||||||||||||||| Sbjct: 588 gcaaaaaggaagagaaagaa 607
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 245 cgacggcgaggaggacttcgaggccgacttcgagga 280 ||||||||||||| | |||| |||||||||||||| Sbjct: 111883 cgacggcgaggagttcgtcgacgccgacttcgagga 111918
>gb|AC174719.1| Gasterosteus aculeatus clone VMRC26-161K03, complete sequence Length = 73396 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ggacctcaaggtccccgcggtgac 160 ||||||||||| |||||||||||| Sbjct: 44755 ggacctcaaggaccccgcggtgac 44778
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gaaggacgacgacgaggtcg 357 |||||||||||||||||||| Sbjct: 123974 gaaggacgacgacgaggtcg 123993
>gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, complete sequence Length = 208435 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagagaaagaaccaattcag 484 |||||||||||||||||||| Sbjct: 84147 aagagaaagaaccaattcag 84128
>gb|AC097015.2| Homo sapiens chromosome 3 clone RP11-82B23, complete sequence Length = 178596 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 ctggagctcgggcgcggccgggcg 332 ||||||||||| |||||||||||| Sbjct: 19838 ctggagctcggacgcggccgggcg 19815
>gb|DQ247968.1| Capsicum annuum putative ethylene responsive element binding protein mRNA, partial cds Length = 459 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 cagcgcccctggggtaagtgggctgctgaaat 526 ||||| || |||||||||||||| |||||||| Sbjct: 286 cagcgtccttggggtaagtgggcagctgaaat 317
>gb|DQ247967.1| Capsicum annuum ethylene-responsive element binding protein mRNA, partial cds Length = 501 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 cagcgcccctggggtaagtgggctgctgaaat 526 ||||| || |||||||||||||| |||||||| Sbjct: 322 cagcgtccttggggtaagtgggcagctgaaat 353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,406,563 Number of Sequences: 3902068 Number of extensions: 5406563 Number of successful extensions: 112256 Number of sequences better than 10.0: 143 Number of HSP's better than 10.0 without gapping: 141 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 110232 Number of HSP's gapped (non-prelim): 2016 length of query: 528 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 505 effective length of database: 17,143,297,704 effective search space: 8657365340520 effective search space used: 8657365340520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
