ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart15c01 |
|---|---|
| Clone Library Name | barley_pub |
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 32.7 bits (73), Expect = 0.21 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Frame = +3 Query: 174 NSRLEKAYVALQALKKAITDDPKNMTNNW---CGPDVCSYHGVYCATAPDDPCARTVASV 344 N + + L + ++ DP N+ NW G CS+ GV C+ DD + + Sbjct: 29 NDDFNETALLLAFKQNSVKSDPNNVLGNWKYESGRGSCSWRGVSCS---DD---GRIVGL 82 Query: 345 DLNHGDIAGTL 377 DL + + GTL Sbjct: 83 DLRNSGLTGTL 93
>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Length = 1143 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 165 ATNNSRLEKAYVALQALKKAITDDPKNMTNNWC-GPDVCSYHGVYC 299 +++ S L+ ++L + K I DDP N+ +NW C + GV C Sbjct: 30 SSDQSSLKTDSLSLLSFKTMIQDDPNNILSNWSPRKSPCQFSGVTC 75
>NUDT9_RAT (Q5XIG0) ADP-ribose pyrophosphatase, mitochondrial precursor (EC| 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (Nucleoside diphosphate-linked moiety X motif 9) (Nudix Length = 350 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +3 Query: 219 KAITDDPKNMTNNWCGPDVCSYHGVYCATAPDDPCARTVASVDLNHGDIAG 371 K DDP+N N W + +YH D T+ ++ L GD AG Sbjct: 266 KGYVDDPRNTDNAWMETEAVNYH---------DETGETMDNLTLEAGDDAG 307
>NUDT9_MOUSE (Q8BVU5) ADP-ribose pyrophosphatase, mitochondrial precursor (EC| 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (Nucleoside diphosphate-linked moiety X motif 9) (Nud Length = 350 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +3 Query: 219 KAITDDPKNMTNNWCGPDVCSYHGVYCATAPDDPCARTVASVDLNHGDIAG 371 K DDP+N N W + +YH D T+ ++ L GD AG Sbjct: 266 KGYVDDPRNTDNAWMETEAVNYH---------DETGETMDNLTLEAGDDAG 307
>EXOC2_RAT (O54921) Exocyst complex component 2 (Exocyst complex component| Sec5) (rSec5) Length = 924 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Frame = +3 Query: 291 VYC----ATAPDDPCARTVASVDLNHGDIAGTLPEELGLLSD 404 +YC +T PD T SVD++ D+ G++ E+ GL S+ Sbjct: 667 IYCLEQLSTKPDADIDTTHLSVDVSSPDLFGSIHEDFGLTSE 708
>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor| (Polygalacturonase-inhibiting protein) (PGIP-2) Length = 330 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = +3 Query: 204 LQALKKAITDDPKNMTNNWCGPDVCSYHGVYCATAPDDPCARTVASVDLNHGDIAGTLPE 383 L +KK++ ++P ++ + D CS+ YC D V S+ + G+I+G +P Sbjct: 33 LLKIKKSL-NNPYHLASWDPKTDCCSW---YCLECGDATVNHRVTSLIIQDGEISGQIPP 88 Query: 384 ELG 392 E+G Sbjct: 89 EVG 91
>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat| protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182 autoantigen) (GW1 protein) (EMSY interactor protein) Length = 1962 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 144 QPVGAPPATNNSRLEKAYVALQALKKAITDDPKNMTNNWCGPDV 275 +P+ A A++ S + V QAL K+ PK+M + WCG D+ Sbjct: 1093 EPIAA--ASSTSTWGSSSVGPQALSKS---GPKSMQDGWCGDDM 1131
>GP46_LEIAM (P21978) Surface membrane glycoprotein GP46/M-2 precursor| Length = 476 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Frame = +3 Query: 147 PVGAPPATNN---SRLEKAYVALQALKKAITDDPKNMTNNWCGPDVCSYHGVYCATAPDD 317 PV T++ ++ + LQA +AI + + W G D CS+ + C ++ Sbjct: 28 PVARAAGTSDFTGAQQKNTLTVLQAFARAIPA----LGDTWTGSDFCSWEHIICYSSG-- 81 Query: 318 PCARTVASVDLNHGDIAGTLPE 383 V +++ D GTLPE Sbjct: 82 ------VGVWMHNVDYTGTLPE 97
>GATA_MYCTU (O53258) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 494 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 273 VCSYHGVYCATAPDD--PCARTVASVDLNHGDIAGTLPEE 386 V Y V CA++ D PCARTV L H IAG P + Sbjct: 200 VSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRD 239
>GATA_MYCBO (Q7TXG2) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 494 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 273 VCSYHGVYCATAPDD--PCARTVASVDLNHGDIAGTLPEE 386 V Y V CA++ D PCARTV L H IAG P + Sbjct: 200 VSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRD 239
>GATA_MYCLE (O33105) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 497 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 273 VCSYHGVYCATAPDD--PCARTVASVDLNHGDIAG 371 V Y V CA++ D PCARTV L H IAG Sbjct: 204 VSRYGLVACASSLDQGGPCARTVLDTALLHAVIAG 238
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 Query: 264 GPDVCSYHGVYCATAPDDPCART 332 G D+ ++ V+CAT P DP + T Sbjct: 2823 GTDLSTFTSVWCATRPSDPASAT 2845
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 Query: 264 GPDVCSYHGVYCATAPDDPCART 332 G D+ ++ V+CAT P DP + T Sbjct: 2820 GTDLSTFASVWCATRPSDPASAT 2842
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 285 HGVYCATAPDDPCARTVASVDLNHGDIAGTLPEEL 389 H + P P + + SVDL++ D+ G LPE + Sbjct: 438 HNHFDGYIPSFPPSSLLISVDLSYNDLTGQLPESI 472
>NUDT9_HUMAN (Q9BW91) ADP-ribose pyrophosphatase, mitochondrial precursor (EC| 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (Nucleoside diphosphate-linked moiety X motif 9) (Nud Length = 350 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +3 Query: 219 KAITDDPKNMTNNWCGPDVCSYHGVYCATAPDDPCARTVASVDLNHGDIAG 371 K DDP+N N W + +YH D + ++ L GD AG Sbjct: 266 KGYVDDPRNTDNAWMETEAVNYH---------DETGEIMDNLMLEAGDDAG 307
>CDC27_HUMAN (P30260) Cell division cycle protein 27 homolog (CDC27Hs) (H-NUC)| Length = 824 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +3 Query: 198 VALQALKKAITDDPKNMTNNWCGPDVC 278 VAL L K +TD KN WC C Sbjct: 550 VALSVLSKDLTDMDKNSPEAWCAAGNC 576
>ILF3_MOUSE (Q9Z1X4) Interleukin enhancer-binding factor 3| Length = 898 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 165 ATNNSRLEKAYVALQALKKAITDDPKNMTNN 257 A +N ++ KAY AL AL+K D P + N Sbjct: 569 AGSNKKVAKAYAALAALEKLFPDTPLALEAN 599
>ILF3_HUMAN (Q12906) Interleukin enhancer-binding factor 3 (Nuclear factor of| activated T-cells 90 kDa) (NF-AT-90) (Double-stranded RNA-binding protein 76) (DRBP76) (Translational control protein 80) (TCP80) (Nuclear factor associated with dsRNA) (NFAR) ( Length = 894 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 165 ATNNSRLEKAYVALQALKKAITDDPKNMTNN 257 A +N ++ KAY AL AL+K D P + N Sbjct: 569 AGSNKKVAKAYAALAALEKLFPDTPLALDAN 599 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,735,852 Number of Sequences: 219361 Number of extensions: 364443 Number of successful extensions: 1055 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1040 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1053 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
