ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart15b01 |
|---|---|
| Clone Library Name | barley_pub |
>VAPA_PONPY (Q5R601) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) Length = 242 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + ++++N S V FK +TTAP+ +RP GI+ PG T+ +V Sbjct: 26 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSV 71
>VAPA_HUMAN (Q9P0L0) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa Vamp-associated protein) (VAP-33) Length = 242 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + ++++N S V FK +TTAP+ +RP GI+ PG T+ +V Sbjct: 26 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSV 71
>SCS2_YEAST (P40075) Vesicle-associated membrane protein-associated protein| SCS2 (VAMP-associated protein SCS2) (VAP homolog 1) (Cholin sensitivity suppressor protein 2) Length = 243 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/36 (52%), Positives = 24/36 (66%) Frame = +1 Query: 433 IKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 I N S +AFK +TTAPK +RP ++APGETI Sbjct: 26 ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETI 61
>MSP3_GLORO (P53023) Major sperm protein 3| Length = 125 Score = 39.3 bits (90), Expect = 0.008 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +1 Query: 427 VRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 VRI N + F F+TT PK M PP G+L P E++ Sbjct: 30 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 67
>MSP2_GLORO (P53022) Major sperm protein 2| Length = 125 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 427 VRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 VR+ N + + F F+TT PK M PP G+L P E++ Sbjct: 30 VRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 67
>MSP1_GLORO (P53021) Major sperm protein 1| Length = 125 Score = 39.3 bits (90), Expect = 0.008 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +1 Query: 427 VRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 VRI N + F F+TT PK M PP G+L P E++ Sbjct: 30 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 67
>VAPA_MOUSE (Q9WV55) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa Vamp-associated protein) (VAP-33) Length = 242 Score = 37.7 bits (86), Expect = 0.023 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + ++++N S V FK +TTAP+ +RP GI+ PG + +V Sbjct: 26 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSV 71
>VAPA_RAT (Q9Z270) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa Vamp-associated protein) (VAP-33) Length = 242 Score = 37.4 bits (85), Expect = 0.031 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + ++++N S V FK +TTAP+ +RP G++ PG + +V Sbjct: 26 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV 71
>MSPD2_HUMAN (Q8NHP6) Motile sperm domain-containing protein 2| Length = 518 Score = 36.6 bits (83), Expect = 0.052 Identities = 17/53 (32%), Positives = 31/53 (58%) Frame = +1 Query: 382 KLYFPYEPGKQVRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 +LYF + ++ + + NV+K+ VAFK +TTAP+ ++P PG ++ Sbjct: 335 ELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
>MSPD2_MOUSE (Q9CWP6) Motile sperm domain-containing protein 2| Length = 518 Score = 36.2 bits (82), Expect = 0.068 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +1 Query: 382 KLYFPYEPGKQVRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 +LYF + ++ + + NV+K+ VAFK +TTAP+ ++P PG +I Sbjct: 335 ELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
>VP33_APLCA (Q16943) Vesicle-associated membrane protein/synaptobrevin-binding| protein (VAP-33) Length = 260 Score = 35.8 bits (81), Expect = 0.089 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + +++ N + + FK +TTAPK +RP GIL P +I V Sbjct: 26 VTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAV 71
>YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I| Length = 319 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +1 Query: 379 SKLYFPYEPGKQVRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 S + FP + V+ + ++N + + FK +TTAPK +RP GG + + V Sbjct: 7 STIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEV 64
>VAPB_HUMAN (O95292) Vesicle-associated membrane protein-associated protein B/C| (VAMP-associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C) Length = 242 Score = 33.1 bits (74), Expect = 0.58 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + +++ N + +V FK +TTAP+ +RP GI+ G +I +V Sbjct: 25 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSV 70
>VAPB_RAT (Q9Z269) Vesicle-associated membrane protein-associated protein B| (VAMP-associated protein B) (VAMP-B) (VAP-B) Length = 242 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + +++ N + +V FK +TTAP+ +RP G++ G ++ +V Sbjct: 25 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSV 70
>SCS22_YEAST (Q6Q595) Vesicle-associated membrane protein-associated protein| SCS22 (VAMP-associated protein SCS22) (VAP homolog 2) Length = 175 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +1 Query: 382 KLYFPYEPGKQVRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETI 540 KL F KQ ++++N + V FK +T+AP +RP I+ E++ Sbjct: 7 KLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESV 59
>RGS17_HUMAN (Q9UGC6) Regulator of G-protein signaling 17 (RGS17)| Length = 210 Score = 30.8 bits (68), Expect = 2.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 94 NQGTPHHHTLDGFRRRATILCWCWCC 171 N+GTP G +R C+CWCC Sbjct: 9 NEGTPAVSQAPGNQRPNNTCCFCWCC 34
>CHA2_BOMMO (P08825) Chorion class A protein L12 precursor| Length = 132 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 110 CGVPWLEWLGLGGEWRSRKKNIIGAGCGGVD 18 CG W W GLGG W N +G G G+D Sbjct: 32 CGGGWNGWNGLGGGW-----NGLGVGWNGID 57
>VAPB_MOUSE (Q9QY76) Vesicle-associated membrane protein-associated protein B| (VAMP-associated protein B) (VAMP-associated protein 33b) (VAMP-B) (VAP-B) Length = 242 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +1 Query: 415 VRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGETIIATV 552 V + +++ N + +V FK +TT P+ +RP G++ G ++ +V Sbjct: 25 VTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSV 70
>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3| Length = 450 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1 Query: 58 LDLHSPPKPNHSNQGTPH--HHTLDGFRRRA 144 LDLH+P P+H + G PH H + R RA Sbjct: 98 LDLHAPSHPSHLSHGAPHEQEHAHEIQRHRA 128
>CDC6_HUMAN (Q99741) Cell division control protein 6 homolog (CDC6-related| protein) (p62(cdc6)) (HsCDC6) (HsCDC18) Length = 560 Score = 29.3 bits (64), Expect = 8.3 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = +1 Query: 70 SPPKPNHSNQGTPHHHTLDGFR 135 SPPK G PH HTL G R Sbjct: 74 SPPKQGKKENGPPHSHTLKGRR 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,682,196 Number of Sequences: 219361 Number of extensions: 1216351 Number of successful extensions: 3790 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3786 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
