ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart15a12 |
|---|---|
| Clone Library Name | barley_pub |
>SAP_CAVPO (P20097) Saposin C (CO-beta-glucosidase) (Glucosylceramidase| activator) (Sphingolipid activator protein 2) (SAP-2) Length = 81 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = +1 Query: 313 SPLCPACEKFTNEALSYLGQKQSQDKMMEVLHEACS-QTFSLEKKCVELVDSYATLLFA- 486 S C ACE + + + ++++K++ L C+ S+ + C E+VD+Y + A Sbjct: 2 SVTCKACEYVVKKVMELIDNNRTEEKIIHALDSVCALLPESVSEVCQEVVDTYGDSIVAL 61 Query: 487 KIAEIKPEEFCKRNGLC 537 + E+ PE C GLC Sbjct: 62 LLQEMSPELVCSELGLC 78
>SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta-glucosidase) (A Length = 525 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACSQ-TFSLEKKCVELVDSYA-TLLFAKIA 495 C CE E + +++++++ L + CS+ SL ++C E+VD+Y ++L + Sbjct: 316 CEVCEFVVKEVAKLIDNNRTEEEILHALDKVCSKLPTSLAEQCQEVVDTYGRSILSILLD 375 Query: 496 EIKPEEFCKRNGLCRDNAL 552 E PE C LC L Sbjct: 376 EASPELVCSMLHLCSSRGL 394 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Frame = +1 Query: 274 LTLSKIPVRVERGSPLCPACEKFTNEALSYLGQKQSQDKMMEVLHEACS-QTFSLEKKCV 450 L + + V + C C+K L + ++++++ L + CS K+C Sbjct: 394 LPAATVRVMPRKDGGFCEVCKKLVGYLDRNLEKNSTKEQILAALEKGCSFLPDQYRKQCD 453 Query: 451 ELVDSYATLLFAKIAEIKPEEF-CKRNGLC 537 + V Y +L + E+ F C + G C Sbjct: 454 QFVTEYEPVLIEILVEVMDPSFVCLKIGAC 483
>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B-Val; Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta- Length = 524 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACSQT-FSLEKKCVELVDSY-ATLLFAKIA 495 C CE E + +++ ++++ + CS+ SL ++C E+VD+Y +++L + Sbjct: 315 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 374 Query: 496 EIKPEEFCKRNGLCRDNAL 552 E+ PE C LC L Sbjct: 375 EVSPELVCSMLHLCSGTRL 393
>SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 557 Score = 36.6 bits (83), Expect = 0.050 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACS--QTFSLEKKCVELVDSYATLLFAKI- 492 C C+ EA + L +Q++++ L + C SL C E+VDSY ++ I Sbjct: 63 CDICKTVVTEAGNLLKDNATQEEILHYLEKTCEWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 493 -AEIKPEEFCKRNGLCR 540 P E C LC+ Sbjct: 123 GEMSNPGEVCSALNLCQ 139 Score = 33.1 bits (74), Expect = 0.56 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Frame = +1 Query: 283 SKIPVRV--ERGSPLCPACEKFTNEALSYLGQKQSQDKMMEVLHEACS-QTFSLEKKCVE 453 S +P V ++ C C+K L + ++++++ L + CS +K+C + Sbjct: 427 SALPAHVPPQKNGGFCEVCKKLVLYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDD 486 Query: 454 LVDSYATLLFAKIAEIKPEEF-CKRNGLC 537 V Y LL + E+ F C + G+C Sbjct: 487 FVAEYEPLLLEILVEVMDPGFVCSKIGVC 515
>SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 554 Score = 35.8 bits (81), Expect = 0.086 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACS--QTFSLEKKCVELVDSYATLLFAKI- 492 C C+ EA + L ++++++ L + C+ SL C E+VDSY ++ I Sbjct: 63 CDICKTVVTEAGNLLKDNATEEEILHYLEKTCAWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 493 -AEIKPEEFCKRNGLCR 540 P E C LC+ Sbjct: 123 GEMSNPGEVCSALNLCQ 139 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = +1 Query: 304 ERGSPLCPACEKFTNEALSYLGQKQSQDKMMEVLHEACS-QTFSLEKKCVELVDSYATLL 480 ++ C C+K L + ++++++ L + CS +K+C E V Y LL Sbjct: 433 QKNGGFCEVCKKLVIYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDEFVAEYEPLL 492 Query: 481 FAKIAEIKPEEF-CKRNGLC 537 + E+ F C + G+C Sbjct: 493 LEILVEVMDPSFVCSKIGVC 512
>DBP4_EMENI (Q5BFU1) ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)| Length = 812 Score = 35.0 bits (79), Expect = 0.15 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Frame = +1 Query: 205 GRGTVFLDNEQEARASGQIIKDQLTLSKIPVRVERGSPLCPACEK--FTNEALSYLGQKQ 378 GR +FLD +E ++ + ++T+ +I VR + + + F + L YLGQK Sbjct: 392 GRAVLFLDPSEEKGMLRRLEQKRVTVERINVRANKQQSIKNQLQNMCFKDPELKYLGQKA 451 Query: 379 SQDKMMEVLHEACSQTFSL-EKKCVELVDSYATLLFAKIAEIKPEEFCKRNGLCRDNALL 555 + V + +TF+L E K + S +I IK ++ +R R A L Sbjct: 452 FISYVKSVYIQKDKETFNLKELKLDDFAASLGLPGAPRIKFIKGDDTKERKNASRATAYL 511 Query: 556 S 558 + Sbjct: 512 T 512
>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;| Saposin B; Saposin C; Saposin D] Length = 518 Score = 34.3 bits (77), Expect = 0.25 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACS--QTFSLEKKCVELVDSYATLLFAKIA 495 C C++ L ++D++ L + C L +C E+VDSY ++ I Sbjct: 64 CDLCKELVTVVGKVLKDNGTEDEIRSYLEKRCEFLPDQGLASECKEIVDSYLPVIMDMIK 123 Query: 496 E--IKPEEFCKRNGLCR 540 E KPE C LC+ Sbjct: 124 EEFDKPEVVCSALSLCQ 140
>PSPB_RAT (P22355) Pulmonary surfactant-associated protein B precursor (SP-B)| (Pulmonary surfactant-associated proteolipid SPL(Phe)) Length = 376 Score = 32.3 bits (72), Expect = 0.95 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Frame = +1 Query: 319 LCPACEKFTNEALSYLGQKQSQDKMMEVLHEACS--QTFSLEKKCVELVDSYATLLFAKI 492 LC CE + + QD + + L + C L +C +++D Y L+ Sbjct: 66 LCQECEDIVHLLTKMTKEDAFQDTIRKFLEQECDILPLKLLVPRCRQVLDVYLPLVIDYF 125 Query: 493 -AEIKPEEFCKRNGLC 537 +IKP+ C GLC Sbjct: 126 QGQIKPKAICSHVGLC 141 Score = 30.0 bits (66), Expect = 4.7 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACSQTFSLEKKCVELVDSYATLLFAKIAEI 501 C C+ N+A + S+ M + +H+AC + + +KC + V+ + L A + Sbjct: 294 CHFCKSVINQAWN-----TSEQAMPQAMHQACLRFWLDRQKCEQFVEQHMPQLLALVPRS 348 Query: 502 K-PEEFCKRNGLC 537 + C+ G+C Sbjct: 349 QDAHTSCQALGVC 361
>RY44_DROME (Q24498) Ryanodine receptor 44F| Length = 5127 Score = 32.3 bits (72), Expect = 0.95 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Frame = +2 Query: 398 RSFMKLVLRHSRWRRSVLSWWTPMQLSYLPRSRRSSQKSS------ANEMASAGTMLFCL 559 RS +L L ++W ++W+ PM++ ++ R S E AS T FCL Sbjct: 256 RSLWRLELARTKWTGGFINWYHPMRIRHITTGRYLGVNDSNELILVKKEEASIATTTFCL 315
>PSPB_MOUSE (P50405) Pulmonary surfactant-associated protein B precursor (SP-B)| (Pulmonary surfactant-associated proteolipid SPL(Phe)) Length = 377 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +1 Query: 322 CPACEKFTNEALSYLGQKQSQDKMMEVLHEACSQTFSLEKKCVELVDSYATLLFAKIAEI 501 C C+ N+A + S+ M + +H+AC + + +KC + V+ + L A + Sbjct: 295 CHFCKSVINQAWN-----TSEQAMPQAMHQACLRFWLDRQKCEQFVEQHMPQLLALVPRS 349 Query: 502 KPEEF-CKRNGLC 537 + C+ G+C Sbjct: 350 QDAHITCQALGVC 362
>ASPR_HORVU (P42210) Phytepsin precursor (EC 3.4.23.40) (Aspartic proteinase)| [Contains: Phytepsin 32 kDa subunit; Phytepsin 29 kDa subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa subunit] Length = 508 Score = 30.8 bits (68), Expect = 2.8 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%) Frame = +1 Query: 307 RGSPLCPACEKFTNEALSYLGQKQSQDKMMEVLHEACSQTFS-LEKKCVE------LVDS 465 R P+C ACE + L Q ++QD +++ +++ C++ S + + V+ + D Sbjct: 377 RADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDI 436 Query: 466 YATLLFAKIAEIKPEEFCKRNG 531 T+ K A +KPEE+ + G Sbjct: 437 EFTIGGKKFA-LKPEEYILKVG 457
>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular| weight form of myosin I) (HMWMI) Length = 1577 Score = 30.4 bits (67), Expect = 3.6 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Frame = +1 Query: 256 QIIKDQLTLSKIPVRVERGSPLCPAC-------EKFTNEALSYLGQKQSQDKMMEVLHE 411 QIIK QLT + P V +G L C E+F N +L K DK +E+LH+ Sbjct: 1324 QIIK-QLTENPSPQSVTKGWQLMRCCLQTFPPSEEFANCLEMFLAAKGKDDKYIEMLHD 1381
>Y1249_LEGPL (Q5WX49) UPF0082 protein lpl1249| Length = 247 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +1 Query: 340 FTNEALSYLGQKQSQDKMMEVLHEACSQTFSLEKKCVEL---VDSYATLLFA 486 FTN+ + Q +DK+ME+ +A + ++E +E+ V++Y T+L A Sbjct: 134 FTNQGEILMASNQPEDKVMEIAIDAGASDVAVEDSQIEIITPVEAYHTVLNA 185
>Y1249_LEGPA (Q5X5S1) UPF0082 protein lpp1249| Length = 247 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +1 Query: 340 FTNEALSYLGQKQSQDKMMEVLHEACSQTFSLEKKCVEL---VDSYATLLFA 486 FTN+ + Q +DK+ME+ +A + ++E +E+ V++Y T+L A Sbjct: 134 FTNQGEILMASNQPEDKVMEIAIDAGASDVAVEDSQIEIITPVEAYHTVLNA 185
>JPH1_HUMAN (Q9HDC5) Junctophilin-1 (Junctophilin type 1) (JP-1)| Length = 661 Score = 30.0 bits (66), Expect = 4.7 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -1 Query: 254 PDARASCSLSRK--TVPR-PCALPRLTSSKRSRQKGNLSPKPIAREVPTLTLRLGNRARS 84 P + S RK T PR P A P+ + S S SPKP+ ++ P+ RL RS Sbjct: 447 PTPKESPHFYRKGTTPPRSPEASPKHSHSPAS------SPKPLKKQNPSSGARLNQDKRS 500 Query: 83 RREEQVVVRLGRP 45 +EQV + +P Sbjct: 501 VADEQVTAIVNKP 513
>DOK3_HUMAN (Q7L591) Docking protein 3 (Downstream of tyrosine kinase 3)| Length = 496 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = -1 Query: 248 ARASCSLSRKTVPRPCALPRLTSSKRSRQKGNLSPKPIAREVPT 117 AR L T P+PC LPR TS G L P E PT Sbjct: 308 ARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPT 351
>REEP4_BOVIN (Q3ZCI8) Receptor expression-enhancing protein 4| Length = 257 Score = 30.0 bits (66), Expect = 4.7 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -1 Query: 251 DARASCSLSRKTVPRPCALPRLTSSKRSRQKGNLSPKPIAREVPTLTLRLGNRARS 84 D C + VP+P A PR RS+ + KP+ARE + +L++ R ++ Sbjct: 195 DTDNECWSDTEVVPQPPARPREKPLGRSQSLRVIKRKPLAREGTSRSLKVRTRKKT 250
>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7071 Score = 30.0 bits (66), Expect = 4.7 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +1 Query: 295 VRVERGSPLCPACEKFTNEALSYLGQKQSQDKMMEVLHEACSQ--TFSLEKKCVELVDSY 468 +RVE S L C + N+ L ++ +KM+ +L S + K C E++D+ Sbjct: 3854 LRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNR 3913 Query: 469 ATL 477 ATL Sbjct: 3914 ATL 3916
>LYXK_PASMU (P57928) Probable L-xylulose kinase (EC 2.7.1.53) (L-xylulokinase)| Length = 483 Score = 29.6 bits (65), Expect = 6.1 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 196 SAQGRGTVFLDNEQEARASGQIIKDQLTLSKIPVRVERGSP 318 SAQG+G LD E + G + DQ L+ + E+G P Sbjct: 78 SAQGKGAFLLDQENKPLGRGILSSDQRALTLVKQWQEQGIP 118
>DBP4_ASPFU (Q4WM60) ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)| Length = 787 Score = 29.6 bits (65), Expect = 6.1 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +1 Query: 202 QGRGTVFLDNEQEARASGQIIKDQLTLSKIPVRVERGSPLCPACEK--FTNEALSYLGQK 375 +GR +FLD +E ++ + ++ + KI ++ + + + F + L YLGQK Sbjct: 390 EGRAVLFLDPSEEEGMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYLGQK 449 Query: 376 QSQDKMMEVLHEACSQTFSL-EKKCVELVDSYATLLFAKIAEIKPEEFCKRNGLCRDNAL 552 + V + + F L E K E S +I IK ++ +R R A Sbjct: 450 AFISYVKSVYIQKDKEIFKLKELKLDEFAASLGLPGAPRIKFIKGDDTKQRKNAPRAAAH 509 Query: 553 L 555 L Sbjct: 510 L 510
>DBP4_NEUCR (Q7RZ35) ATP-dependent RNA helicase dbp-4 (EC 3.6.1.-)| Length = 823 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Frame = +1 Query: 199 AQGRGTVFLDNEQEARASGQIIKDQLTLSKIPVRVERGSPLCPACEK--FTNEALSYLGQ 372 ++GR +FLD +E ++ ++T+ K+ V+ + + + F + L YLGQ Sbjct: 399 SKGRAVLFLDPSEEEGFLKRLEHKKVTVQKVNVKENKKKSIKNELQSQCFQSPDLKYLGQ 458 Query: 373 KQSQDKMMEVLHEACSQTFSLEK 441 K + + + + F +K Sbjct: 459 KAFVSYVRSIYLQKDKEVFKFDK 481
>Y1286_LEGPH (Q5ZW02) UPF0082 protein lpg1286| Length = 247 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +1 Query: 340 FTNEALSYLGQKQSQDKMMEVLHEACSQTFSLEKKCVEL---VDSYATLLFA 486 FTN+ + Q +DK+ME+ +A + ++E +E+ V++Y T+L A Sbjct: 134 FTNQGEILMASNQPEDKVMEIAIDAGASDVAVEDGQIEIITPVEAYHTVLNA 185
>CTPC_MYCLE (Q9CCL1) Probable cation-transporting P-type ATPase C (EC 3.6.3.-)| Length = 725 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +3 Query: 9 IHTRHTKAEKKIRTTQTHHHLLLPAAACSIPQPQGQR 119 IH+RH AE IR+T+ H + P C + G R Sbjct: 452 IHSRHPLAEAVIRSTEERHISIPPHEECEVLVGLGMR 488
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 12 HTRHTKAEKKIRTTQTHHHLLLPAAACSIPQPQGQRG 122 H +HT+ + R Q HH A + QPQG +G Sbjct: 1874 HAQHTQQAQHARNAQQAHHTQQVQQAQHVQQPQGLQG 1910 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,593,471 Number of Sequences: 219361 Number of extensions: 1652767 Number of successful extensions: 4915 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4588 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4914 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
