Clone Name | bart15a12 |
---|---|
Clone Library Name | barley_pub |
>gb|BT019230.1| Zea mays clone Contig903.F mRNA sequence Length = 727 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 395 tggaggtccttcatgaagcttgttctcagacattctcgttggagaagaagtgtgttgagt 454 ||||| |||||||||| ||||| || || ||||||| || || |||||||||| ||| Sbjct: 364 tggagttccttcatgatgcttgctcccaatcattctcctttgaacagaagtgtgtcgagc 423 Query: 455 tggtggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagt 514 || ||||||| ||||| |||||| | |||||||||||| ||||||||| || |||| || Sbjct: 424 tgatggactcttatgcgactctcctgtttgccaagatcacggagatcagaccggaagcgt 483 Query: 515 tctgcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgt 563 |||||||||| ||||||| |||||||||| |||||||| || ||||| Sbjct: 484 tctgcaaacggtatggcctgtgcagggacacggctcttctctccggtgt 532
>gb|AY103886.1| Zea mays PCO129988 mRNA sequence Length = 2158 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 395 tggaggtccttcatgaagcttgttctcagacattctcgttggagaagaagtgtgttgagt 454 ||||| |||||||||| ||||| || || ||||||| || || |||||||||| ||| Sbjct: 640 tggagttccttcatgatgcttgctcccaatcattctcctttgaacagaagtgtgtcgagc 699 Query: 455 tggtggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagt 514 || ||||||| ||||| |||||| | |||||||||||| ||||||||| || |||| || Sbjct: 700 tgatggactcttatgcgactctcctgtttgccaagatcacggagatcagaccggaagcgt 759 Query: 515 tctgcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgt 563 |||||||||| ||||||| |||||||||| |||||||| || ||||| Sbjct: 760 tctgcaaacggtatggcctgtgcagggacacggctcttctctccggtgt 808
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 458 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 517 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 629142 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 629201 Query: 518 gcaaacgaaatggcctctgcagggaca 544 |||||| |||||||||||||||||| Sbjct: 629202 gcaaacagtatggcctctgcagggaca 629228 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 401 tccttcatgaagcttgttctcagacattctc 431 |||||||||| ||||||||||||||||||| Sbjct: 628901 tccttcatgacacttgttctcagacattctc 628931
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 458 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 517 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 629142 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 629201 Query: 518 gcaaacgaaatggcctctgcagggaca 544 |||||| |||||||||||||||||| Sbjct: 629202 gcaaacagtatggcctctgcagggaca 629228 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 401 tccttcatgaagcttgttctcagacattctc 431 |||||||||| ||||||||||||||||||| Sbjct: 628901 tccttcatgacacttgttctcagacattctc 628931
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 458 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 517 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 19701 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 19642 Query: 518 gcaaacgaaatggcctctgcagggaca 544 |||||| |||||||||||||||||| Sbjct: 19641 gcaaacagtatggcctctgcagggaca 19615 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 401 tccttcatgaagcttgttctcagacattctc 431 |||||||||| ||||||||||||||||||| Sbjct: 19942 tccttcatgacacttgttctcagacattctc 19912
>dbj|AK120247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044M10, full insert sequence Length = 1025 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 401 tccttcatgaagcttgttctcagacattctcgttggagaagaagtgtgttgagttggtgg 460 |||||||||| ||||||||||||||||||| || ||| | |||||| ||||| ||| Sbjct: 544 tccttcatgacacttgttctcagacattctcctttgagcaaaagtgtcttgagactatgg 603 Query: 461 actcctatgcaactctcttatttgccaagatcgcggagatcaagccag 508 |||||||||||||||| | ||||| || || || ||||||||||||| Sbjct: 604 actcctatgcaactcttgtctttgcaaaaattgctgagatcaagccag 651
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 458 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 517 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 592853 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 592912 Query: 518 gcaaacgaaatggcctctgcagggaca 544 |||||| |||||||||||||||||| Sbjct: 592913 gcaaacagtatggcctctgcagggaca 592939 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 401 tccttcatgaagcttgttctcagacattctc 431 |||||||||| ||||||||||||||||||| Sbjct: 592605 tccttcatgacacttgttctcagacattctc 592635 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tgagaagtttacaaatgaag 352 |||||||||||||||||||| Sbjct: 8779254 tgagaagtttacaaatgaag 8779273
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 458 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 517 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 592853 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 592912 Query: 518 gcaaacgaaatggcctctgcagggaca 544 |||||| |||||||||||||||||| Sbjct: 592913 gcaaacagtatggcctctgcagggaca 592939 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 401 tccttcatgaagcttgttctcagacattctc 431 |||||||||| ||||||||||||||||||| Sbjct: 592605 tccttcatgacacttgttctcagacattctc 592635 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tgagaagtttacaaatgaag 352 |||||||||||||||||||| Sbjct: 8850017 tgagaagtttacaaatgaag 8850036
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 458 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 517 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 150119 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 150060 Query: 518 gcaaacgaaatggcctctgcagggaca 544 |||||| |||||||||||||||||| Sbjct: 150059 gcaaacagtatggcctctgcagggaca 150033 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 401 tccttcatgaagcttgttctcagacattctc 431 |||||||||| ||||||||||||||||||| Sbjct: 150367 tccttcatgacacttgttctcagacattctc 150337
>ref|XM_584248.2| PREDICTED: Bos taurus similar to Kinesin-like protein KIF1B (Klp) (LOC507604), partial mRNA Length = 5037 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 ctcctcttgctgctcgtcagcc 190 |||||||||||||||||||||| Sbjct: 1832 ctcctcttgctgctcgtcagcc 1811
>gb|AC009411.2| Homo sapiens BAC clone RP11-342D1 from 2, complete sequence Length = 170804 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 ccactatgcccagcttgtgaga 337 |||||||||||||||||||||| Sbjct: 20430 ccactatgcccagcttgtgaga 20451
>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence Length = 246249 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 cacaagataaaatgatggagg 400 ||||||||||||||||||||| Sbjct: 167464 cacaagataaaatgatggagg 167484 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 90018 ccttctgtctactcctcttg 90037
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 gccaagatcgcggagatcaag 504 ||||||||||||||||||||| Sbjct: 436707 gccaagatcgcggagatcaag 436727
>dbj|AB086653.1| Streptomyces halstedii vicenistatin biosynthetic gene cluster (vinR1, vinA, vinB, vinC, vinP2, vinP3, vinP4, vinG, vinF, vinD, vinE, vinH, vinI, vinJ, vinK, vinL, vinM, vinN, vinO, vinP1), partial and complete cds Length = 64492 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 acgcaccaccacctgctcctc 77 ||||||||||||||||||||| Sbjct: 25439 acgcaccaccacctgctcctc 25419 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 acgcaccaccacctgctcctc 77 ||||||||||||||||||||| Sbjct: 15267 acgcaccaccacctgctcctc 15247
>gb|AC079446.30| Mus musculus strain C57BL/6J chromosome X clone rp23-9p22, complete sequence Length = 223309 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cccttctgtctactcctcttg 177 ||||||||||||||||||||| Sbjct: 62184 cccttctgtctactcctcttg 62204
>gb|U51562.1|PSU51562 Prunus serotina (R)-(+)-mandelonitrile lyase isoform MDL3 precursor (MDL3) gene, complete cds Length = 4748 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 caatcacaagataaaatgatg 396 ||||||||||||||||||||| Sbjct: 2179 caatcacaagataaaatgatg 2159
>emb|AL671922.16| Mouse DNA sequence from clone RP23-295K1 on chromosome X, complete sequence Length = 144463 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cccttctgtctactcctcttg 177 ||||||||||||||||||||| Sbjct: 78525 cccttctgtctactcctcttg 78545
>gb|AY451974.1| Solenodon paradoxus phospholipase C beta 4 (PLCB4) gene, 3' UTR Length = 266 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ctatacatacacgacacacaaaag 30 ||||||||||| |||||||||||| Sbjct: 112 ctatacatacaggacacacaaaag 89
>gb|AC101978.6| Mus musculus chromosome 3, clone RP24-335I21, complete sequence Length = 185025 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 78997 ccttctgtctactcctcttg 78978
>ref|NM_128832.3| Arabidopsis thaliana unknown protein AT2G32730 mRNA, complete cds Length = 3416 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccaccacctgctcctccc 79 |||||||||||||||||||| Sbjct: 1462 caccaccacctgctcctccc 1443
>gb|AC163390.2| Mus musculus chromosome 1, clone RP24-300C19, complete sequence Length = 180465 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 165154 ccttctgtctactcctcttg 165173
>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0059C14, complete sequence Length = 142138 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tgagaagtttacaaatgaag 352 |||||||||||||||||||| Sbjct: 78025 tgagaagtttacaaatgaag 78044
>gb|AC167171.2| Mus musculus BAC clone RP23-409H8 from chromosome 13, complete sequence Length = 203840 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 167297 ccttctgtctactcctcttg 167316
>gb|AC110734.9| Mus musculus chromosome 1, clone RP24-113C15, complete sequence Length = 134073 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 109688 ccttctgtctactcctcttg 109707
>gb|AC110908.13| Mus musculus chromosome 7, clone RP24-181E10, complete sequence Length = 173230 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 96682 ccttctgtctactcctcttg 96701 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 92236 ccttctgtctactcctcttg 92255
>gb|AC161409.11| Mus musculus chromosome 7, clone RP23-292B24, complete sequence Length = 185365 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 123158 ccttctgtctactcctcttg 123139 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 78798 ccttctgtctactcctcttg 78779 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 25318 ccttctgtctactcctcttg 25299
>ref|XM_417075.1| PREDICTED: Gallus gallus similar to MGC75495 protein (LOC418881), mRNA Length = 4119 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gaagcttgttctcagacatt 428 |||||||||||||||||||| Sbjct: 2418 gaagcttgttctcagacatt 2437
>gb|AY239610.1| Synthetic construct 26S proteasome subunit RPN2A (RPN2A) gene, partial cds Length = 3018 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccaccacctgctcctccc 79 |||||||||||||||||||| Sbjct: 1339 caccaccacctgctcctccc 1320
>gb|AY230830.1| Arabidopsis thaliana 26S proteasome subunit RPN2a (RPN2a) mRNA, complete cds Length = 3178 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccaccacctgctcctccc 79 |||||||||||||||||||| Sbjct: 1421 caccaccacctgctcctccc 1402
>gb|AY530074.1| Solenodon paradoxus PLCB4 gene, partial sequence Length = 316 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ctatacatacacgacacacaaaag 30 ||||||||||| |||||||||||| Sbjct: 146 ctatacatacaggacacacaaaag 123
>gb|AC146424.3| Pan troglodytes BAC clone RP43-26H22 from 7, complete sequence Length = 195194 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ttgcccttctgtctactcct 173 |||||||||||||||||||| Sbjct: 75114 ttgcccttctgtctactcct 75095
>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete sequence Length = 224526 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 141773 ccttctgtctactcctcttg 141792
>ref|XM_658586.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6074.2), mRNA Length = 912 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcaccaccacctgctcctcc 78 |||||||||||||||||||| Sbjct: 652 gcaccaccacctgctcctcc 671
>gb|AC127303.3| Mus musculus BAC clone RP23-280E20 from chromosome X, complete sequence Length = 212318 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 101253 ccttctgtctactcctcttg 101234
>gb|AC157900.3| Mus musculus chromosome 18, clone RP23-10A11, complete sequence Length = 200258 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 56043 ccttctgtctactcctcttg 56062
>gb|BC067327.1| Xenopus tropicalis nucleoporin 93kDa, mRNA (cDNA clone MGC:76268 IMAGE:5379233), complete cds Length = 2592 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 ggacaatgctcttctgtctg 559 |||||||||||||||||||| Sbjct: 339 ggacaatgctcttctgtctg 358
>gb|AC139054.17| Mus musculus chromosome 15, clone RP23-14D20, complete sequence Length = 207292 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 48185 ccttctgtctactcctcttg 48204
>gb|BC045089.1| Xenopus laevis dead eye-like, mRNA (cDNA clone MGC:53870 IMAGE:5543002), complete cds Length = 2639 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 ggacaatgctcttctgtctg 559 |||||||||||||||||||| Sbjct: 384 ggacaatgctcttctgtctg 403
>emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chromosome 17, complete sequence Length = 210326 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 60487 ccttctgtctactcctcttg 60506
>emb|CT009734.9| Mouse DNA sequence from clone RP23-182E3 on chromosome 14, complete sequence Length = 202398 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 193464 ccttctgtctactcctcttg 193445
>gb|AC110563.4| Mus musculus chromosome 3, clone RP23-287O4, complete sequence Length = 237878 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 32335 ccttctgtctactcctcttg 32316
>gb|AC121956.3| Mus musculus BAC clone RP24-225I19 from chromosome 7, complete sequence Length = 191330 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 ccactatgcccagcttgtgagaag 339 |||||||||||||||| ||||||| Sbjct: 165525 ccactatgcccagcttttgagaag 165502
>gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome 3, complete sequence Length = 193517 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 8959 ccttctgtctactcctcttg 8940
>gb|AC117235.3| Mus musculus BAC clone RP23-415F18 from 17, complete sequence Length = 207331 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 32836 ccttctgtctactcctcttg 32817
>gb|AC123829.2| Mus musculus BAC clone RP24-117E16 from 2, complete sequence Length = 172335 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 157017 ccttctgtctactcctcttg 156998
>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence Length = 188867 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 70537 ccttctgtctactcctcttg 70556
>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence Length = 209706 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 40259 ccttctgtctactcctcttg 40278
>gb|AC098714.2| Mus musculus BAC clone RP23-2C22 from 7, complete sequence Length = 201178 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 83849 ccttctgtctactcctcttg 83830
>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence Length = 230585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 74276 ccttctgtctactcctcttg 74295
>gb|AC154334.2| Mus musculus BAC clone RP24-497L7 from chromosome 14, complete sequence Length = 127819 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 44627 ccttctgtctactcctcttg 44646
>gb|AC145771.1| Pan troglodytes BAC clone RP43-14A5 from 7, complete sequence Length = 155040 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ttgcccttctgtctactcct 173 |||||||||||||||||||| Sbjct: 154842 ttgcccttctgtctactcct 154823
>gb|AC114407.24| Mus musculus chromosome 10, clone RP23-51G1, complete sequence Length = 143388 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 107999 ccttctgtctactcctcttg 107980
>gb|AC161037.3| Mus musculus chromosome 7, clone RP24-255H18, complete sequence Length = 184362 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 167496 ccttctgtctactcctcttg 167515
>gb|AC138364.8| Mus musculus chromosome 7, clone RP23-243D10, complete sequence Length = 199717 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 ccactatgcccagcttgtgagaag 339 |||||||||||||||| ||||||| Sbjct: 42621 ccactatgcccagcttttgagaag 42598
>emb|AL136132.15| Human DNA sequence from clone RP11-141M24 on chromosome 13q33.1-34 Contains part of a novel gene, possible ortholog of rat myosin heavy chain Myr 8 (Loc192253), complete sequence Length = 173738 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ctatacatacacgacacaca 26 |||||||||||||||||||| Sbjct: 127178 ctatacatacacgacacaca 127197
>gb|AC157795.4| Mus musculus chromosome 1, clone RP24-122B24, complete sequence Length = 158636 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 132911 ccttctgtctactcctcttg 132892
>ref|NM_213714.1| Xenopus tropicalis nucleoporin 93kDa (nup93), mRNA Length = 2592 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 ggacaatgctcttctgtctg 559 |||||||||||||||||||| Sbjct: 339 ggacaatgctcttctgtctg 358
>gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, complete sequence Length = 164201 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 63025 ccttctgtctactcctcttg 63006
>gb|AC154634.2| Mus musculus BAC clone RP23-298D14 from chromosome 14, complete sequence Length = 218356 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 59151 ccttctgtctactcctcttg 59170
>gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosome 19, complete sequence Length = 184864 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 35272 ccttctgtctactcctcttg 35291
>gb|AC161408.4| Mus musculus chromosome 1, clone RP24-329G10, complete sequence Length = 154449 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 76040 ccttctgtctactcctcttg 76059
>emb|AL732438.17| Mouse DNA sequence from clone RP23-317K5 on chromosome X, complete sequence Length = 157834 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 62535 ccttctgtctactcctcttg 62554
>gb|AC174478.3| Mus musculus BAC clone RP24-72B9 from chromosome y, complete sequence Length = 186313 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 84364 ccttctgtctactcctcttg 84383
>gb|AY099861.1| Arabidopsis thaliana 26S proteasome regulatory subunit (At2g32730) mRNA, complete cds Length = 3351 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caccaccacctgctcctccc 79 |||||||||||||||||||| Sbjct: 1462 caccaccacctgctcctccc 1443
>gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L7 map TEn5, complete sequence Length = 92612 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 caccaccacctgctcctccc 79 |||||||||||||||||||| Sbjct: 55973 caccaccacctgctcctccc 55992
>gb|AC102416.5| Mus musculus chromosome 18, clone RP24-492H24, complete sequence Length = 190211 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 52742 ccttctgtctactcctcttg 52723
>gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Hospital Oakland Research Institute) complete sequence Length = 208229 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 91393 ccttctgtctactcctcttg 91412
>dbj|AK081590.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130048D21 product:unclassifiable, full insert sequence Length = 3302 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 ccactatgcccagcttgtgagaag 339 |||||||||||||||| ||||||| Sbjct: 45 ccactatgcccagcttttgagaag 22
>gb|AC153014.4| Mus musculus BAC clone RP23-203I6 from chromosome 19, complete sequence Length = 195382 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 183764 ccttctgtctactcctcttg 183783
>gb|AC115748.8| Mus musculus chromosome 1, clone RP23-13N24, complete sequence Length = 202092 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 169327 ccttctgtctactcctcttg 169308
>emb|BX530092.15| Mouse DNA sequence from clone RP23-45N17 on chromosome X, complete sequence Length = 136088 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 90794 ccttctgtctactcctcttg 90813
>gb|AC155837.7| Mus musculus 6 BAC RP24-409L6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156886 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccttcatgaagcttgttctc 421 |||||||||||||||||||| Sbjct: 63687 ccttcatgaagcttgttctc 63706
>gb|AC153939.3| Mus musculus 10 BAC RP24-173I5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145018 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 53268 ccttctgtctactcctcttg 53249
>gb|AC069019.8|AC069019 Mus musculus BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 196175 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 gaagtgtgttgagttggtgg 460 |||||||||||||||||||| Sbjct: 19681 gaagtgtgttgagttggtgg 19662
>gb|AC010401.7| Homo sapiens chromosome 16 clone CTD-2135D7, complete sequence Length = 119154 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 aggggcagcccactatgcccagct 330 ||||||| |||||||||||||||| Sbjct: 46059 aggggcaccccactatgcccagct 46082
>gb|AC124356.4| Mus musculus BAC clone RP24-484D12 from chromosome 12, complete sequence Length = 161982 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 25120 ccttctgtctactcctcttg 25139
>emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chromosome X, complete sequence Length = 58222 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 11520 ccttctgtctactcctcttg 11501
>gb|AC153535.4| Mus musculus 10 BAC RP23-398N22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200061 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 72336 ccttctgtctactcctcttg 72317
>emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chromosome X, complete sequence Length = 195763 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 12968 ccttctgtctactcctcttg 12949
>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence Length = 176340 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ataaaatgatggaggtcctt 405 |||||||||||||||||||| Sbjct: 109971 ataaaatgatggaggtcctt 109990
>gb|AC154863.2| Mus musculus BAC clone RP23-1M22 from 12, complete sequence Length = 204102 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 4928 ccttctgtctactcctcttg 4909
>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence Length = 199709 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 96264 ccttctgtctactcctcttg 96283
>gb|AC107648.11| Mus musculus chromosome 19, clone RP23-126M4, complete sequence Length = 210931 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 183734 ccttctgtctactcctcttg 183753
>gb|AC154381.2| Mus musculus BAC clone RP23-42E2 from 16, complete sequence Length = 201052 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 169363 ccttctgtctactcctcttg 169382
>gb|AC171680.5| Mus musculus chromosome 7, clone RP23-146B24, complete sequence Length = 200031 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 195809 ccttctgtctactcctcttg 195790 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 144107 ccttctgtctactcctcttg 144088
>emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chromosome X, complete sequence Length = 104719 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 11520 ccttctgtctactcctcttg 11501
>emb|CT030656.7| Mouse DNA sequence from clone RP23-271O7 on chromosome 9, complete sequence Length = 215427 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 56669 ccttctgtctactcctcttg 56688
>emb|BX072557.8| Mouse DNA sequence from clone RP23-79L4 on chromosome X, complete sequence Length = 198694 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 13575 ccttctgtctactcctcttg 13556
>gb|AC116886.6| Mus musculus chromosome 5, clone RP24-441G10, complete sequence Length = 168069 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 37777 ccttctgtctactcctcttg 37758
>emb|AL844177.15| Mouse DNA sequence from clone RP23-414O19 on chromosome 4, complete sequence Length = 144217 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 52618 ccttctgtctactcctcttg 52637
>emb|CT030664.5| Mouse DNA sequence from clone RP23-357K7 on chromosome 13, complete sequence Length = 192064 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 25224 ccttctgtctactcctcttg 25243
>gb|AC122854.4| Mus musculus BAC clone RP23-178L9 from 1, complete sequence Length = 197331 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 38754 ccttctgtctactcctcttg 38773
>emb|AL844564.14| Mouse DNA sequence from clone RP23-400D4 on chromosome 11, complete sequence Length = 196136 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gaagtgtgttgagttggtgg 460 |||||||||||||||||||| Sbjct: 14601 gaagtgtgttgagttggtgg 14620
>gb|U63919.1|XLU63919 Xenopus laevis An4a mRNA, complete cds Length = 3112 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 ggacaatgctcttctgtctg 559 |||||||||||||||||||| Sbjct: 390 ggacaatgctcttctgtctg 409
>gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome 17, complete sequence Length = 219714 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 46760 ccttctgtctactcctcttg 46779
>emb|AL683818.12| Mouse DNA sequence from clone RP23-229B23 on chromosome 4, complete sequence Length = 210718 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 109363 ccttctgtctactcctcttg 109344
>emb|AL713897.7| Mouse DNA sequence from clone RP23-373J8 on chromosome X, complete sequence Length = 166240 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 25147 ccttctgtctactcctcttg 25128
>emb|AL672222.11| Mouse DNA sequence from clone RP23-330A15 on chromosome X, complete sequence Length = 194025 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 57234 ccttctgtctactcctcttg 57215
>emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chromosome X, complete sequence Length = 188627 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 29437 ccttctgtctactcctcttg 29456
>emb|AL732470.7| Mouse DNA sequence from clone RP23-38D3 on chromosome X, complete sequence Length = 220069 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 67696 ccttctgtctactcctcttg 67715
>emb|AL671871.4| Mouse DNA sequence from clone RP23-157M14 on chromosome 4, complete sequence Length = 199593 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 183111 ccttctgtctactcctcttg 183130
>emb|AL670838.3| Mouse DNA sequence from clone RP23-474L1 on chromosome 4, complete sequence Length = 114419 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ccttctgtctactcctcttg 177 |||||||||||||||||||| Sbjct: 83461 ccttctgtctactcctcttg 83480 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,760,641 Number of Sequences: 3902068 Number of extensions: 4760641 Number of successful extensions: 111704 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111228 Number of HSP's gapped (non-prelim): 475 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)