ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart15a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 30 gtggaacttcgcgccggacgaggccctcctcggcctgtcggcgctgtcggtgcgctccgt 89 ||||||||||| |||| ||| || || ||||| ||| ||||||||||||||||| ||| Sbjct: 54279 gtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgt 54220 Query: 90 gctgggcagcatcaaggccgggatgg 115 ||||||||| ||||||||||||||| Sbjct: 54219 gctgggcagggtcaaggccgggatgg 54194 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 136 gtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccggag 195 ||||||||| | || |||||||||||||||| ||||||||||||||| || | |||| Sbjct: 54149 gtgatcccgatgggacacggcgacccgtcggtgttcccgtgcttccggacgacggcggac 54090 Query: 196 gccgtggaagccgtctccgccgcgctccactccgggatgcacaactgctaccccaccggc 255 |||||||| ||||| | || ||||||| |||||| |||||||| |||| || || || Sbjct: 54089 gccgtggacgccgtggcggcggcgctccggtccggggagcacaactcctactcctcctgc 54030 Query: 256 gtcggcctggagcc 269 |||||||| ||||| Sbjct: 54029 gtcggcctcgagcc 54016
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 30 gtggaacttcgcgccggacgaggccctcctcggcctgtcggcgctgtcggtgcgctccgt 89 ||||||||||| |||| ||| || || ||||| ||| ||||||||||||||||| ||| Sbjct: 104195 gtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgt 104136 Query: 90 gctgggcagcatcaaggccgggatgg 115 ||||||||| ||||||||||||||| Sbjct: 104135 gctgggcagggtcaaggccgggatgg 104110 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 136 gtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccggag 195 ||||||||| | || |||||||||||||||| ||||||||||||||| || | |||| Sbjct: 104065 gtgatcccgatgggacacggcgacccgtcggtgttcccgtgcttccggacgacggcggac 104006 Query: 196 gccgtggaagccgtctccgccgcgctccactccgggatgcacaactgctaccccaccggc 255 |||||||| ||||| | || ||||||| |||||| |||||||| |||| || || || Sbjct: 104005 gccgtggacgccgtggcggcggcgctccggtccggggagcacaactcctactcctcctgc 103946 Query: 256 gtcggcctggagcc 269 |||||||| ||||| Sbjct: 103945 gtcggcctcgagcc 103932
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 30 gtggaacttcgcgccggacgaggccctcctcggcctgtcggcgctgtcggtgcgctccgt 89 ||||||||||| |||| ||| || || ||||| ||| ||||||||||||||||| ||| Sbjct: 19698700 gtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgt 19698641 Query: 90 gctgggcagcatcaaggccgggatgg 115 ||||||||| ||||||||||||||| Sbjct: 19698640 gctgggcagggtcaaggccgggatgg 19698615 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 136 gtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccggag 195 ||||||||| | || |||||||||||||||| ||||||||||||||| || | |||| Sbjct: 19698570 gtgatcccgatgggacacggcgacccgtcggtgttcccgtgcttccggacgacggcggac 19698511 Query: 196 gccgtggaagccgtctccgccgcgctccactccgggatgcacaactgctaccccaccggc 255 |||||||| ||||| | || ||||||| |||||| |||||||| |||| || || || Sbjct: 19698510 gccgtggacgccgtggcggcggcgctccggtccggggagcacaactcctactcctcctgc 19698451 Query: 256 gtcggcctggagcc 269 |||||||| ||||| Sbjct: 19698450 gtcggcctcgagcc 19698437
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 30 gtggaacttcgcgccggacgaggccctcctcggcctgtcggcgctgtcggtgcgctccgt 89 ||||||||||| |||| ||| || || ||||| ||| ||||||||||||||||| ||| Sbjct: 19984557 gtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgt 19984498 Query: 90 gctgggcagcatcaaggccgggatgg 115 ||||||||| ||||||||||||||| Sbjct: 19984497 gctgggcagggtcaaggccgggatgg 19984472 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 136 gtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccggag 195 ||||||||| | || |||||||||||||||| ||||||||||||||| || | |||| Sbjct: 19984427 gtgatcccgatgggacacggcgacccgtcggtgttcccgtgcttccggacgacggcggac 19984368 Query: 196 gccgtggaagccgtctccgccgcgctccactccgggatgcacaactgctaccccaccggc 255 |||||||| ||||| | || ||||||| |||||| |||||||| |||| || || || Sbjct: 19984367 gccgtggacgccgtggcggcggcgctccggtccggggagcacaactcctactcctcctgc 19984308 Query: 256 gtcggcctggagcc 269 |||||||| ||||| Sbjct: 19984307 gtcggcctcgagcc 19984294
>dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G08, full insert sequence Length = 812 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 30 gtggaacttcgcgccggacgaggccctcctcggcctgtcggcgctgtcggtgcgctccgt 89 ||||||||||| |||| ||| || || ||||| ||| ||||||||||||||||| ||| Sbjct: 93 gtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgt 152 Query: 90 gctgggcagcatcaaggccgggat 113 ||||||||| ||||||||||||| Sbjct: 153 gctgggcagggtcaaggccgggat 176
>gb|BT018809.1| Zea mays clone EL01N0530A04.d mRNA sequence Length = 1553 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Plus Query: 133 cccgtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccg 192 |||||| | ||||| | |||||| ||||| |||| ||||||| ||||||||| || | Sbjct: 325 cccgtgctgccgctggcgcacggggacccctcggtgttcccggccttccgcaccgccgcc 384 Query: 193 gaggccgtggaagccgtctccgccgcgctccactccgggatgcacaactgctaccccacc 252 ||||||| ||| ||||| |||||||||||| |||| | | ||||||||||||| || Sbjct: 385 gaggccgaggacgccgtggccgccgcgctccggaccggcaagttcaactgctaccccgcc 444 Query: 253 ggcgtcggcct 263 ||||||||||| Sbjct: 445 ggcgtcggcct 455
>gb|BT018624.1| Zea mays clone EL01N0502F06.d mRNA sequence Length = 1547 Score = 54.0 bits (27), Expect = 5e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 133 cccgtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccg 192 |||||| | ||||| | |||||| ||||| |||| ||||||| ||||||||| || | Sbjct: 279 cccgtgctgccgcttgcgcacggggacccctcggtgttcccggccttccgcaccgccgcc 338 Query: 193 gaggccgtggaagccgtctccgccgcgctccactccgggatgcacaactgctaccccacc 252 ||||||| ||| ||||| |||||||||||| | || | | ||||||||||||| || Sbjct: 339 gaggccgaggacgccgtggccgccgcgctccggacgggcaagttcaactgctaccccgcc 398 Query: 253 ggcgtcggcct 263 ||||||||||| Sbjct: 399 ggcgtcggcct 409
>dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nicotianamine aminotransferase, complete cds Length = 10966 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 447 ctacgaggcgcgcgccgcgttcaac 471 ||||||||||||||||||||||||| Sbjct: 1642 ctacgaggcgcgcgccgcgttcaac 1666 Score = 50.1 bits (25), Expect = 0.007 Identities = 91/113 (80%) Strand = Plus / Plus Query: 151 cacggcgacccgtcggcgttcccgtgcttccgcactgctccggaggccgtggaagccgtc 210 ||||| |||||||| | ||||||| ||||||||| || ||||||| ||| |||||| Sbjct: 1172 cacggggacccgtccgtgttcccggccttccgcacggccgtcgaggccgaggacgccgtc 1231 Query: 211 tccgccgcgctccactccgggatgcacaactgctaccccaccggcgtcggcct 263 |||||||||| | | |||| | ||||||||||||| ||||||||||||| Sbjct: 1232 gccgccgcgctgcgcaccggccagttcaactgctaccccgccggcgtcggcct 1284
>dbj|AB005788.1| Hordeum vulgare mRNA for nicotianamine aminotransferase B, complete cds Length = 1895 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 447 ctacgaggcgcgcgccgcgttcaac 471 ||||||||||||||||||||||||| Sbjct: 885 ctacgaggcgcgcgccgcgttcaac 909 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 237 caactgctaccccaccggcgtcggcct 263 ||||||||||||| ||||||||||||| Sbjct: 684 caactgctaccccgccggcgtcggcct 710
>ref|XM_465126.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 48.1 bits (24), Expect = 0.029 Identities = 81/100 (81%) Strand = Plus / Plus Query: 421 ctgctcccgcggcccgggtgcctgttctacgaggcgcgcgccgcgttcaacggcatggag 480 ||||||||||||||||| | || | | |||| | |||||||||| | | |||| | ||| Sbjct: 427 ctgctcccgcggcccggctacccgctgtacgcgtcgcgcgccgccctgagcggcctcgag 486 Query: 481 gcccgctacttccacctcctcccggacagcgactgggagg 520 |||| ||||| |||||||||| |||||||| ||||||| Sbjct: 487 ttccgccacttcgacctcctccccgacagcgagtgggagg 526 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 cacggcgacccgtcggcgttcccgtgcttccgc 183 ||||||||||| || |||||| ||||||||||| Sbjct: 169 cacggcgacccctccgcgttcgcgtgcttccgc 201
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.029 Identities = 81/100 (81%) Strand = Plus / Plus Query: 421 ctgctcccgcggcccgggtgcctgttctacgaggcgcgcgccgcgttcaacggcatggag 480 ||||||||||||||||| | || | | |||| | |||||||||| | | |||| | ||| Sbjct: 11733226 ctgctcccgcggcccggctacccgctgtacgcgtcgcgcgccgccctgagcggcctcgag 11733285 Query: 481 gcccgctacttccacctcctcccggacagcgactgggagg 520 |||| ||||| |||||||||| |||||||| ||||||| Sbjct: 11733286 ttccgccacttcgacctcctccccgacagcgagtgggagg 11733325 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 237 caactgctaccccaccggcgtcggcct 263 ||||||||||||| ||||||||||||| Sbjct: 12001281 caactgctaccccgccggcgtcggcct 12001255 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 142 ccgctcgggcacggcgacccgtcggcgttcccgtgcttccgc 183 |||||||| ||||||||||| | |||||| ||||||||||| Sbjct: 11716208 ccgctcggacacggcgaccccgccgcgttcgcgtgcttccgc 11716249 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 cacggcgacccgtcggcgttcccgtgcttccgc 183 ||||||||||| || |||||| ||||||||||| Sbjct: 11730339 cacggcgacccctccgcgttcgcgtgcttccgc 11730371
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 48.1 bits (24), Expect = 0.029 Identities = 81/100 (81%) Strand = Plus / Plus Query: 421 ctgctcccgcggcccgggtgcctgttctacgaggcgcgcgccgcgttcaacggcatggag 480 ||||||||||||||||| | || | | |||| | |||||||||| | | |||| | ||| Sbjct: 179515 ctgctcccgcggcccggctacccgctgtacgcgtcgcgcgccgccctgagcggcctcgag 179574 Query: 481 gcccgctacttccacctcctcccggacagcgactgggagg 520 |||| ||||| |||||||||| |||||||| ||||||| Sbjct: 179575 ttccgccacttcgacctcctccccgacagcgagtgggagg 179614 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 142 ccgctcgggcacggcgacccgtcggcgttcccgtgcttccgc 183 |||||||| ||||||||||| | |||||| ||||||||||| Sbjct: 162497 ccgctcggacacggcgaccccgccgcgttcgcgtgcttccgc 162538 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 cacggcgacccgtcggcgttcccgtgcttccgc 183 ||||||||||| || |||||| ||||||||||| Sbjct: 176628 cacggcgacccctccgcgttcgcgtgcttccgc 176660
>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0477B05 Length = 142166 Score = 48.1 bits (24), Expect = 0.029 Identities = 81/100 (81%) Strand = Plus / Plus Query: 421 ctgctcccgcggcccgggtgcctgttctacgaggcgcgcgccgcgttcaacggcatggag 480 ||||||||||||||||| | || | | |||| | |||||||||| | | |||| | ||| Sbjct: 41116 ctgctcccgcggcccggctacccgctgtacgcgtcgcgcgccgccctgagcggcctcgag 41175 Query: 481 gcccgctacttccacctcctcccggacagcgactgggagg 520 |||| ||||| |||||||||| |||||||| ||||||| Sbjct: 41176 ttccgccacttcgacctcctccccgacagcgagtgggagg 41215 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 142 ccgctcgggcacggcgacccgtcggcgttcccgtgcttccgc 183 |||||||| ||||||||||| | |||||| ||||||||||| Sbjct: 24098 ccgctcggacacggcgaccccgccgcgttcgcgtgcttccgc 24139 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 cacggcgacccgtcggcgttcccgtgcttccgc 183 ||||||||||| || |||||| ||||||||||| Sbjct: 38229 cacggcgacccctccgcgttcgcgtgcttccgc 38261
>ref|XM_465161.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 237 caactgctaccccaccggcgtcggcct 263 ||||||||||||| ||||||||||||| Sbjct: 291 caactgctaccccgccggcgtcggcct 317
>emb|X74291.1|SRGBS1G S.rochei bgs1 gene for beta-glucosidase Length = 1500 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 200 tggaagccgtctccgccgcgctc 222 ||||||||||||||||||||||| Sbjct: 1153 tggaagccgtctccgccgcgctc 1175
>dbj|AB206814.1| Oryza sativa (japonica cultivar-group) OsNAAT1 mRNA for nicotianamine aminotransferase, complete cds Length = 1423 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 237 caactgctaccccaccggcgtcggcct 263 ||||||||||||| ||||||||||||| Sbjct: 341 caactgctaccccgccggcgtcggcct 367
>dbj|AP005743.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0543C11 Length = 159075 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 237 caactgctaccccaccggcgtcggcct 263 ||||||||||||| ||||||||||||| Sbjct: 98559 caactgctaccccgccggcgtcggcct 98533
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 398 ccggcgcggccagcagcaacatc 420 ||||||||||||||||||||||| Sbjct: 2451109 ccggcgcggccagcagcaacatc 2451087
>ref|XM_465124.1| Oryza sativa (japonica cultivar-group), mRNA Length = 516 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Plus Query: 142 ccgctcgggcacggcgacccgtcggcgttcccgtgcttccgc 183 |||||||| ||||||||||| | |||||| ||||||||||| Sbjct: 151 ccgctcggacacggcgaccccgccgcgttcgcgtgcttccgc 192
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.45 Identities = 70/86 (81%) Strand = Plus / Plus Query: 133 cccgtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccg 192 ||||| ||||||||| | ||||||||||| || | | | | ||||||||||| || || Sbjct: 13678589 cccgtcatcccgctcagccacggcgacccttcctcctccgcctgcttccgcaccgcgccc 13678648 Query: 193 gaggccgtggaagccgtctccgccgc 218 ||||| | |||||||||| ||||||| Sbjct: 13678649 gaggcagaggaagccgtcgccgccgc 13678674
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 343 acgagcggctgctgccaggcgatcga 368 ||||||||||||||||||||| |||| Sbjct: 4833285 acgagcggctgctgccaggcgttcga 4833260
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09 Length = 156565 Score = 44.1 bits (22), Expect = 0.45 Identities = 70/86 (81%) Strand = Plus / Plus Query: 133 cccgtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccg 192 ||||| ||||||||| | ||||||||||| || | | | | ||||||||||| || || Sbjct: 85922 cccgtcatcccgctcagccacggcgacccttcctcctccgcctgcttccgcaccgcgccc 85981 Query: 193 gaggccgtggaagccgtctccgccgc 218 ||||| | |||||||||| ||||||| Sbjct: 85982 gaggcagaggaagccgtcgccgccgc 86007
>dbj|AK108576.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G02, full insert sequence Length = 1475 Score = 44.1 bits (22), Expect = 0.45 Identities = 70/86 (81%) Strand = Plus / Plus Query: 133 cccgtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccg 192 ||||| ||||||||| | ||||||||||| || | | | | ||||||||||| || || Sbjct: 200 cccgtcatcccgctcagccacggcgacccttcctcctccgcctgcttccgcaccgcgccc 259 Query: 193 gaggccgtggaagccgtctccgccgc 218 ||||| | |||||||||| ||||||| Sbjct: 260 gaggcagaggaagccgtcgccgccgc 285
>dbj|AK107186.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H09, full insert sequence Length = 1698 Score = 44.1 bits (22), Expect = 0.45 Identities = 70/86 (81%) Strand = Plus / Plus Query: 133 cccgtgatcccgctcgggcacggcgacccgtcggcgttcccgtgcttccgcactgctccg 192 ||||| ||||||||| | ||||||||||| || | | | | ||||||||||| || || Sbjct: 185 cccgtcatcccgctcagccacggcgacccttcctcctccgcctgcttccgcaccgcgccc 244 Query: 193 gaggccgtggaagccgtctccgccgc 218 ||||| | |||||||||| ||||||| Sbjct: 245 gaggcagaggaagccgtcgccgccgc 270
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 56 tcctcggcctgtcggcgctgtcggtg 81 |||||||||||||||||||| ||||| Sbjct: 816354 tcctcggcctgtcggcgctgacggtg 816329
>ref|XM_958182.1| Neurospora crassa OR74A hypothetical protein (NCU08403.1) partial mRNA Length = 1185 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 ctcgacctgccctacgagctc 321 ||||||||||||||||||||| Sbjct: 313 ctcgacctgccctacgagctc 333
>ref|XM_329448.1| Neurospora crassa OR74A hypothetical protein (NCU08403.1) partial mRNA Length = 1185 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 ctcgacctgccctacgagctc 321 ||||||||||||||||||||| Sbjct: 313 ctcgacctgccctacgagctc 333
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 ggaacttcgcgccggacgaggccct 56 |||||||||||||||| |||||||| Sbjct: 2079720 ggaacttcgcgccggaagaggccct 2079744
>gb|BT009504.1| Triticum aestivum clone wr1.pk0085.h9:fis, full insert mRNA sequence Length = 1035 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 ctacgaggcgcgcgccgcgttcaac 471 ||||||||||||||| ||||||||| Sbjct: 89 ctacgaggcgcgcgcggcgttcaac 113
>emb|X76083.1|BCPYRQP B.caldolyticus (DSM405) pyrR, pyrP and pyrB (partial) genes Length = 3140 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gatcgtctgctccgtgctcgc 389 ||||||||||||||||||||| Sbjct: 1993 gatcgtctgctccgtgctcgc 2013
>gb|AY841793.1| Aeromonas hydrophila strain AH-1 polar flagellar assembly protein (flhA) gene, complete cds Length = 2103 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 gtctgctccgtgctcgccggc 393 ||||||||||||||||||||| Sbjct: 1049 gtctgctccgtgctcgccggc 1029
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 ccgtgctcgccggccgtcccg 400 ||||||||||||||||||||| Sbjct: 125449 ccgtgctcgccggccgtcccg 125429
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 ggcacggcgacccgtcggcgt 169 ||||||||||||||||||||| Sbjct: 3434249 ggcacggcgacccgtcggcgt 3434229
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 cggcgcggcgctccatcgcgc 289 ||||||||||||||||||||| Sbjct: 4436038 cggcgcggcgctccatcgcgc 4436058
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 371 tcgtctgctccgtgctcgccggccg 395 ||||| ||||||||||||||||||| Sbjct: 2329953 tcgtcggctccgtgctcgccggccg 2329929 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 caccggcgtcggcctggagc 268 |||||||||||||||||||| Sbjct: 6685500 caccggcgtcggcctggagc 6685519 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tcggcgctgtcggtgcgctc 86 |||||||||||||||||||| Sbjct: 4662943 tcggcgctgtcggtgcgctc 4662962
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gatcgtctgctccgtgctcgc 389 ||||||||||||||||||||| Sbjct: 1166720 gatcgtctgctccgtgctcgc 1166740
>ref|XM_480126.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1937 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ggccgtggaagccgtctccgccgc 218 ||||||||||||| |||||||||| Sbjct: 244 ggccgtggaagccatctccgccgc 221
>ref|NM_183978.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2820 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 agccgtctccgccgcgctcc 223 |||||||||||||||||||| Sbjct: 1446 agccgtctccgccgcgctcc 1465
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 gctgctgccaggcgatcgagatcg 373 ||||||||| |||||||||||||| Sbjct: 332261 gctgctgcccggcgatcgagatcg 332284
>ref|XM_953298.1| Neurospora crassa OR74A hypothetical protein (NCU07805.1) partial mRNA Length = 1758 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gctaccccaccggcgtcggc 261 |||||||||||||||||||| Sbjct: 914 gctaccccaccggcgtcggc 933
>ref|XM_328510.1| Neurospora crassa OR74A hypothetical protein (NCU07805.1) partial mRNA Length = 1758 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gctaccccaccggcgtcggc 261 |||||||||||||||||||| Sbjct: 914 gctaccccaccggcgtcggc 933
>gb|AF394547.1| Oryza sativa alpha-expansin OsEXPA7 (EXPA7) gene, complete cds Length = 4985 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gccgccccgtgatcccgctc 147 |||||||||||||||||||| Sbjct: 3444 gccgccccgtgatcccgctc 3463
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 gccgccccgtgatcccgctc 147 |||||||||||||||||||| Sbjct: 34205751 gccgccccgtgatcccgctc 34205732 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tctgctccgtgctcgccggc 393 |||||||||||||||||||| Sbjct: 8301791 tctgctccgtgctcgccggc 8301810
>ref|XM_762600.1| Giardia lamblia ATCC 50803 ribosomal protein L35 (GLP_2_9191_9649) partial mRNA Length = 459 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 acgaggcgcgcgccgcgttc 468 |||||||||||||||||||| Sbjct: 287 acgaggcgcgcgccgcgttc 306
>ref|XM_762601.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_2_9880_9359) partial mRNA Length = 522 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 acgaggcgcgcgccgcgttc 468 |||||||||||||||||||| Sbjct: 404 acgaggcgcgcgccgcgttc 385
>gb|AY162971.1| Micromonospora chersina dynemicin enediyne iterative type I polyketide synthase gene locus, partial sequence Length = 6653 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gtgctgggcagcatcaaggc 107 |||||||||||||||||||| Sbjct: 1871 gtgctgggcagcatcaaggc 1890
>emb|X57326.1|TFMERRCG T.ferrooxidans merR and merC genes Length = 5001 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 cgcgcgccgcgttcaacggc 474 |||||||||||||||||||| Sbjct: 1902 cgcgcgccgcgttcaacggc 1883
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ggcagcatcaaggccgggat 113 |||||||||||||||||||| Sbjct: 2272192 ggcagcatcaaggccgggat 2272173
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tcctcggcctgtcggcgctg 75 |||||||||||||||||||| Sbjct: 1087131 tcctcggcctgtcggcgctg 1087150
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ggcctggagccggcgcggcg 278 |||||||||||||||||||| Sbjct: 2099132 ggcctggagccggcgcggcg 2099151
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccaggcgatcgagatcgtc 375 |||||||||||||||||||| Sbjct: 1033154 gccaggcgatcgagatcgtc 1033135
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 5228331 tacttccacctcctcccgga 5228312
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ggccgtggaagccgtctccgccgc 218 ||||||||||||| |||||||||| Sbjct: 2971375 ggccgtggaagccatctccgccgc 2971352
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 27221268 tacttccacctcctcccgga 27221249
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 gccgccccgtgatcccgctc 147 |||||||||||||||||||| Sbjct: 34296223 gccgccccgtgatcccgctc 34296204 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tctgctccgtgctcgccggc 393 |||||||||||||||||||| Sbjct: 8299626 tctgctccgtgctcgccggc 8299645
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 agccgtctccgccgcgctcc 223 |||||||||||||||||||| Sbjct: 13664348 agccgtctccgccgcgctcc 13664367
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tctgctccgtgctcgccggc 393 |||||||||||||||||||| Sbjct: 39047 tctgctccgtgctcgccggc 39066
>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146B04 Length = 145186 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 agccgtctccgccgcgctcc 223 |||||||||||||||||||| Sbjct: 2676 agccgtctccgccgcgctcc 2695
>gb|AF546156.1| Micromonospora chersinia UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10136 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gtgctgggcagcatcaaggc 107 |||||||||||||||||||| Sbjct: 5102 gtgctgggcagcatcaaggc 5121
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gccgccccgtgatcccgctc 147 |||||||||||||||||||| Sbjct: 129247 gccgccccgtgatcccgctc 129266
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 cgtggaagccgtctccgccgcgct 221 ||||||||||||| |||||||||| Sbjct: 3233368 cgtggaagccgtcgccgccgcgct 3233391
>dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151H08 Length = 123001 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 agccgtctccgccgcgctcc 223 |||||||||||||||||||| Sbjct: 69586 agccgtctccgccgcgctcc 69605
>dbj|AB088420.1| Pseudomonas resinovorans plasmid pCAR1, complete sequence Length = 199035 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cgctcgggcacggcgacccg 162 |||||||||||||||||||| Sbjct: 143015 cgctcgggcacggcgacccg 142996 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cgctcgggcacggcgacccg 162 |||||||||||||||||||| Sbjct: 57819 cgctcgggcacggcgacccg 57800
>dbj|AP006456.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0030A22 Length = 141096 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 13136 tacttccacctcctcccgga 13117
>dbj|AP006459.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084D17 Length = 143931 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 86487 tacttccacctcctcccgga 86468
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ggccgtggaagccgtctccgccgc 218 ||||||||||||| |||||||||| Sbjct: 144437 ggccgtggaagccatctccgccgc 144414
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ggccgtggaagccgtctccgccgc 218 ||||||||||||| |||||||||| Sbjct: 22098 ggccgtggaagccatctccgccgc 22075
>dbj|AK110865.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D12, full insert sequence Length = 1385 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tctgctccgtgctcgccggc 393 |||||||||||||||||||| Sbjct: 253 tctgctccgtgctcgccggc 272
>dbj|AK099848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109H24, full insert sequence Length = 1936 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ggccgtggaagccgtctccgccgc 218 ||||||||||||| |||||||||| Sbjct: 243 ggccgtggaagccatctccgccgc 220
>gb|AF069312.1|AF069312 Giardia intestinalis ribosomal protein L35 (RPL35) gene, complete cds Length = 687 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 acgaggcgcgcgccgcgttc 468 |||||||||||||||||||| Sbjct: 384 acgaggcgcgcgccgcgttc 403
>gb|AC110037.13| Mus musculus chromosome 5, clone RP23-257E17, complete sequence Length = 177428 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 tcctgctcccgcggcccggg 438 |||||||||||||||||||| Sbjct: 131228 tcctgctcccgcggcccggg 131209
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 5228313 tacttccacctcctcccgga 5228294
>emb|AL731879.5|CNS08C8K Oryza sativa chromosome 12, . BAC OSJNBb0016I13 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 150192 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 22571 tacttccacctcctcccgga 22552
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124959 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 tacttccacctcctcccgga 506 |||||||||||||||||||| Sbjct: 35267 tacttccacctcctcccgga 35286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,890,831 Number of Sequences: 3902068 Number of extensions: 2890831 Number of successful extensions: 68031 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65095 Number of HSP's gapped (non-prelim): 2931 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
