>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 225  PPIPT----LPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P +PT     P      PV+ KP S+  R  + ++ +  P  A+P A +   S  T +PI
Sbjct: 1503 PHVPTDPEPQPSTPTDQPVTPKPTSRATRGRARKSSVKTPEPAVPTAAEPQPSASTDQPI 1562

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -2

Query: 225  PPIPTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPIHRGM 46
            PP+P LP  T +SP +                   P    P A+ +STS R ++ +   M
Sbjct: 1947 PPLPPLPTGTGVSPTA----------------AAAPGATSPSASSSSTSTRHLQGVEFEM 1990

Query: 45   NRLGLLPRTPSP 10
             R  LL R PSP
Sbjct: 1991 -RPPLLRRAPSP 2001

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 207  PRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P  +   PV+ KP S+  R+ + R+ +  P   +P A +   S  T +P+
Sbjct: 1129 PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVPTAPELQPSTSTDQPV 1178



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 225  PPIPTLPR----ATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P +PT P      +   PV+ KP S+  R+ +  + +  P   +P A +   S  T +P+
Sbjct: 1283 PVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQISTSTDQPV 1342

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 207  PRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P  +   PV+ KP S+  R+ + R+ +  P + +P A +      T +P+
Sbjct: 1129 PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEQGVPTAPELQPCTSTDQPV 1178



 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 225  PPIPTLPR----ATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P +PT P      +   PV+ KP S+  R+ +  + +  P   +P A +   S  T +P+
Sbjct: 1283 PVVPTAPELQPSTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPV 1342

>HXD3_HUMAN (P31249) Homeobox protein Hox-D3 (Hox-4A)|
          Length = 416

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
 Frame = -2

Query: 225 PPIPTLPRATLISPVSEKPVSKPYRA-NSGRAVLLLPREAMPWA------TKNSTSCRT 70
           PP PTLP ++  +P    P  KP    N+  +   + ++  PW       +K   SC T
Sbjct: 105 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCAT 163

>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4|
            precursor (LTBP-4)
          Length = 1666

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 48   CPCGSAQSFYS*CCSLLPKA--SPRAGAIALPYRYWP 152
            CP   +  F + C  L P A   PR G   +PY Y P
Sbjct: 1432 CPAQDSDDFEALCNVLRPPAYGPPRPGGFGIPYEYGP 1468

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 207  PRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P  +   PV+ KP S+  R+ + R+ +  P   +P   +   S  T +P+
Sbjct: 1131 PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVPTVPELQPSTSTDQPV 1180



 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 207  PRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P  +   PV+ KP S+  R+ + R+ +  P   +P A +   S  T +P+
Sbjct: 1213 PSNSTDQPVTPKPTSEAIRSRTNRSSVKTPEAVVPTALELHPSNSTDQPV 1262



 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -2

Query: 225  PPIPTLPR----ATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P +PT P      +   PV+ KP S+  R  + R+ +  P    P A+       T +P+
Sbjct: 1695 PAVPTAPELHPTTSTDQPVTPKPTSRATRGRTNRSSVKTPEPVEPAASDLEPFTPTDQPV 1754



 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 207  PRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 58
            P  +   PV+ KP S+  R+ + R+ +  P   +P   +   S  T +P+
Sbjct: 1254 PSNSTDQPVTPKPTSEAIRSRTNRSSVKTPEPVVPTVPELQPSTSTDQPV 1303

>CCPA_ACEXY (P37697) Cellulose-complementing protein|
          Length = 353

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
 Frame = -2

Query: 225 PPIPTLPRATLISPVSEKPVSKPYRANSGRAVL---LLPREAMPWATKNSTSCRTIEPIH 55
           PP P  P A    P +  P S PY AN   A +     P    P A     + R +EP  
Sbjct: 135 PPAPVPPIAEQAPPAAPDPASVPY-ANVAAAPVPPDPAPVTPAPQARVTGPNTRMVEPFS 193

Query: 54  RGMNRLGLLPRTPS 13
           R   R      TPS
Sbjct: 194 RPQVRTVQEGATPS 207

>VTS1_EMENI (Q5BGC4) Protein vts1|
          Length = 611

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 222 PIPTLPRATLISPVSEKPVSKPYRANSGRA 133
           P+PT   AT+ +P  E P+  PY  N+  A
Sbjct: 311 PLPTSQTATIPAPEIEAPLLSPYNVNASWA 340

>SYC_PROMA (Q7VB63) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 499

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 126 LLPREAMPWATKNSTSCRTIEPIHRGMNRLGLLPRTPSPQ*T 1
           +L R +    T N  S R IE  HR M+ LG+L     P+ T
Sbjct: 75  ILARASKENCTMNEVSERNIEEFHRDMDALGILRPDRMPRAT 116

>LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 chain)|
          Length = 1609

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 42  CSCPCGSAQSFYS*CCSLLPKASPRAGAIALPYRYWPCMVCS 167
           C+CP G    F   C S   + +P  G       Y PC++C+
Sbjct: 690 CTCPVGYGGQFCEMCLSGYRRETPNLGP------YSPCVLCA 725


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,423,373
Number of Sequences: 219361
Number of extensions: 571006
Number of successful extensions: 1578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)