>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog|
          Length = 1878

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = -2

Query: 261 PQGHEQTRVAAQDTEPAVNTDGGEHKTTTHKGQGTANHTGAHECASLGLTNCVSKVARGG 82
           P  H +T    QD EPA     G  K ++  G+       +H    L LTN     A   
Sbjct: 657 PVRHNKTLQLMQDKEPA-----GRAKKSSKPGEQINKRLASHAFPELTLTNVSGFFANYS 711

Query: 81  HEESLQICCSPG 46
                Q C +PG
Sbjct: 712 SSSKPQECINPG 723

>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat|
           protein 7) (F-box protein FBL6/FBL7)
          Length = 491

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 402 CPRQCRNWRSRSRSPRLWDHLYLGQHLRAENVRIDRS 512
           C R CR W + +  PRLW  +     L  E + +DR+
Sbjct: 137 CARVCRRWYNLAWDPRLWRTI----RLTGETINVDRA 169

>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 389  PVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEPI 261
            PV+ KP S+  R  + ++ +  P  A+P A +   S  T +PI
Sbjct: 1520 PVTPKPTSRATRGRARKSSVKTPEPAVPTAAEPQPSASTDQPI 1562

>YKJ7_YEAST (P34245) Hypothetical 15.4 kDa protein in APE1/LAP4-CWP1 intergenic|
           region
          Length = 136

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +2

Query: 161 PCPLWVVVLCSPPSVFTAGSVSWAATLVCSCPCGSAQSFYS*CCSLLPKASPRAGAIALP 340
           P P  V+ + +P   ++     W     C   C S    +S CC  LPK  P     A  
Sbjct: 18  PVPAVVLGVMAPKRAYSTPFGPWPGPAECLWNCPSELRQFSSCCLPLPKLRPPRPTFASL 77

Query: 341 YR 346
           +R
Sbjct: 78  WR 79

>FLID_TREPA (O83842) Flagellar hook-associated protein 2 (HAP2) (Filament cap|
           protein) (Flagellar cap protein)
          Length = 722

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = -2

Query: 216 PAVNTDGGEHKTTTHKGQGTANHTG-------AHECASLGLTNCVSKVARGGHEESLQIC 58
           PAV+ D G++     + QGTA H G       A +  S G      K+A     ESLQ  
Sbjct: 329 PAVD-DKGDNPRAPGESQGTATHEGSGSSTDNADDTRSTGALAGSGKLAL----ESLQGH 383

Query: 57  CSPGDPLVLERPPPRWSSI 1
             P  PLVL +  P+  SI
Sbjct: 384 ALPLPPLVLTQNAPQMVSI 402


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,738,025
Number of Sequences: 219361
Number of extensions: 1722374
Number of successful extensions: 4849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4846
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)