ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart14c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 0.24
2emb|AJ307886.1|ZMA307886 Zea mays partial mRNA for pollen signal... 38 0.95
3gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein ... 36 3.8
4gb|U48404.1|ACU48404 Azotobacter chroococcum ORF1, ORF2, ORF3, O... 36 3.8

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      cgatggccacccagatcagc 36
               ||||||||||||||||||||
Sbjct: 1890784 cgatggccacccagatcagc 1890803



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>emb|AJ307886.1|ZMA307886 Zea mays partial mRNA for pollen signalling protein with adenylyl
          cyclase activity (psiP gene)
          Length = 3051

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 5  ccaccgcaccaacgatggc 23
          |||||||||||||||||||
Sbjct: 82 ccaccgcaccaacgatggc 64



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>gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein S3 mRNA, complete
           cds
          Length = 1004

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                             
Query: 4   tccaccgcaccaacgatggccacccagatcagca 37
           ||||||||  |||| ||||| |||||||||||||
Sbjct: 73  tccaccgccgcaaccatggcgacccagatcagca 106



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>gb|U48404.1|ACU48404 Azotobacter chroococcum ORF1, ORF2, ORF3, ORF4, and ORF5 H2-dependent
            respiration genes, complete cds
          Length = 2898

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 16   acgatggccacccagatcagca 37
            |||||| |||||||||||||||
Sbjct: 2489 acgatgcccacccagatcagca 2468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,795
Number of Sequences: 3902068
Number of extensions: 155795
Number of successful extensions: 38191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38161
Number of HSP's gapped (non-prelim): 30
length of query: 37
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 17
effective length of database: 17,155,003,908
effective search space: 291635066436
effective search space used: 291635066436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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