ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart14c02 |
|---|---|
| Clone Library Name | barley_pub |
>KLF10_RAT (O08876) Krueppel-like factor 10 (Transforming growth| factor-beta-inducible early growth response protein 1) (TGFB-inducible early growth response protein 1) (TIEG-1) (Zinc finger transcription factor homolog CPG20) Length = 480 Score = 34.3 bits (77), Expect = 0.28 Identities = 21/78 (26%), Positives = 33/78 (42%) Frame = -3 Query: 582 PPISCTSIIKNRAPIPKVTVWVKA*PVDSDIFCPKMLAKIKVIPQPRAATPRPPIQTLPR 403 PP C+ ++ +PK TV V+PQP +P+PP+ + P Sbjct: 298 PPAVCSPVLFMGTQVPKGTVMF-------------------VVPQPVVQSPKPPVVS-PN 337 Query: 402 ATLISPVSEKPVSKPYRA 349 T +SP++ P P A Sbjct: 338 GTRLSPIAPAPGFSPSAA 355
>KLF10_MOUSE (O89091) Krueppel-like factor 10 (Transforming growth| factor-beta-inducible early growth response protein 1) (TGFB-inducible early growth response protein 1) (TIEG-1) (GDNF-inducible factor) (Transcription factor GIF) (mGIF) Length = 479 Score = 34.3 bits (77), Expect = 0.28 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = -3 Query: 582 PPISCTSIIKNRAPIPKVTVWVKA*PVDSDIFCPKMLAKIKVIPQPRAATPRPPIQTLPR 403 PP C+ ++ +P+ TV + V+PQP +PRPP+ + P Sbjct: 297 PPAVCSPVLFMGTQVPEGTV-------------------VFVVPQPVVQSPRPPVVS-PS 336 Query: 402 ATLISPVSEKPVSKPYRA 349 T +SP++ P P A Sbjct: 337 GTRLSPIAPAPGFSPSAA 354
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 33.1 bits (74), Expect = 0.62 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -3 Query: 453 PQPRAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCR 274 P+P T P + P PV+ KP S+ R + ++ + P A+P A + S Sbjct: 1501 PEPHVPTDPEPQPSTPTD---QPVTPKPTSRATRGRARKSSVKTPEPAVPTAAEPQPSAS 1557 Query: 273 TIEPI 259 T +PI Sbjct: 1558 TDQPI 1562 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/69 (24%), Positives = 28/69 (40%) Frame = -3 Query: 456 IPQPRAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSC 277 + P P P P PV+ KP S+ R + R+ + P + P + ++ Sbjct: 1308 VKSPEQNVPTAPEHPQPSTPTDQPVTPKPTSRATRGRAHRSSVKTPAASEPLPSASTDQP 1367 Query: 276 RTIEPIHRG 250 T +P RG Sbjct: 1368 ITPKPTSRG 1376
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = -3 Query: 483 PKMLAKIKVIPQPRAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMP 304 PK+ + P AT P + P + PV+ KP S+ R+ + R+ + P +P Sbjct: 1105 PKIRTRKSSRMTPFPATSAAP-EPHPSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVP 1163 Query: 303 WATKNSTSCRTIEPI 259 A + S T +P+ Sbjct: 1164 TAPELQPSTSTDQPV 1178 Score = 30.8 bits (68), Expect = 3.1 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = -3 Query: 435 TPRPPIQTLPR----ATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTI 268 TP P + T P + PV+ KP S+ R+ + + + P +P A + S T Sbjct: 1280 TPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQISTSTD 1339 Query: 267 EPI 259 +P+ Sbjct: 1340 QPV 1342
>CCPA_ACEXY (P37697) Cellulose-complementing protein| Length = 353 Score = 32.0 bits (71), Expect = 1.4 Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 3/107 (2%) Frame = -3 Query: 564 SIIKNRAPIPKVTVWVKA*PVDSDIFCPKMLAKIKVIPQPRAATPRPPIQTLPRATLISP 385 +I+ AP P V V PV + + A+ V P A P PP P A P Sbjct: 92 AIVTETAPPPPVVVSA---PVTYEPPAAAVPAEPPVQEAPVQAAPVPPAPVPPIAEQAPP 148 Query: 384 VSEKPVSKPYRANSGRAVL---LLPREAMPWATKNSTSCRTIEPIHR 253 + P S PY AN A + P P A + R +EP R Sbjct: 149 AAPDPASVPY-ANVAAAPVPPDPAPVTPAPQARVTGPNTRMVEPFSR 194
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/75 (25%), Positives = 34/75 (45%) Frame = -3 Query: 483 PKMLAKIKVIPQPRAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMP 304 PK++ + P AT P + P + PV+ KP S+ R+ + R+ + P +P Sbjct: 1107 PKIITRKSSRMTPFPATSAAP-EPHPSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVP 1165 Query: 303 WATKNSTSCRTIEPI 259 + S T +P+ Sbjct: 1166 TVPELQPSTSTDQPV 1180 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/66 (25%), Positives = 31/66 (46%) Frame = -3 Query: 456 IPQPRAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSC 277 + P A P ++ P + PV+ KP S+ R+ + R+ + P +P A + S Sbjct: 1198 VKTPEAVVPTA-LELHPSNSTDQPVTPKPTSEAIRSRTNRSSVKTPEAVVPTALELHPSN 1256 Query: 276 RTIEPI 259 T +P+ Sbjct: 1257 STDQPV 1262 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/66 (24%), Positives = 30/66 (45%) Frame = -3 Query: 456 IPQPRAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSC 277 + P A P ++ P + PV+ KP S+ R+ + R+ + P +P + S Sbjct: 1239 VKTPEAVVPTA-LELHPSNSTDQPVTPKPTSEAIRSRTNRSSVKTPEPVVPTVPELQPST 1297 Query: 276 RTIEPI 259 T +P+ Sbjct: 1298 STDQPV 1303 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Frame = -3 Query: 435 TPRPPIQTLPR----ATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTI 268 TP P + T P + PV+ KP S+ R + R+ + P P A+ T Sbjct: 1692 TPEPAVPTAPELHPTTSTDQPVTPKPTSRATRGRTNRSSVKTPEPVEPAASDLEPFTPTD 1751 Query: 267 EPI 259 +P+ Sbjct: 1752 QPV 1754
>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor| Length = 3176 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -3 Query: 444 RAATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATK-NSTSCRTI 268 + AT RPP+ P AT PV+ KP + A + + V P P A K +T T Sbjct: 2926 KTATVRPPVAVKP-ATAAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATT 2984 Query: 267 EPI 259 +P+ Sbjct: 2985 KPV 2987
>PAN1_YEAST (P32521) Protein PAN1| Length = 1480 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/74 (25%), Positives = 30/74 (40%) Frame = -3 Query: 588 KMPPISCTSIIKNRAPIPKVTVWVKA*PVDSDIFCPKMLAKIKVIPQPRAATPRPPIQTL 409 + PP++ AP+P VT A PV + + I + P P + T PP+ Sbjct: 1308 RAPPVTA-------APLPSVTPVPPAVPVPQANTSNEKSSPIPIAPIPPSVTQEPPVPLA 1360 Query: 408 PRATLISPVSEKPV 367 P + E P+ Sbjct: 1361 PPLPAVDGFQEPPI 1374
>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog| Length = 1878 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/72 (29%), Positives = 27/72 (37%) Frame = -2 Query: 259 PQGHEQTRVAAQDTEPAVNTDGGEHKTTTHKGQGTANHTGAHECASLGLTNCVSKVARGG 80 P H +T QD EPA G K ++ G+ +H L LTN A Sbjct: 657 PVRHNKTLQLMQDKEPA-----GRAKKSSKPGEQINKRLASHAFPELTLTNVSGFFANYS 711 Query: 79 HEESLQICCSPG 44 Q C +PG Sbjct: 712 SSSKPQECINPG 723
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Frame = -3 Query: 453 PQPRAATPRPPIQTLPRATLISPVSEKP---VSKPYRANS 343 P P ATP+P + LP TL V P P+ NS Sbjct: 1237 PPPEGATPQPGVHNLPVPTLFGTVKPAPKTGTGSPFAGNS 1276
>TRPC_PYRAE (Q8ZYX2) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 249 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -3 Query: 474 LAKIKVIPQPRAAT-PRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWA 298 L ++K + R AT P PP ++LP I + E + Y+ S R V+ L + PWA Sbjct: 4 LTEVKRTVELRLATEPPPPARSLPLVDFIKSLGEFGIIAEYKRASPRGVIRL--DLPPWA 61
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -3 Query: 441 AATPRPPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTIEP 262 +A P P P + PV+ KP S+ R+ + R+ + P + +P A + T +P Sbjct: 1122 SAAPEPH----PSTSTAQPVTPKPTSQATRSRTNRSSVKTPEQGVPTAPELQPCTSTDQP 1177 Query: 261 I 259 + Sbjct: 1178 V 1178 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = -3 Query: 435 TPRPPIQTLPR----ATLISPVSEKPVSKPYRANSGRAVLLLPREAMPWATKNSTSCRTI 268 TP P + T P + PV+ KP S+ R+ + + + P +P A + S T Sbjct: 1280 TPEPVVPTAPELQPSTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTE 1339 Query: 267 EPI 259 +P+ Sbjct: 1340 QPV 1342
>FHAB_BORPE (P12255) Filamentous hemagglutinin| Length = 3590 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Frame = -3 Query: 582 PPISCTSI-------IKNRAPIPKVTVWVKA*PVDSDIFCPKM-LAKIKVIPQPRAATPR 427 PP+S ++ ++ P+P V + PV PK+ +AK++V+P+P+ T + Sbjct: 3312 PPVSVATVEVVPRPKVETAQPLPPRPVAAQVVPVTP----PKVEVAKVEVVPRPKVETAQ 3367 Query: 426 PPIQTLPRATLISPVSEKPVSKPYRANSGRAVLLLPREAMP 304 P LP +++ P +P A + P P Sbjct: 3368 P----LPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETTKP 3404
>KLF10_HUMAN (Q13118) Krueppel-like factor 10 (Transforming growth| factor-beta-inducible early growth response protein 1) (TGFB-inducible early growth response protein 1) (TIEG-1) (EGR-alpha) Length = 480 Score = 29.6 bits (65), Expect = 6.9 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%) Frame = -3 Query: 594 GMKMPPISCTSIIKNRAPIPKVTVWVKA*PVDSD-IFCPKML---------AKIKVIPQP 445 G+ P+ C ++ A P VT V + P CP ++ A + V+PQP Sbjct: 266 GVPPMPVIC-QMVPLPANNPVVTTVVPSTPPSQPPAVCPPVVFMGTQVPKGAVMFVVPQP 324 Query: 444 RAATPRPPIQTLPRATLISPVSEKPVSKPYRA 349 + +PP+ + P T +SP++ P P A Sbjct: 325 VVQSSKPPVVS-PNGTRLSPIAPAPGFSPSAA 355
>CYSD_MYCTU (P65670) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 309 Score = 29.3 bits (64), Expect = 9.0 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = +1 Query: 421 WRSRSRSPRLWDHLYLGQHLRAENVRIY 504 W +++ P LW+ LY G+H + E++R++ Sbjct: 165 WDPKAQRPELWN-LYNGRHHKGEHIRVF 191
>CYSD_MYCBO (P65671) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) Length = 309 Score = 29.3 bits (64), Expect = 9.0 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = +1 Query: 421 WRSRSRSPRLWDHLYLGQHLRAENVRIY 504 W +++ P LW+ LY G+H + E++R++ Sbjct: 165 WDPKAQRPELWN-LYNGRHHKGEHIRVF 191
>TONB_NEIMB (P57004) Protein tonB| Length = 280 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = -3 Query: 543 PIPKVTVWVKA*PVDSDIFCPKMLAKIKVIPQPRAATPRPPIQTLPRATLISPVSEKPVS 364 P+ K V KA D+DI PK K + P+P +P + P A + +EKPV Sbjct: 82 PVLKPVVTKKA---DADIQQPKEEPKPEEKPKPEE---KPKPEPKPEAKPVPKPAEKPVE 135 Query: 363 KP 358 KP Sbjct: 136 KP 137
>TONB_NEIMA (P57003) Protein tonB| Length = 280 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = -3 Query: 543 PIPKVTVWVKA*PVDSDIFCPKMLAKIKVIPQPRAATPRPPIQTLPRATLISPVSEKPVS 364 P+ K V KA D+DI PK K + P+P +P + P A + +EKPV Sbjct: 82 PVLKPVVTKKA---DADIQQPKEEPKPEEKPKPEE---KPKPEPKPEAKPVPKPAEKPVE 135 Query: 363 KP 358 KP Sbjct: 136 KP 137
>YKJ7_YEAST (P34245) Hypothetical 15.4 kDa protein in APE1/LAP4-CWP1 intergenic| region Length = 136 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/62 (27%), Positives = 24/62 (38%) Frame = +3 Query: 159 PCPLWVVVLCSPPSVFTAGSVSWAATLVCSCPCGSAQSFYS*CCSLLPKASPRAGAIALP 338 P P V+ + +P ++ W C C S +S CC LPK P A Sbjct: 18 PVPAVVLGVMAPKRAYSTPFGPWPGPAECLWNCPSELRQFSSCCLPLPKLRPPRPTFASL 77 Query: 339 YR 344 +R Sbjct: 78 WR 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,630,183 Number of Sequences: 219361 Number of extensions: 1795739 Number of successful extensions: 5814 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5801 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
