ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart14b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subu... 44 1e-04
2GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subu... 36 0.036
3GBLP_BRANA (Q39336) Guanine nucleotide-binding protein beta subu... 35 0.047
4GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subu... 34 0.14
5GBLP_ARATH (O24456) Guanine nucleotide-binding protein beta subu... 34 0.14
6GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subu... 33 0.23
7GBLP_SOYBN (Q39836) Guanine nucleotide-binding protein beta subu... 33 0.30

>GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subunit-like|
          protein (GPB-LR) (RWD)
          Length = 334

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 1  PIDNSPFIVSSSRDKSLLVW 60
          PIDNSPFIVSSSRDKSLLVW
Sbjct: 27 PIDNSPFIVSSSRDKSLLVW 46



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>GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subunit-like|
          protein
          Length = 326

 Score = 35.8 bits (81), Expect = 0.036
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 1  PIDNSPFIVSSSRDKSLLVW 60
          P+DNS  IV+SSRDKS++VW
Sbjct: 25 PVDNSDMIVTSSRDKSIIVW 44



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>GBLP_BRANA (Q39336) Guanine nucleotide-binding protein beta subunit-like|
          protein
          Length = 327

 Score = 35.4 bits (80), Expect = 0.047
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 1  PIDNSPFIVSSSRDKSLLVW 60
          PIDNS  IVS+SRDKS++VW
Sbjct: 24 PIDNSDTIVSASRDKSIIVW 43



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>GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subunit-like|
          protein
          Length = 325

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +1

Query: 1  PIDNSPFIVSSSRDKSLLVW 60
          PIDNS  IV++SRDKS+++W
Sbjct: 24 PIDNSDMIVTASRDKSIILW 43



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>GBLP_ARATH (O24456) Guanine nucleotide-binding protein beta subunit-like|
          protein (WD-40 repeat auxin-dependent protein ARCA)
          Length = 327

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +1

Query: 1  PIDNSPFIVSSSRDKSLLVW 60
          PIDN+  IVS+SRDKS+++W
Sbjct: 24 PIDNADIIVSASRDKSIILW 43



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>GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subunit-like|
          protein
          Length = 326

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 4  IDNSPFIVSSSRDKSLLVW 60
          +DNS  IV+SSRDKS++VW
Sbjct: 26 VDNSDMIVTSSRDKSIIVW 44



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>GBLP_SOYBN (Q39836) Guanine nucleotide-binding protein beta subunit-like|
          protein
          Length = 325

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +1

Query: 1  PIDNSPFIVSSSRDKSLLVW 60
          PIDNS  IV++SRD+S+++W
Sbjct: 24 PIDNSDMIVTASRDRSIILW 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,682,382
Number of Sequences: 219361
Number of extensions: 19009
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 80,573,946
effective HSP length: 0
effective length of database: 80,573,946
effective search space used: 1933774704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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