ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart14b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192099.1| Oryza sativa (japonica cultivar-group), predic... 90 7e-16
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-16
3dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-16
4dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-16
5dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-16
6dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-16
7dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-16
8dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-16
9dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RW... 90 7e-16
10ref|XM_475866.1| Oryza sativa (japonica cultivar-group), predic... 86 1e-14
11gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-14
12gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-14
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-14
14dbj|AK121567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
15dbj|AK065272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
16dbj|AK062179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-12
18gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare str... 78 3e-12
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-12
20ref|XM_481173.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-11
21gb|BT017990.1| Zea mays clone EL01N0526B03.c mRNA sequence 76 1e-11
22gb|BT016269.1| Zea mays clone Contig102 mRNA sequence 76 1e-11
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-11
24dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-11
25gb|AY103919.1| Zea mays PCO099246 mRNA sequence 76 1e-11
26gb|BT016705.1| Zea mays clone Contig538 mRNA sequence 60 6e-07
27ref|XM_675438.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 0.14
28gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 0.57
29gb|AF238380.3| Homo sapiens chromosome X multiple clones map p11... 38 2.2
30gb|BT014271.1| Lycopersicon esculentum clone 133498R, mRNA sequence 38 2.2
31ref|XM_688602.1| PREDICTED: Danio rerio similar to drebrin 1 iso... 38 2.2
32ref|XM_675672.1| Aspergillus nidulans FGSC A4 hypothetical prote... 36 8.8
33gb|AC127692.4| Mus musculus BAC clone RP23-49P3 from chromosome ... 36 8.8
34gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, comp... 36 8.8
35emb|BX842597.1| Neurospora crassa DNA linkage group II BAC clone... 36 8.8
36emb|BX842596.1| Neurospora crassa DNA linkage group II BAC clone... 36 8.8
37emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 36 8.8
38gb|AY094542.1| Pisum sativum G protein alpha subunit 1 gene, pro... 36 8.8
39emb|BX530412.8| Zebrafish DNA sequence from clone DKEY-42F6 in l... 36 8.8
40gb|AY625683.1| Triticum aestivum NAC domain transcription factor... 36 8.8
41emb|BX649324.3| Zebrafish DNA sequence from clone DKEY-85M15 in ... 36 8.8
42gb|AF040653.1| Caenorhabditis elegans cosmid K05F6, complete seq... 36 8.8 
>ref|NM_192099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1005

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
           |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 79  cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 138

            
Query: 61  g 61
           |
Sbjct: 139 g 139
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1        cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
                |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 28324233 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 28324292

                 
Query: 61       g 61
                |
Sbjct: 28324293 g 28324293
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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1      cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
              |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 158740 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 158799

               
Query: 61     g 61
              |
Sbjct: 158800 g 158800
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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                         
Query: 1     cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
             |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 39333 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 39392

              
Query: 61    g 61
             |
Sbjct: 39393 g 39393
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>dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037K24, full
           insert sequence
          Length = 1358

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
           |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 177 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 236

            
Query: 61  g 61
           |
Sbjct: 237 g 237
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>dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N15, full
           insert sequence
          Length = 1256

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
           |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 148 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 207

            
Query: 61  g 61
           |
Sbjct: 208 g 208
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>dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E12, full
           insert sequence
          Length = 1326

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
           |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 165 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 224

            
Query: 61  g 61
           |
Sbjct: 225 g 225
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>dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A02, full
           insert sequence
          Length = 1351

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
           |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 171 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 230

            
Query: 61  g 61
           |
Sbjct: 231 g 231
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>dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RWD mRNA for q group of
           receptor for activated C-kinase, complete cds
          Length = 1285

 Score = 89.7 bits (45), Expect = 7e-16
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtgg 60
           |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 105 cccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgg 164

            
Query: 61  g 61
           |
Sbjct: 165 g 165
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>ref|XM_475866.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 7   gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 82  gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 136
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                     
Query: 7      gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
              |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 116350 gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 116296
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
              complete sequence
          Length = 177861

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                     
Query: 7      gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
              |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 172778 gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 172724
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                       
Query: 7        gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
                |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 27241382 gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 27241328
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>dbj|AK121567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034P13, full
           insert sequence
          Length = 1385

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 7   gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 157 gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 211
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>dbj|AK065272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L07, full
           insert sequence
          Length = 1227

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 7   gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 150 gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 204
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>dbj|AK062179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D07, full
           insert sequence
          Length = 1412

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 7   gacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 159 gacaactcgcccttcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 213
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 55/59 (93%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                           
Query: 4        atcgacaactcccccttcatcgtctcctcttccc-gcgacaagtcgctgctcgtgtggg 61
                ||||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct: 10003470 atcgacaactcgcccttcatcgtctcctcctccctgcgacaagtcgctgctggtgtggg 10003528
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>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone
             OSJNBb0027B12, from chromosome 3, complete sequence
          Length = 127426

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 55/59 (93%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                        
Query: 4     atcgacaactcccccttcatcgtctcctcttccc-gcgacaagtcgctgctcgtgtggg 61
             ||||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct: 53386 atcgacaactcgcccttcatcgtctcctcctccctgcgacaagtcgctgctggtgtggg 53444
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-12
 Identities = 55/59 (93%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                           
Query: 4        atcgacaactcccccttcatcgtctcctcttccc-gcgacaagtcgctgctcgtgtggg 61
                ||||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct: 10001591 atcgacaactcgcccttcatcgtctcctcctccctgcgacaagtcgctgctggtgtggg 10001649
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>ref|XM_481173.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 552

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 4   atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           ||||||| ||| ||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 55  atcgacatctcgcccctcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 112
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>gb|BT017990.1| Zea mays clone EL01N0526B03.c mRNA sequence
          Length = 1281

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 4   atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           ||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 157 atcgacaactcgccgttcatcgtctcctcctcccgcgacaagtccctgctggtgtggg 214
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>gb|BT016269.1| Zea mays clone Contig102 mRNA sequence
          Length = 1254

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 4   atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           ||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 148 atcgacaactcgccgttcatcgtctcctcctcccgcgacaagtccctgctggtgtggg 205
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 4        atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
                ||||||| ||| ||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 10365542 atcgacatctcgcccctcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 10365485
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>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091D16
          Length = 174222

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 4     atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
             ||||||| ||| ||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 66500 atcgacatctcgcccctcatcgtctcctcctcccgcgacaagtcgctgctggtgtggg 66443
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>gb|AY103919.1| Zea mays PCO099246 mRNA sequence
          Length = 1461

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 4   atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           ||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 305 atcgacaactcgccgttcatcgtctcctcctcccgcgacaagtccctgctggtgtggg 362
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>gb|BT016705.1| Zea mays clone Contig538 mRNA sequence
          Length = 1265

 Score = 60.0 bits (30), Expect = 6e-07
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 4   atcgacaactcccccttcatcgtctcctcttcccgcgacaagtcgctgctcgtgtggg 61
           ||||||||||| || |||||||||||||| ||||| ||||||||  |||| |||||||
Sbjct: 148 atcgacaactcgcctttcatcgtctcctcctcccgggacaagtccgtgctggtgtggg 205
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>ref|XM_675438.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7261.2), mRNA
          Length = 3018

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   ccccttcatcgtctcctcttc 35
            |||||||||||||||||||||
Sbjct: 1038 ccccttcatcgtctcctcttc 1058
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 0.57
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     catcgtctcctcttcccgcg 40
              ||||||||||||||||||||
Sbjct: 664482 catcgtctcctcttcccgcg 664501
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>gb|AF238380.3| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 158698

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     cccccttcatcgtctcctc 32
              |||||||||||||||||||
Sbjct: 102200 cccccttcatcgtctcctc 102182
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>gb|BT014271.1| Lycopersicon esculentum clone 133498R, mRNA sequence
          Length = 1556

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 15  ccccttcatcgtctcctcttccc 37
           |||||||| ||||||||||||||
Sbjct: 205 ccccttcaccgtctcctcttccc 227
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>ref|XM_688602.1| PREDICTED: Danio rerio similar to drebrin 1 isoform b (LOC565325),
           mRNA
          Length = 828

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 17  ccttcatcgtctcctcttcccgc 39
           ||||| |||||||||||||||||
Sbjct: 694 ccttcctcgtctcctcttcccgc 672
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>ref|XM_675672.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7495.2), mRNA
          Length = 4062

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   tctcctcttcccgcgaca 43
            ||||||||||||||||||
Sbjct: 3076 tctcctcttcccgcgaca 3059
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>gb|AC127692.4| Mus musculus BAC clone RP23-49P3 from chromosome 5, complete sequence
          Length = 243940

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 9      caactcccccttcatcgtctcc 30
              |||||||||||||||| |||||
Sbjct: 232649 caactcccccttcatcctctcc 232628
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>gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, complete sequence
          Length = 228717

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 9      caactcccccttcatcgtctcc 30
              |||||||||||||||| |||||
Sbjct: 208252 caactcccccttcatcctctcc 208273
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>emb|BX842597.1| Neurospora crassa DNA linkage group II BAC clone B22K18
          Length = 75214

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 32    cttcccgcgacaagtcgc 49
             ||||||||||||||||||
Sbjct: 59655 cttcccgcgacaagtcgc 59638
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>emb|BX842596.1| Neurospora crassa DNA linkage group II BAC clone B10K17
          Length = 77292

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 32    cttcccgcgacaagtcgc 49
             ||||||||||||||||||
Sbjct: 58190 cttcccgcgacaagtcgc 58207
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 36    ccgcgacaagtcgctgctcgtg 57
             ||||| ||||||||||||||||
Sbjct: 51214 ccgcgccaagtcgctgctcgtg 51235
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>gb|AY094542.1| Pisum sativum G protein alpha subunit 1 gene, promoter and partial
           cds
          Length = 590

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 17  ccttcatcgtctcctctt 34
           ||||||||||||||||||
Sbjct: 398 ccttcatcgtctcctctt 415
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>emb|BX530412.8| Zebrafish DNA sequence from clone DKEY-42F6 in linkage group 4, complete
              sequence
          Length = 218203

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 18     cttcatcgtctcctcttc 35
              ||||||||||||||||||
Sbjct: 102687 cttcatcgtctcctcttc 102704
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>gb|AY625683.1| Triticum aestivum NAC domain transcription factor (NAC2) mRNA,
           complete cds
          Length = 1450

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 20  tcatcgtctcctcttccc 37
           ||||||||||||||||||
Sbjct: 664 tcatcgtctcctcttccc 647
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>emb|BX649324.3| Zebrafish DNA sequence from clone DKEY-85M15 in linkage group 4, complete
              sequence
          Length = 218137

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 18     cttcatcgtctcctcttc 35
              ||||||||||||||||||
Sbjct: 102430 cttcatcgtctcctcttc 102447
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>gb|AF040653.1| Caenorhabditis elegans cosmid K05F6, complete sequence
          Length = 36912

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    tcccccttcatcgtctcc 30
             ||||||||||||||||||
Sbjct: 12018 tcccccttcatcgtctcc 12001


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 301,012
Number of Sequences: 3902068
Number of extensions: 301012
Number of successful extensions: 18171
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18063
Number of HSP's gapped (non-prelim): 105
length of query: 61
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 40
effective length of database: 17,151,101,840
effective search space: 686044073600
effective search space used: 686044073600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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