ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart13h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Pro... 32 1.3
2ZN406_MOUSE (Q7TS63) Zinc finger protein 406 31 2.2
3ASTL_HUMAN (Q6HA08) Astacin-like metalloendopeptidase precursor ... 30 2.8
4FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote... 30 2.8
5CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21 30 3.7
6MYC2_SPEBE (Q64210) N-myc 2 proto-oncogene protein 30 4.8
7MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein 30 4.8
8DD31_DICDI (Q02465) Prespore protein Dd31 29 6.3
9ACDA1_METKA (Q8TXF7) Acetyl-CoA decarbonylase/synthase complex a... 29 8.2

>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene AF4)|
          Length = 1217

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 178  PPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPS 327
            PPR+ SS + S+T P AP++  VQA  R  +        A A  P  +PS
Sbjct: 903  PPRSASSTKSSSTDPPAPKHRKVQA--RGSEHKGSSGDAANAANPFPVPS 950



to top

>ZN406_MOUSE (Q7TS63) Zinc finger protein 406|
          Length = 1219

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +1

Query: 169 SAFPP---RARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHME 339
           SA PP    A S  QH  +A        +           P+SS  G QK   LP+    
Sbjct: 598 SAEPPAAAEATSDTQHRDSAQTQGEEVTLLLAKAKSAGPDPESSPGGRQKVGALPA---- 653

Query: 340 SVCENTTTADFKQSNFSNFLPSVRSGGWSDIG 435
           S  +++T      +  S+ LP+V  GG  D+G
Sbjct: 654 SESDSSTCLRANPTEASDLLPTVTDGG--DLG 683



to top

>ASTL_HUMAN (Q6HA08) Astacin-like metalloendopeptidase precursor (EC 3.4.-.-)|
           (Oocyte astacin) (Ovastacin)
          Length = 431

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +1

Query: 181 PRARSSHQHSTTAPVAPRNAGVQAGMRADDAGR----PDSSHAGAQKPAELP--SPH 333
           PR R SH HST    AP +  +Q  + A  A      P  S AG Q     P  SPH
Sbjct: 288 PRGRGSHAHSTGKSPAPASLSLQRLLEALSAESRSPDPSGSSAGGQPVPAGPGESPH 344



to top

>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 208 STTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPH 333
           S+ +P APR   V+A    +          G Q P+  PSPH
Sbjct: 458 SSESPAAPRTIKVEAAEEPEATRASGPGEPGPQAPSRTPSPH 499



to top

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +1

Query: 178 PPRARSSHQHSTTAPVA---PRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHMES 342
           P R  S+H  ST++      PR          D + R  SSHA  + P    + H+ S
Sbjct: 196 PARCSSTHSQSTSSSSPSSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVAS 253



to top

>MYC2_SPEBE (Q64210) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +1

Query: 172 AFPPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHMESV 345
           A   + +  H+ + T P       V     A  AGR  S  AGA  PAEL  P  E V
Sbjct: 130 AMSEKMQHGHEPAATGPATQ----VPGAGAASTAGRGHSGTAGAALPAELAHPAAECV 183



to top

>MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +1

Query: 172 AFPPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHMESV 345
           A   + +  H+ + T P       V     A  AGR  S  AGA  PAEL  P  E V
Sbjct: 130 AMSEKMQHGHEPAATGPATQ----VPGAGAASPAGRGHSGTAGAALPAELAHPAAECV 183



to top

>DD31_DICDI (Q02465) Prespore protein Dd31|
          Length = 269

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 295 AGAQKPAELPSPHMESVCENTTTADFKQSNFSNFLPSVRSGGWSDIGSRQYME 453
           A  Q  A++  PH+  V     TA  +Q+NF +  P +R     DI  R+Y +
Sbjct: 57  ANNQSAADITGPHV--VVPAPATAHPRQANFPSSYPMIRLNLEEDIAIREYRQ 107



to top

>ACDA1_METKA (Q8TXF7) Acetyl-CoA decarbonylase/synthase complex alpha subunit 1|
           (EC 1.2.99.2) (ACDS complex alpha subunit 1) (ACDS
           complex carbon monoxide dehydrogenase 1) (ACDS CODH 1)
          Length = 760

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -2

Query: 402 WKEIAEVTLLEIGSCGVLTNTLHMXXXXXXXXXRSGVARIGPPGVVRAHAGL 247
           +KEIA+  L  IG+CGVL  T+            +G  R G P +V   AGL
Sbjct: 586 FKEIADYILNRIGACGVLWGTM----SQKALAISTGFTRWGIP-IVYGPAGL 632


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.129    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,335,474
Number of Sequences: 219361
Number of extensions: 887348
Number of successful extensions: 3105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3103
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top