>ATG4_SCHPO (Q9P373) Probable cysteine protease atg4 (EC 3.4.22.-)|
           (Autophagy-related protein 4)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +2

Query: 158 YFLHLIAFFSYFAARTTAPSAEDDAEFHSRLIRREIQAVLVFLVLFTVKIVKEEHWETFI 337
           YF +L    ++FA  TT P++E+   FHS  +RR     L   ++F   I  EE W +F 
Sbjct: 227 YFFYLDPHCTHFAHTTTQPASEET--FHSATLRRVAIQDLDPCMIFGFLIRDEEEWHSFE 284

Query: 338 ADSLLYA 358
           A+   +A
Sbjct: 285 ANQKYFA 291

>NORA_STAAC (Q5HHX4) Quinolone resistance protein norA|
          Length = 388

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +2

Query: 278 VFLVLFTVKIVKEEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIV 433
           +F + F  K +K     TFIA SLLY+  +L+++ F  DYW  +  L+ F+V
Sbjct: 253 LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFANDYWSIM--LISFVV 302

>MPV17_CAEEL (Q7YWV6) Mpv17-like protein|
          Length = 181

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 391 NNKSNHQQEALCIEQ*ISDECFPVFLLHNLHREEHQEDEHRLDLPSDE 248
           NNKS    + LCI+Q     CF   +L NL   +HQ  E   DL  ++
Sbjct: 76  NNKSLLLVKKLCIDQLCFSPCFNAAILFNLRLLQHQSAEKSWDLLKED 123

>AGRB_STAIN (P61649) Accessory gene regulator protein B (EC 3.4.-.-)|
          Length = 188

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 125 PWLDVAISEPYYFLHLIAFFSYFAARTTAPSAEDDAEFHSRLIR-REIQAVLVFLVLFTV 301
           PWL V     + FL +++  S       AP+A        + ++  +I++++VF++L T+
Sbjct: 96  PWLIVQYDISFQFLLILSLLSALIVIKYAPAATKKRPIAPKKVKGLKIKSIIVFVLLMTI 155

Query: 302 KIVKEEHWETFIADSLLYAKGLLLVV 379
             +    +  F+   +L     LL +
Sbjct: 156 ACIVPPPYNRFVVYGVLLQSFTLLPI 181

>NORA_STAAW (P0A0J6) Quinolone resistance protein norA|
          Length = 388

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 278 VFLVLFTVKIVKEEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIV 433
           +F + F  K +K     TFIA SLLY+  +L+++ F   YW  +  L+ F+V
Sbjct: 253 LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFANGYWSIM--LISFVV 302

>NORA_STAAU (P0A0J7) Quinolone resistance protein norA|
          Length = 388

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 278 VFLVLFTVKIVKEEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIV 433
           +F + F  K +K     TFIA SLLY+  +L+++ F   YW  +  L+ F+V
Sbjct: 253 LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFANGYWSIM--LISFVV 302

>NORA_STAAS (Q6GBD5) Quinolone resistance protein norA|
          Length = 388

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 278 VFLVLFTVKIVKEEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIV 433
           +F + F  K +K     TFIA SLLY+  +L+++ F   YW  +  L+ F+V
Sbjct: 253 LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFANGYWSIM--LISFVV 302

>NORA_STAAN (P0A0J5) Quinolone resistance protein norA|
          Length = 388

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 278 VFLVLFTVKIVKEEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIV 433
           +F + F  K +K     TFIA SLLY+  +L+++ F   YW  +  L+ F+V
Sbjct: 253 LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFANGYWSIM--LISFVV 302

>NORA_STAAM (P0A0J4) Quinolone resistance protein norA|
          Length = 388

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 278 VFLVLFTVKIVKEEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIV 433
           +F + F  K +K     TFIA SLLY+  +L+++ F   YW  +  L+ F+V
Sbjct: 253 LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFANGYWSIM--LISFVV 302

>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3|
          Length = 266

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 238 PQPPHPTGDPGGARLPGALHGEDCEGGTLGN 330
           P PP P+GD GG   PG+  G+D + G  GN
Sbjct: 123 PGPPGPSGDAGGNGNPGS-PGQDGQPGAPGN 152

>Y184_METJA (Q57643) Hypothetical protein MJ0184|
          Length = 77

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 314 EEHWETFIADSLLYAKGLLLVVTFVIDYWLTVGYLLGFIVI 436
           + H + +     ++A G++L+  + + + L VGYL+G  +I
Sbjct: 10  DRHLKYYTTIVKVFANGIILITAYYLVFELPVGYLIGLYII 50

>LGT_BORPA (Q7W496) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 262

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 395 YWLTVGYLLGFIVIYAMAQQPPYDGTGHLSQLTPLQLESLL 517
           +W  + YL+GF ++YA+ ++     +GH + +T   LE L+
Sbjct: 20  HWYGLMYLIGFALVYALGRR--RITSGHTTSMTVRDLEDLI 58

>LGT_BORBR (Q7WFQ4) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 262

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 395 YWLTVGYLLGFIVIYAMAQQPPYDGTGHLSQLTPLQLESLL 517
           +W  + YL+GF ++YA+ ++     +GH + +T   LE L+
Sbjct: 20  HWYGLMYLIGFALVYALGRR--RITSGHTTSMTVRDLEDLI 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,387,191
Number of Sequences: 219361
Number of extensions: 1113527
Number of successful extensions: 4554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4521
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)