ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart13g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ... 243 2e-64
2PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog 230 2e-60
3PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ... 214 1e-55
4PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi... 214 2e-55
5PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)... 214 2e-55
6PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)... 207 2e-53
7PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog 204 1e-52
8PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog 192 6e-49
9PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ... 189 3e-48
10PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ... 184 1e-46
11PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B 178 7e-45
12PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog 154 1e-37
13PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso... 86 6e-17
14PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso... 86 6e-17
15PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso... 86 8e-17
16PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T... 85 1e-16
17PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso... 84 2e-16
18PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso... 83 4e-16
19PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso... 83 4e-16
20PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P... 83 5e-16
21PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro... 82 9e-16
22PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P... 82 9e-16
23PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P... 82 9e-16
24PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P... 82 9e-16
25PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4 80 3e-15
26PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4) 80 4e-15
27PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso... 79 1e-14
28PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso... 78 1e-14
29PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T... 75 1e-13
30PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso... 73 4e-13
31PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso... 72 7e-13
32PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso... 72 9e-13
33PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso... 72 1e-12
34PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso... 70 4e-12
35PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso... 67 3e-11
36PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1... 63 6e-10
37PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote... 62 7e-10
38PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote... 62 7e-10
39PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote... 62 7e-10
40PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A 61 2e-09
41PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-bindi... 59 8e-09
42PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-bin... 59 8e-09
43PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-bin... 58 2e-08
44PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-b... 58 2e-08
45PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-b... 58 2e-08
46PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog ... 55 9e-08
47PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog ... 55 1e-07
48PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog ... 54 3e-07
49PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ... 53 6e-07
50PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub... 52 1e-06
51PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-bin... 52 1e-06
52PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4 49 1e-05
53PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (P... 48 2e-05
54PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (T... 47 4e-05
55PSMR2_HALSA (Q9HRW6) Proteasome-activating nucleotidase 2 (Prote... 45 2e-04
56PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homo... 44 2e-04
57PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome ... 44 3e-04
58PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome ... 44 3e-04
59PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasom... 44 3e-04
60PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasom... 44 3e-04
61PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasom... 44 3e-04
62PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog 41 0.002
63PRS8_DROME (O18413) 26S protease regulatory subunit 8 41 0.002
64PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S prote... 41 0.002
65PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S prote... 41 0.002
66PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S prote... 41 0.002
67PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S prote... 41 0.002
68PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (C... 41 0.002
69PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Prote... 40 0.003
70PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein) 40 0.004
71PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 prot... 40 0.004
72PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 prot... 40 0.004
73PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 prot... 40 0.004
74PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-bindi... 39 0.007
75PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 pro... 37 0.025
76PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7 37 0.033
77CE290_HUMAN (O15078) Centrosomal protein Cep290 32 1.1
78HDA4_CAEEL (O17323) Histone deacetylase 4 (Histone deacetylase 7... 31 1.8
79LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase... 31 2.4
80MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1 31 2.4
81CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso... 31 2.4
82MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structura... 30 3.1
83CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-... 30 3.1
84CING_HUMAN (Q9P2M7) Cingulin 30 3.1
85LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.... 30 3.1
86LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.... 30 3.1
87FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1) 30 4.0
88RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase 30 5.3
89PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit) 30 5.3
90HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 29 6.9
91CE290_BOVIN (Q9TU23) Centrosomal protein Cep290 29 6.9
92SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like... 29 6.9
93NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2) 29 9.0
94NRBF2_PONPY (Q5R4C9) Nuclear receptor-binding factor 2 (NRBF-2) 29 9.0
95NRBF2_MOUSE (Q8VCQ3) Nuclear receptor-binding factor 2 (NRBF-2) 29 9.0
96NRBF2_HUMAN (Q96F24) Nuclear receptor-binding factor 2 (NRBF-2) ... 29 9.0
97GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked ... 29 9.0
98K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043 29 9.0
99MYOC_BOVIN (Q9XTA3) Myocilin precursor (Trabecular meshwork-indu... 29 9.0
100ATP5I_BOVIN (Q00361) ATP synthase e chain, mitochondrial (EC 3.6... 29 9.0 
>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score =  243 bits (620), Expect = 2e-64
 Identities = 122/135 (90%), Positives = 130/135 (96%)
 Frame = +2

Query: 119 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 298
           D++DLYGRLKSL+R +EF +IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM
Sbjct: 26  DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           VD NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL+
Sbjct: 86  VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145

Query: 479 SSEKPNVLYSDIGGC 523
            SEKP+V Y+DIGGC
Sbjct: 146 QSEKPDVSYNDIGGC 160
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>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score =  230 bits (586), Expect = 2e-60
 Identities = 116/136 (85%), Positives = 125/136 (91%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 295
           + +DDLY RLKSLQR +EF+EIQEEYVKDE KNL+RE LRAQEEVKRIQSVPLVIGQFME
Sbjct: 30  DGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFME 89

Query: 296 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 475
           M+D NN IVGSTTGSNYYVRILSTINRELLKPSASV L RHSNALVDVLPPEADSSISLL
Sbjct: 90  MIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLL 149

Query: 476 ASSEKPNVLYSDIGGC 523
           + SEKP+V Y+DIGGC
Sbjct: 150 SQSEKPDVTYNDIGGC 165
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>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score =  214 bits (545), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 121/134 (90%)
 Frame = +2

Query: 119 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 298
           + +DLY + K LQR +EF+E+QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E 
Sbjct: 33  ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 92

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           VD N GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L 
Sbjct: 93  VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 152

Query: 479 SSEKPNVLYSDIGG 520
           + EKP+V YSDIGG
Sbjct: 153 ADEKPDVQYSDIGG 166
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>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score =  214 bits (544), Expect = 2e-55
 Identities = 104/135 (77%), Positives = 121/135 (89%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 295
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 296 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 475
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMML 154

Query: 476 ASSEKPNVLYSDIGG 520
            S +KP+V+Y+DIGG
Sbjct: 155 TSDQKPDVMYADIGG 169
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>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score =  214 bits (544), Expect = 2e-55
 Identities = 104/135 (77%), Positives = 121/135 (89%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 295
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 296 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 475
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMML 154

Query: 476 ASSEKPNVLYSDIGG 520
            S +KP+V+Y+DIGG
Sbjct: 155 TSDQKPDVMYADIGG 169
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>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score =  207 bits (526), Expect = 2e-53
 Identities = 100/135 (74%), Positives = 119/135 (88%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 295
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 296 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 475
            VD N  IV STTGSNYYVR++STI+RELLKP+ASVALH+HSNALVDVLPP ADSSI +L
Sbjct: 95  AVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMML 154

Query: 476 ASSEKPNVLYSDIGG 520
            S +KP+V+Y+DIGG
Sbjct: 155 TSDQKPDVMYADIGG 169
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>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score =  204 bits (519), Expect = 1e-52
 Identities = 97/134 (72%), Positives = 119/134 (88%)
 Frame = +2

Query: 119 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 298
           D  D Y  LK LQRH+E++++QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME 
Sbjct: 37  DGSDEYATLKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEA 96

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D N GIV S+TGSNY VRILST++RE LKPS+SVALHRHSNALVD+LPPEADSSI++L 
Sbjct: 97  IDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLG 156

Query: 479 SSEKPNVLYSDIGG 520
            +EKP+V Y+D+GG
Sbjct: 157 ENEKPDVTYADVGG 170
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>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score =  192 bits (487), Expect = 6e-49
 Identities = 93/134 (69%), Positives = 117/134 (87%)
 Frame = +2

Query: 119 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 298
           ++ DLY R K+L+R +E +++QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E 
Sbjct: 5   EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D N  IVGSTTGSNY VRILST++RELLKPSASVAL RHSNALVD+LPPEADSSIS+L 
Sbjct: 65  IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124

Query: 479 SSEKPNVLYSDIGG 520
             E+P+V Y+D+GG
Sbjct: 125 PDERPDVSYADVGG 138
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>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score =  189 bits (481), Expect = 3e-48
 Identities = 90/133 (67%), Positives = 115/133 (86%)
 Frame = +2

Query: 122 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 301
           + D+Y +LK L++  E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +
Sbjct: 44  NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPI 103

Query: 302 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 481
           D N GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++  
Sbjct: 104 DQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGE 163

Query: 482 SEKPNVLYSDIGG 520
           +EKP+V Y+D+GG
Sbjct: 164 NEKPDVTYADVGG 176
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>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score =  184 bits (467), Expect = 1e-46
 Identities = 95/131 (72%), Positives = 109/131 (83%)
 Frame = +2

Query: 128 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 307
           DLY ++KSL+  ++F  IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD 
Sbjct: 24  DLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDS 83

Query: 308 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 487
           N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL + E
Sbjct: 84  NTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADE 143

Query: 488 KPNVLYSDIGG 520
           KP+  YSDIGG
Sbjct: 144 KPSESYSDIGG 154
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>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score =  178 bits (452), Expect = 7e-45
 Identities = 87/131 (66%), Positives = 109/131 (83%)
 Frame = +2

Query: 128 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 307
           D Y +L +L+R +  +++ E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VD 
Sbjct: 35  DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQ 94

Query: 308 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 487
           N+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALVDVLPPEADSSI +L   E
Sbjct: 95  NHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDE 154

Query: 488 KPNVLYSDIGG 520
           KP++ Y DIGG
Sbjct: 155 KPDISYGDIGG 165
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>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score =  154 bits (389), Expect = 1e-37
 Identities = 72/130 (55%), Positives = 102/130 (78%)
 Frame = +2

Query: 131 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 310
           L+ R K ++R +  +EI+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +
Sbjct: 9   LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSS 68

Query: 311 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 490
             IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++  SEK
Sbjct: 69  TAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEK 128

Query: 491 PNVLYSDIGG 520
           P+V Y D+GG
Sbjct: 129 PSVTYGDVGG 138
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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 46/129 (35%), Positives = 77/129 (59%)
 Frame = +2

Query: 134 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 313
           Y +L+ L R +E    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++   
Sbjct: 20  YYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGR 76

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            +V S+TG  + V     IN E LKP A VAL++ + A+V+VLP   D  +      EKP
Sbjct: 77  VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKP 136

Query: 494 NVLYSDIGG 520
            V Y DIGG
Sbjct: 137 EVSYEDIGG 145
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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 42/127 (33%), Positives = 78/127 (61%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 319
           R K+L++ +E    ++  +++E +  +  + + + +++R++  PL++G   E++D    I
Sbjct: 57  RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVI 116

Query: 320 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNV 499
           V S+TG  +   +  T++R  L+P A+VAL++ S A+VDVLP E DS +  +   E P+V
Sbjct: 117 VKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDV 176

Query: 500 LYSDIGG 520
            Y DIGG
Sbjct: 177 SYDDIGG 183
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>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 45/123 (36%), Positives = 73/123 (59%)
 Frame = +2

Query: 152 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 331
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV + 
Sbjct: 20  LKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79

Query: 332 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSD 511
            G  + VRI   I R+ LKP A VAL + + A+V++LP E D S+      E+P V Y+D
Sbjct: 80  NGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYND 139

Query: 512 IGG 520
           IGG
Sbjct: 140 IGG 142
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>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 44/129 (34%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 313
           +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++
Sbjct: 58  KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDH 117

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++   + P
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSP 177

Query: 494 NVLYSDIGG 520
              YSDIGG
Sbjct: 178 TESYSDIGG 186
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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 42/123 (34%), Positives = 74/123 (60%)
 Frame = +2

Query: 152 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 331
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 81

Query: 332 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSD 511
            G  + VRI   I R+ L+P A VAL + + A++++LP   D ++      E+PNV Y+D
Sbjct: 82  NGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYND 141

Query: 512 IGG 520
           IGG
Sbjct: 142 IGG 144
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>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 42/123 (34%), Positives = 74/123 (60%)
 Frame = +2

Query: 152 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 331
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81

Query: 332 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSD 511
            G  + VRI   I+R+ L+P   VAL + + A+V++LP   D ++      E+PNV Y+D
Sbjct: 82  NGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYND 141

Query: 512 IGG 520
           IGG
Sbjct: 142 IGG 144
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>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
 Frame = +2

Query: 116 EDDDDLYGRLKS----LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 283
           ED+   +G        L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G
Sbjct: 3   EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAG 62

Query: 284 QFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSS 463
             +E++D +  IV +  G  + VRI   I++  L+P   VAL + + A++++LP   D +
Sbjct: 63  SVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPA 122

Query: 464 ISLLASSEKPNVLYSDIGG 520
           +      E+PNV Y+DIGG
Sbjct: 123 VLGFEVVERPNVTYNDIGG 141
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>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 45/130 (34%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDGN 310
           RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D +
Sbjct: 68  RLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126

Query: 311 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 490
           + IV ST G  YYV I+S +++++L+P  SV LH  + ++V +L  + D  I+++   + 
Sbjct: 127 HAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185

Query: 491 PNVLYSDIGG 520
           P   Y+DIGG
Sbjct: 186 PTESYADIGG 195
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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 38/129 (29%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 313
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 494 NVLYSDIGG 520
              Y+DIGG
Sbjct: 181 QETYADIGG 189
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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 38/129 (29%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 313
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 494 NVLYSDIGG 520
              Y+DIGG
Sbjct: 181 QETYADIGG 189
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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 38/129 (29%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 313
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 494 NVLYSDIGG 520
              Y+DIGG
Sbjct: 181 QETYADIGG 189
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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 38/129 (29%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 313
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAP 180

Query: 494 NVLYSDIGG 520
              Y+DIGG
Sbjct: 181 QETYADIGG 189
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>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 40/132 (30%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
 Frame = +2

Query: 140 RLKSL--QRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVD 304
           RLK L  +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D
Sbjct: 62  RLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIID 120

Query: 305 GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASS 484
             + IV +  GS +YV I+S +++E L+P  SV L+  ++A++ VL  + D  +S++   
Sbjct: 121 DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLE 180

Query: 485 EKPNVLYSDIGG 520
           + P   Y+D+GG
Sbjct: 181 KAPQETYADVGG 192
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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 39/130 (30%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDGN 310
           +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N
Sbjct: 60  KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118

Query: 311 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 490
           + IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++   + 
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKA 178

Query: 491 PNVLYSDIGG 520
           P   Y+DIGG
Sbjct: 179 PQETYADIGG 188
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>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 42/125 (33%), Positives = 75/125 (60%)
 Frame = +2

Query: 146 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVG 325
           ++L   +  +E  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V 
Sbjct: 31  RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVK 90

Query: 326 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLY 505
           STTG ++ +     I+R+ L+P A VAL++ + ++VDVLP E D  ++ +   EKP+V Y
Sbjct: 91  STTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSY 150

Query: 506 SDIGG 520
             IGG
Sbjct: 151 EQIGG 155
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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 41/122 (33%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
 Frame = +2

Query: 164 MEFVEIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 334
           ++ V + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++
Sbjct: 17  VQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSS 76

Query: 335 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDI 514
           G N  V I S I+++L+KP  SVAL++  + +++VLP + D  +  +   E+PNV YS+I
Sbjct: 77  GPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEI 136

Query: 515 GG 520
           GG
Sbjct: 137 GG 138
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>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDGNN 313
           RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D ++
Sbjct: 69  RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESH 128

Query: 314 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 493
            IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P
Sbjct: 129 AIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAP 188

Query: 494 NVLYSDIGG 520
              Y+DIGG
Sbjct: 189 LESYADIGG 197
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>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 35/106 (33%), Positives = 61/106 (57%)
 Frame = +2

Query: 203 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL 382
           E+ +L++EL   + E+ ++ S P +    +E++D N  +V S+TG N  V + + ++   
Sbjct: 38  EKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARS 97

Query: 383 LKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
           LKP A VAL+   + +VDVLP   D  +  +   E+P V + D+GG
Sbjct: 98  LKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGG 143
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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 36/130 (27%), Positives = 73/130 (56%)
 Frame = +2

Query: 131 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 310
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 311 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 490
             IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E 
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIES 153

Query: 491 PNVLYSDIGG 520
             V Y  IGG
Sbjct: 154 VEVDYDQIGG 163
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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 36/130 (27%), Positives = 73/130 (56%)
 Frame = +2

Query: 131 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 310
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 311 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 490
             IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E 
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIES 153

Query: 491 PNVLYSDIGG 520
             V Y  IGG
Sbjct: 154 IEVDYDQIGG 163
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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
 Frame = +2

Query: 143 LKSLQRHMEFVEIQEEYVKDEQKN---------LKRELLRAQEEVKRIQSVPLVIGQFME 295
           LK  +   +  E++ + ++ E KN         +K+E    + E+ +++  PL++G  ++
Sbjct: 18  LKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILD 77

Query: 296 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 475
            V+    +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +
Sbjct: 78  KVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAM 137

Query: 476 ASSEKPNVLYSDIGG 520
              EKP++ + DIGG
Sbjct: 138 EIEEKPDISFEDIGG 152
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>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 37/127 (29%), Positives = 69/127 (54%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 319
           R+  L+  +  +E++++ ++ E   L +E    + E+ R++  PL++G  ++ V     +
Sbjct: 48  RIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVV 107

Query: 320 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNV 499
           V S+TG ++ V +   +N + L P   V L++ +  +VDVLP   D     +   E+PNV
Sbjct: 108 VKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNV 167

Query: 500 LYSDIGG 520
            Y DIGG
Sbjct: 168 RYEDIGG 174
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>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
 Frame = +2

Query: 119 DDDDLYGRLKSLQRHMEFVEIQEEYVKD---EQKNLKRELLRAQEEVKRIQSVPLVIGQF 289
           D+ D Y R K        V + EE ++    E + L+++L   + E++++ + P +    
Sbjct: 3   DELDSY-RAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIV 61

Query: 290 MEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 469
           ++++     IV S++G N  V + S I+ + LKP + VAL +  + +V+VLP   D+ + 
Sbjct: 62  LDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVK 121

Query: 470 LLASSEKPNVLYSDIGG 520
                EKPNV YSDIGG
Sbjct: 122 SFEVIEKPNVHYSDIGG 138
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>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
 Frame = +2

Query: 122 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFM 292
           +D+    L S +R +      E+ +KD +K    + ++  +++ ++K +QSV  ++G+ +
Sbjct: 19  EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query: 293 EMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISL 472
           + +     IV +T G  Y V    +IN+E LK    V+L   +  ++  LP E D  +  
Sbjct: 79  KQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYK 138

Query: 473 LASSEKPNVLYSDIGG 520
           ++  +  N+ YSD+GG
Sbjct: 139 MSHEDPGNISYSDVGG 154
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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 36/133 (27%), Positives = 70/133 (52%)
 Frame = +2

Query: 122 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 301
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 302 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 481
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  ++ 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query: 482 SEKPNVLYSDIGG 520
            +  NV YS+IGG
Sbjct: 125 EDPGNVSYSEIGG 137
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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 36/133 (27%), Positives = 70/133 (52%)
 Frame = +2

Query: 122 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 301
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 302 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 481
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  ++ 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query: 482 SEKPNVLYSDIGG 520
            +  NV YS+IGG
Sbjct: 125 EDPGNVSYSEIGG 137
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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 36/133 (27%), Positives = 70/133 (52%)
 Frame = +2

Query: 122 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 301
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 302 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 481
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  ++ 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query: 482 SEKPNVLYSDIGG 520
            +  NV YS+IGG
Sbjct: 125 EDPGNVSYSEIGG 137
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>PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A|
          Length = 438

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           D+L  R + L+  ++ ++ + + +  E+  +  ++   QE++   + +P ++G  +E++D
Sbjct: 37  DELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILD 96

Query: 305 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 421
                                G + ++ ++T    ++ ++  +  E L P   + +++ S
Sbjct: 97  MQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDS 156

Query: 422 NALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
             ++D LP E DS +  +   EKP   YSDIGG
Sbjct: 157 YLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGG 189
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>PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding
           protein homolog SATA)
          Length = 439

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 32/152 (21%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +++  R + L   ++ ++ +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct: 39  EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 98

Query: 305 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 424
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 99  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 158

Query: 425 ALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
            +++ LP E DS +  +   E+P   YSDIGG
Sbjct: 159 LILETLPTEYDSRVKAMEVDERPTEQYSDIGG 190
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>PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1) (Proteasome subunit P50)
          Length = 439

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 32/152 (21%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +++  R + L   ++ ++ +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct: 39  EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 98

Query: 305 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 424
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 99  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 158

Query: 425 ALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
            +++ LP E DS +  +   E+P   YSDIGG
Sbjct: 159 LILETLPTEYDSRVKAMEVDERPTEQYSDIGG 190
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>PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1)
          Length = 442

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +++  R + L   ++ ++ +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct: 42  EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 101

Query: 305 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 424
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 102 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 161

Query: 425 ALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
            +++ LP + DS +  +   E+P   YSDIGG
Sbjct: 162 LILETLPTDYDSRVKAMEVDERPTEQYSDIGG 193
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>PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-binding protein|
           10) (TBP-10)
          Length = 404

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +++  R + L   ++ ++ +   V  E + ++ ++    E++K  +++P ++   +E++D
Sbjct: 4   EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLD 63

Query: 305 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 424
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 64  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 123

Query: 425 ALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
            +++ LP E DS +  +   E+P   YSDIGG
Sbjct: 124 LILETLPTEYDSRVKAMEVDERPTEQYSDIGG 155
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>PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-binding protein|
           6) (TBP-6)
          Length = 405

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +++  R + L   ++ ++ +   V  E + ++ ++    E++K  +++P ++   +E++D
Sbjct: 23  EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLD 82

Query: 305 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 424
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 83  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 142

Query: 425 ALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
            +++ LP E DS +  +   E+P   YSDIGG
Sbjct: 143 LILETLPTEYDSRVKAMEVDERPTEQYSDIGG 174
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>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 429

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 29/163 (17%)
 Frame = +2

Query: 119 DDDDLYGR-LKSLQRHMEFVEIQEEYVKDEQK-------NLKRELLRAQEEVKRIQSVPL 274
           DDD L     +++ R    ++ +   +KDE +       + K ++   QE++K  + +P 
Sbjct: 18  DDDQLASMSTENIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPY 77

Query: 275 VIGQFMEMVD---------------------GNNGIVGSTTGSNYYVRILSTINRELLKP 391
           ++G  +E+++                     G   ++ ++T    ++ ++  ++ E LKP
Sbjct: 78  LVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKP 137

Query: 392 SASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
              V +++ S  ++D LP E DS +  +   EKP   Y+DIGG
Sbjct: 138 GDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGG 180
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>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 419

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 31/153 (20%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           DD+    + L   +  ++ + +    + +++K ++   QE++K  + +P ++G  +E+++
Sbjct: 18  DDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILE 77

Query: 305 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 421
                                G   ++ ++T    ++ ++  ++ + LKP   V +++ S
Sbjct: 78  MSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDS 137

Query: 422 NALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
             ++D LP E DS +  +   EKP   Y+DIGG
Sbjct: 138 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGG 170
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>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 424

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/153 (20%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +D+    + L+  +  ++   +    E  + K ++   QE++K  + +P ++G  +E+++
Sbjct: 23  EDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILE 82

Query: 305 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 421
                                G   ++ ++T    ++ ++  ++ + LKP   V +++ S
Sbjct: 83  MNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDS 142

Query: 422 NALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
             ++D LP E DS +  +   EKP   Y+DIGG
Sbjct: 143 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGG 175
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>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/153 (20%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 304
           +D+    + L   +  ++ + +    E  + K ++   QE++K  + +P ++G  +E+++
Sbjct: 22  EDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILE 81

Query: 305 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 421
                                G   ++ ++T    ++ ++  ++ + LKP   V +++ S
Sbjct: 82  MNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDS 141

Query: 422 NALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
             ++D LP E DS +  +   EKP   Y DIGG
Sbjct: 142 YLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGG 174
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>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 26/104 (25%), Positives = 57/104 (54%)
 Frame = +2

Query: 209 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 388
           ++L++   + + ++K +QS+  +IG+ M+ +     IV +++G  Y V + ++++R  LK
Sbjct: 82  RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLK 141

Query: 389 PSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
               V L   +  ++ +LP E D  +  + S E+  + +  IGG
Sbjct: 142 KGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGG 185
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>PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-binding protein|
           homolog 1) (TBP-1)
          Length = 434

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
 Frame = +2

Query: 128 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD- 304
           +L  R K L   +     + + +  E   +  ++   +E++K  + +P ++   +E++D 
Sbjct: 29  ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDM 88

Query: 305 -------------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVAL 409
                                    G   +V +++    ++ ++  ++ + LKP+  V +
Sbjct: 89  NEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGV 148

Query: 410 HRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
           ++ S  ++D LP E DS +  +   EKP   YSD+GG
Sbjct: 149 NKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGG 185
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>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 58/104 (55%)
 Frame = +2

Query: 209 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 388
           ++L ++  + ++++K +QSV  +IG+ ++ +D    IV +++G  Y V   + +++  L 
Sbjct: 33  RDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLV 92

Query: 389 PSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
               V+L   +  ++ +LP E D  +  ++  +  ++ ++ +GG
Sbjct: 93  QGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGG 136
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>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 30/103 (29%), Positives = 52/103 (50%)
 Frame = +2

Query: 212 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 391
           N +  LLR  EE++ +Q     +G+ ++ +  N  +V       Y V I   I+ + +KP
Sbjct: 49  NARVRLLR--EEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKP 106

Query: 392 SASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
           +  VAL   S  L+ +LP + D  +SL+   + P+  Y  +GG
Sbjct: 107 NIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGG 149
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>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding|
           protein homolog)
          Length = 414

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
 Frame = +2

Query: 173 VEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDGNNG 316
           ++ +E  ++D+ +NL+R  L+AQ            EE++++Q     +G+ ++++     
Sbjct: 35  IQEKEIVLRDKIENLRR--LQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKV 92

Query: 317 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPN 496
           ++  +    Y V I  +I  + L P   VAL   S AL  +LP + D  +SL+   + P+
Sbjct: 93  LIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPD 152

Query: 497 VLYSDIGG 520
             Y  +GG
Sbjct: 153 ATYEMVGG 160
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>PSMR2_HALSA (Q9HRW6) Proteasome-activating nucleotidase 2 (Proteasome|
           regulatory subunit 2)
          Length = 407

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEY------VKDEQKNLKRELLRAQEEVKRIQSVPLV 277
           +D      +L++L+  +  +E + E          E    +++L R   E K+++  PL 
Sbjct: 15  DDSASQQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLF 74

Query: 278 IGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL---LKPSASVALHRHSNALVDVLPP 448
           I    E+ D   G V    G+N     L+ +  EL   L+P + VA++ +S ++V  L  
Sbjct: 75  IATVQELTD--EGAVIKQHGNNQ--EALTEVTDELRATLEPGSRVAVN-NSLSVVRQLDD 129

Query: 449 EADSSISLLASSEKPNVLYSDIGG 520
           EAD    ++   + P+V Y DIGG
Sbjct: 130 EADVRARVMEVDDSPDVGYEDIGG 153
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>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)|
          Length = 461

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
 Frame = +2

Query: 125 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSV 268
           D+  G     Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q  
Sbjct: 7   DESRGGTGLRQYYLSKIEDLQLVVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQ 64

Query: 269 PLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 448
              +G+ +  +D    +V       + V +   I+   + P+  VAL   S  L  +LP 
Sbjct: 65  GSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPN 124

Query: 449 EADSSISLLASSEKPNVLYSDIGG 520
           + D  +SL+   + P+  Y  IGG
Sbjct: 125 KVDPLVSLMMVEKVPDSTYEMIGG 148
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>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 298
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 479 SSEKPNVLYSDIGG 520
             + P+  Y  IGG
Sbjct: 140 VEKVPDSTYEMIGG 153
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>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding
           protein homolog 10) (TBP10)
          Length = 406

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 298
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 479 SSEKPNVLYSDIGG 520
             + P+  Y  IGG
Sbjct: 140 VEKVPDSTYEMIGG 153
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>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1)
          Length = 406

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 298
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 479 SSEKPNVLYSDIGG 520
             + P+  Y  IGG
Sbjct: 140 VEKVPDSTYEMIGG 153
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>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 298
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 479 SSEKPNVLYSDIGG 520
             + P+  Y  IGG
Sbjct: 140 VEKVPDSTYEMIGG 153
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>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5)
          Length = 406

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 298
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 479 SSEKPNVLYSDIGG 520
             + P+  Y  IGG
Sbjct: 140 VEKVPDSTYEMIGG 153
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>PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog|
          Length = 438

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = +2

Query: 236 AQEEVKRIQSVPLVIGQFMEMVDG------NNGIVGSTTGSNYYVRILSTINRELLKPSA 397
           A +  +  +  PL + +  ++++       N  ++     + + V +   ++   ++   
Sbjct: 83  AADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGM 142

Query: 398 SVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
            V   R+  A+   LPP+ D S++++   EKP+V Y D+GGC
Sbjct: 143 RVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGC 184
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>PRS8_DROME (O18413) 26S protease regulatory subunit 8|
          Length = 405

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/122 (23%), Positives = 56/122 (45%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 334
           ++H     +Q +     + N K  +LR  EE++ +Q     +G+ ++ +D    +V    
Sbjct: 36  EKHQNLRRLQAQR---NELNAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHP 90

Query: 335 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDI 514
              + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + P+  Y  +
Sbjct: 91  EGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV 150

Query: 515 GG 520
           GG
Sbjct: 151 GG 152
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>PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 425

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +2

Query: 269 PLVIGQFMEMVDGNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD 436
           PL + +  ++++ N+     ++     + + V +   ++   ++    V + R+   +  
Sbjct: 84  PLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 143

Query: 437 VLPPEADSSISLLASSEKPNVLYSDIGGC 523
            LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 144 PLPPKIDPSVTMMTVEEKPDVTYNDVGGC 172
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>PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGC 173
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>PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGC 173
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>PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1a) (Regulatory
           particle triple-A ATPase subunit 1a)
          Length = 426

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGC 173
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>PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (CIM5 protein)|
           (TAT-binding homolog 3)
          Length = 467

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +2

Query: 440 LPPEADSSISLLASSEKPNVLYSDIGGC 523
           LPP  D S++++   EKP+V YSD+GGC
Sbjct: 187 LPPRIDPSVTMMTVEEKPDVTYSDVGGC 214
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>PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Proteasome|
           regulatory subunit 1)
          Length = 411

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
 Frame = +2

Query: 140 RLKSLQRH-MEFVEIQEEY------VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 298
           RL +LQ H ++ V +  E       V+  ++ L+ E+ R Q E + +++  L +    ++
Sbjct: 24  RLNALQDHYVDIVAVNGELQAQLDDVEARREELREEVNRLQRENETLKTASLYLATVEDL 83

Query: 299 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 478
            +  + ++     +   +  LS    + L+    VA++  S ++  VL  E D+    + 
Sbjct: 84  PEDGSAVIKQHGNNQEVLTELSPRLADTLEVGDRVAIN-DSFSVQRVLDDETDARAQAME 142

Query: 479 SSEKPNVLYSDIGG 520
             E P+V Y+DIGG
Sbjct: 143 VDESPSVTYADIGG 156
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>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 179
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>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 179
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>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 179
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>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 433

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 401 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 523
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 180
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>PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-binding protein|
           homolog 10) (Fragment)
          Length = 389

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 24/106 (22%), Positives = 49/106 (46%)
 Frame = +2

Query: 203 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL 382
           ++  L   +   +EE++ + +    + + ++++  N  +V       + V I  T++   
Sbjct: 30  QRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAK 89

Query: 383 LKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
           L PS   AL   S  L  +LP + D  +SL+   + P+  Y  +GG
Sbjct: 90  LTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGG 135
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>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)|
          Length = 402

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 25/103 (24%), Positives = 48/103 (46%)
 Frame = +2

Query: 212 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 391
           N K  +LR  EE++ +Q     +G+ ++ +D    +V       + V +   ++   +  
Sbjct: 49  NAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTA 106

Query: 392 SASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 520
           +  VAL   S  L  +LP + D  +SL+   + P+  Y  +GG
Sbjct: 107 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG 149
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>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7|
          Length = 435

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +2

Query: 338 SNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIG 517
           + + V +  ++    ++    V + R+   +   LP + D +++++   EKP+V YSD+G
Sbjct: 121 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVG 180

Query: 518 GC 523
           GC
Sbjct: 181 GC 182
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>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +2

Query: 119  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 229
            D D L  ++K L+  ++  +++++++K+E K LK+EL
Sbjct: 1437 DADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKEL 1473
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>HDA4_CAEEL (O17323) Histone deacetylase 4 (Histone deacetylase 7) (CeHDA-7)|
          Length = 816

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 4/129 (3%)
 Frame = +2

Query: 128 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 307
           DL G  +  Q+ +    +   Y   +Q+   + L   +  V      PL+I Q     D 
Sbjct: 2   DLIGHFQRAQQELSVQHMHNLYAALQQQQQLQNLQTERSAVN-----PLLISQQHSTEDQ 56

Query: 308 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHR----HSNALVDVLPPEADSSISLL 475
           N+G     + +N    +LS+ N  L  P      H      SN   D LP    ++IS L
Sbjct: 57  NSGPAAPLSLANSLTNLLSSSNGNLSVPQTPTKEHHPTAPTSNRKCD-LPRSNSTTISQL 115

Query: 476 ASSEKPNVL 502
                 N++
Sbjct: 116 TKDRLKNMI 124
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>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS--VPLVIGQFMEMVD 304
           ++  +Q   + +E + E +KDE  +LK +L   + EVKR+Q   V  + G+ +E+VD
Sbjct: 244 KVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEVKRLQEKLVCKMKGEGVEIVD 300
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>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +2

Query: 149 SLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 310
           +L++ + F+E Q    K+ +KNL+ EL RA E +  +      + + +E+ + +
Sbjct: 556 TLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFALAKELELANSH 609
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>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 119  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE--VKRIQS 265
            D  D+ GR+++L+  +   +     +K EQK  ++E L+AQE   +K+++S
Sbjct: 2046 DQSDIEGRIRALKDELRKRKSVVNQLKKEQKKRQKERLKAQEASLIKQLES 2096
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>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1499

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 125  DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKR 256
            D+L+ +L + ++   FVE Q   ++ E +NL R + +A+ + K+
Sbjct: 1090 DELHHQLSTSRQRRSFVEKQLTLIESEAENLTRRIRKAERDYKQ 1133
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>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 146 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 295
           K  Q  +E  +++E+  K+E+K L+ E  R +EE KRI++    I +F +
Sbjct: 381 KERQEALE-AKLEEKRKKEEEKRLREEEKRLREEEKRIKAEKAEITRFFQ 429
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>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 265
           E +++L  +++ LQR +E         +  +  LK+ELLR QEE+K +Q+
Sbjct: 592 EMEEELGEKIEVLQRELEQARASAGDTRQVEV-LKKELLRTQEELKELQA 640
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>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (BRAF35-HDAC
           complex protein BHC110)
          Length = 852

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +2

Query: 173 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 259
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 416 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 444
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>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +2

Query: 173 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 259
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 417 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 445
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>FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)|
          Length = 271

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 167 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG-NNGIVGSTTGSN 343
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G   G  GST+G++
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKEGDTGSTSGTS 190
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>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 155 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 268
           +R  EF+  QEE +K +++  K E+ R  EE+K I+S+
Sbjct: 173 ERLKEFLS-QEEQIKRQKEEKKAEIERISEEIKSIESL 209
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>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)|
          Length = 129

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 229
           E  DDL  ++ SL+  +E +E QEE V+++ + L+ EL
Sbjct: 71  EAQDDLEEKVNSLEVRVETLEKQEERVQEQFEELQSEL 108
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>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (T-cell reactive protein)
          Length = 399

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 158 RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVI 280
           R  EF+++ E Y +D +  LKR+ L   E+ + ++S+ ++I
Sbjct: 301 RGTEFIKVPETYYEDMKIRLKRQGLVLDEDFETLKSLDILI 341
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>CE290_BOVIN (Q9TU23) Centrosomal protein Cep290|
          Length = 1453

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +2

Query: 119  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 229
            D D L  ++K L+  +   +++++++K+E + LK+EL
Sbjct: 1351 DPDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKEL 1387
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>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +2

Query: 125  DDLYGRLKSLQ-------RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 283
            DDL   LKSL+       ++    E     ++ E +NL +EL   QE    +Q   L I 
Sbjct: 956  DDLTAELKSLEDKAAEVVKNTNAAEESLPEIQKEHRNLLQELKVIQENEHALQKDALSIK 1015

Query: 284  QFMEMVDGN 310
              +E +DG+
Sbjct: 1016 LKLEQIDGH 1024
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>NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 235
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIAELKRHVEFLVAENERLRKENKQLKAEKAR 205
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>NRBF2_PONPY (Q5R4C9) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 235
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205
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>NRBF2_MOUSE (Q8VCQ3) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 235
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205
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>NRBF2_HUMAN (Q96F24) Nuclear receptor-binding factor 2 (NRBF-2) (Comodulator of|
           PPAR and RXR)
          Length = 287

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 235
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205
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>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)|
           (Golgin-like protein)
          Length = 693

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRI 259
           E ++ L  + K+LQ   E +  QE+ ++ +++ L++E  R Q++ KR+
Sbjct: 362 EQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRL 409
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>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043|
          Length = 1716

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 269 PLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS-VALHRH---SNALVD 436
           P+ I Q +EMV+G  G+V       YY      +   LL P A  V  H H    N + +
Sbjct: 454 PVTIDQILEMVNGQRGLV------LYYSLAAGYLYSWLLAPGAGIVKFHEHYLGENTVEN 507

Query: 437 VLPPEADSSISL 472
               +A SS++L
Sbjct: 508 SSDFQASSSVTL 519
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>MYOC_BOVIN (Q9XTA3) Myocilin precursor (Trabecular meshwork-induced|
           glucocorticoid response protein)
          Length = 490

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 116 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 265
           E    L   L++L+R  E +E Q + ++    NL R+    +EE +R+Q+
Sbjct: 98  ETHQGLQRELEALRREREQLETQTQELESAYSNLVRDKSALEEEKRRLQA 147
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>ATP5I_BOVIN (Q00361) ATP synthase e chain, mitochondrial (EC 3.6.3.14)|
          Length = 70

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 134 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE 247
           Y  LK        +  +E+  +DEQK ++REL  AQE+
Sbjct: 29  YNYLKPRAEEERRLAAEEKKKRDEQKRIERELAEAQED 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,718,548
Number of Sequences: 219361
Number of extensions: 392521
Number of successful extensions: 2642
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 2517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2639
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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