ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart13g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506878.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1626_B09.5 mRNA Length = 1604 Score = 272 bits (137), Expect = 1e-69 Identities = 211/235 (89%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 281 gaggtggagatgaacgccggcgccgatcagggtgccacc---accgtgcgggcaactgtt 337 |||||||||||||||||||||||||| |||||||||||| |||||||| || || || Sbjct: 290 gaggtggagatgaacgccggcgccgaccagggtgccaccggcaccgtgcgtgccaccgtc 349 Query: 338 gtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagcagagaaattg 397 |||||||||| || ||||||||||||||||||||| || |||||||||||||||||| || Sbjct: 350 gtgcaggcctgcaccgtgttctacgacacccctgcgactctcgataaagcagagaaactg 409 Query: 398 atagcggaggcagctgggtatggttcacagttggttctttttccagaggtctttgttggt 457 |||| || |||||||| |||||||||||| | ||||| |||||||| |||||||||||| Sbjct: 410 gtagctgaagcagctggatatggttcacagatagttctatttccagaagtctttgttggt 469 Query: 458 ggctaccctcatgggtctacctttggactgactattggcagtcgatctgccaagg 512 || ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 470 ggttaccctcatggatctacctttggactgactattggcaatcgatctgccaagg 524 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Plus Query: 3 ccccatccactcccgggcagctgctatcaaccgtcgccctctttgccttcggcgcggggc 62 |||| |||||||| | ||||| || || |||||||| ||||| ||||||||||| || | Sbjct: 1 ccccgtccactcctcgtcagctcctctccaccgtcgctctcttcgccttcggcgcaggcc 60 Query: 63 tcctcacctacggcgctcacctctcctacgtccacatcgagccccagcgcgcgcgcaccc 122 ||||| ||||||||| ||||||||||||| |||| ||||||||||||| |||||||| | Sbjct: 61 tcctcgcctacggcgtccacctctcctacgcccacgtcgagccccagcgggcgcgcacgc 120 Query: 123 tcgcccgcgatcagttcgtccgcgactacctacgcaggaagcacgacaagtagcac 178 |||||||||| |||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 121 tcgcccgcgaccagttcgtccgcgattacctcaaaaggaagtacgacaagtagcac 176 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gcgatggctttgccccccgcgagc 262 |||||||||||| ||||||||||| Sbjct: 242 gcgatggctttggcccccgcgagc 265
>ref|XM_466923.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1480 Score = 272 bits (137), Expect = 1e-69 Identities = 211/235 (89%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 281 gaggtggagatgaacgccggcgccgatcagggtgccacc---accgtgcgggcaactgtt 337 |||||||||||||||||||||||||| |||||||||||| |||||||| || || || Sbjct: 307 gaggtggagatgaacgccggcgccgaccagggtgccaccggcaccgtgcgtgccaccgtc 366 Query: 338 gtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagcagagaaattg 397 |||||||||| || ||||||||||||||||||||| || |||||||||||||||||| || Sbjct: 367 gtgcaggcctgcaccgtgttctacgacacccctgcgactctcgataaagcagagaaactg 426 Query: 398 atagcggaggcagctgggtatggttcacagttggttctttttccagaggtctttgttggt 457 |||| || |||||||| |||||||||||| | ||||| |||||||| |||||||||||| Sbjct: 427 gtagctgaagcagctggatatggttcacagatagttctatttccagaagtctttgttggt 486 Query: 458 ggctaccctcatgggtctacctttggactgactattggcagtcgatctgccaagg 512 || ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 487 ggttaccctcatggatctacctttggactgactattggcaatcgatctgccaagg 541 Score = 155 bits (78), Expect = 2e-34 Identities = 153/178 (85%) Strand = Plus / Plus Query: 1 ctccccatccactcccgggcagctgctatcaaccgtcgccctctttgccttcggcgcggg 60 |||||| |||||||| | ||||| || || |||||||| ||||| ||||||||||| || Sbjct: 16 ctccccgtccactcctcgtcagctcctctccaccgtcgctctcttcgccttcggcgcagg 75 Query: 61 gctcctcacctacggcgctcacctctcctacgtccacatcgagccccagcgcgcgcgcac 120 |||||| ||||||||| ||||||||||||| |||| ||||||||||||| |||||||| Sbjct: 76 cctcctcgcctacggcgtccacctctcctacgcccacgtcgagccccagcgggcgcgcac 135 Query: 121 cctcgcccgcgatcagttcgtccgcgactacctacgcaggaagcacgacaagtagcac 178 ||||||||||| |||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 136 gctcgcccgcgaccagttcgtccgcgattacctcaaaaggaagtacgacaagtagcac 193 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gcgatggctttgccccccgcgagc 262 |||||||||||| ||||||||||| Sbjct: 259 gcgatggctttggcccccgcgagc 282
>dbj|AK069855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G11, full insert sequence Length = 1602 Score = 272 bits (137), Expect = 1e-69 Identities = 211/235 (89%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 281 gaggtggagatgaacgccggcgccgatcagggtgccacc---accgtgcgggcaactgtt 337 |||||||||||||||||||||||||| |||||||||||| |||||||| || || || Sbjct: 288 gaggtggagatgaacgccggcgccgaccagggtgccaccggcaccgtgcgtgccaccgtc 347 Query: 338 gtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagcagagaaattg 397 |||||||||| || ||||||||||||||||||||| || |||||||||||||||||| || Sbjct: 348 gtgcaggcctgcaccgtgttctacgacacccctgcgactctcgataaagcagagaaactg 407 Query: 398 atagcggaggcagctgggtatggttcacagttggttctttttccagaggtctttgttggt 457 |||| || |||||||| |||||||||||| | ||||| |||||||| |||||||||||| Sbjct: 408 gtagctgaagcagctggatatggttcacagatagttctatttccagaagtctttgttggt 467 Query: 458 ggctaccctcatgggtctacctttggactgactattggcagtcgatctgccaagg 512 || ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 468 ggttaccctcatggatctacctttggactgactattggcaatcgatctgccaagg 522 Score = 151 bits (76), Expect = 3e-33 Identities = 130/148 (87%) Strand = Plus / Plus Query: 32 accgtcgccctctttgccttcggcgcggggctcctcacctacggcgctcacctctcctac 91 |||||||| ||||| ||||||||||| || |||||| ||||||||| |||||||||||| Sbjct: 30 accgtcgctctcttcgccttcggcgcaggcctcctcgcctacggcgtccacctctcctac 89 Query: 92 gtccacatcgagccccagcgcgcgcgcaccctcgcccgcgatcagttcgtccgcgactac 151 | |||| ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||| Sbjct: 90 gcccacgtcgagccccagcgggcgcgcacgctcgcccgcgaccagttcgtccgcgattac 149 Query: 152 ctacgcaggaagcacgacaagtagcacg 179 || |||||| ||||||||||||||| Sbjct: 150 ctcaaaaggaagtacgacaagtagcacg 177 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gcgatggctttgccccccgcgagc 262 |||||||||||| ||||||||||| Sbjct: 240 gcgatggctttggcccccgcgagc 263
>dbj|AK058965.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C07, full insert sequence Length = 1480 Score = 272 bits (137), Expect = 1e-69 Identities = 211/235 (89%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 281 gaggtggagatgaacgccggcgccgatcagggtgccacc---accgtgcgggcaactgtt 337 |||||||||||||||||||||||||| |||||||||||| |||||||| || || || Sbjct: 307 gaggtggagatgaacgccggcgccgaccagggtgccaccggcaccgtgcgtgccaccgtc 366 Query: 338 gtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagcagagaaattg 397 |||||||||| || ||||||||||||||||||||| || |||||||||||||||||| || Sbjct: 367 gtgcaggcctgcaccgtgttctacgacacccctgcgactctcgataaagcagagaaactg 426 Query: 398 atagcggaggcagctgggtatggttcacagttggttctttttccagaggtctttgttggt 457 |||| || |||||||| |||||||||||| | ||||| |||||||| |||||||||||| Sbjct: 427 gtagctgaagcagctggatatggttcacagatagttctatttccagaagtctttgttggt 486 Query: 458 ggctaccctcatgggtctacctttggactgactattggcagtcgatctgccaagg 512 || ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 487 ggttaccctcatggatctacctttggactgactattggcaatcgatctgccaagg 541 Score = 149 bits (75), Expect = 1e-32 Identities = 129/147 (87%) Strand = Plus / Plus Query: 32 accgtcgccctctttgccttcggcgcggggctcctcacctacggcgctcacctctcctac 91 |||||||| ||||| ||||||||||| || |||||| ||||||||| |||||||||||| Sbjct: 47 accgtcgctctcttcgccttcggcgcaggcctcctcgcctacggcgtccacctctcctac 106 Query: 92 gtccacatcgagccccagcgcgcgcgcaccctcgcccgcgatcagttcgtccgcgactac 151 | |||| ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||| Sbjct: 107 gcccacgtcgagccccagcgggcgcgcacgctcgcccgcgaccagttcgtccgcgattac 166 Query: 152 ctacgcaggaagcacgacaagtagcac 178 || |||||| |||||||||||||| Sbjct: 167 ctcaaaaggaagtacgacaagtagcac 193 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gcgatggctttgccccccgcgagc 262 |||||||||||| ||||||||||| Sbjct: 259 gcgatggctttggcccccgcgagc 282
>gb|AY156979.1| Zea mays nitrilase 1 (NIT1) mRNA, complete cds Length = 1784 Score = 174 bits (88), Expect = 2e-40 Identities = 124/136 (91%) Strand = Plus / Plus Query: 352 cgtgttctacgacacccctgcaacgctcgataaagcagagaaattgatagcggaggcagc 411 ||||||||||||||||||||| || ||||||||||| ||||||||| |||| || ||||| Sbjct: 635 cgtgttctacgacacccctgcgactctcgataaagcggagaaattggtagcagaagcagc 694 Query: 412 tgggtatggttcacagttggttctttttccagaggtctttgttggtggctaccctcatgg 471 |||||||||||||||||||||| | ||||| || |||||||||||||||||||| ||||| Sbjct: 695 tgggtatggttcacagttggttttgtttccggaagtctttgttggtggctacccacatgg 754 Query: 472 gtctacctttggactg 487 ||||||||||||||| Sbjct: 755 atctacctttggactg 770 Score = 137 bits (69), Expect = 4e-29 Identities = 114/129 (88%) Strand = Plus / Plus Query: 48 ccttcggcgcggggctcctcacctacggcgctcacctctcctacgtccacatcgagcccc 107 ||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||| Sbjct: 346 ccttcggcgcgggtctccttaccttcggcatccacctctcctacgtccacatcgagcccc 405 Query: 108 agcgcgcgcgcaccctcgcccgcgatcagttcgtccgcgactacctacgcaggaagcacg 167 ||||||| ||||| ||||| || || || |||||||| |||||||| |||| |||||||| Sbjct: 406 agcgcgctcgcacgctcgctcgggaccaattcgtccgtgactacctccgcaagaagcacg 465 Query: 168 acaagtagc 176 ||||||||| Sbjct: 466 acaagtagc 474
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 380 gataaagcagagaaattgatagcggaggcagctgggtatggttcacagttggttcttttt 439 ||||||||||||||| || |||| || |||||||| |||||||||||| | ||||| ||| Sbjct: 25478962 gataaagcagagaaactggtagctgaagcagctggatatggttcacagatagttctattt 25479021 Query: 440 ccagaggtctttgttggtggctaccctcatgggtctacctttggactgactattggcagt 499 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 25479022 ccagaagtctttgttggtggttaccctcatggatctacctttggactgactattggcaat 25479081 Query: 500 cgatctgccaagg 512 ||||||||||||| Sbjct: 25479082 cgatctgccaagg 25479094 Score = 155 bits (78), Expect = 2e-34 Identities = 153/178 (85%) Strand = Plus / Plus Query: 1 ctccccatccactcccgggcagctgctatcaaccgtcgccctctttgccttcggcgcggg 60 |||||| |||||||| | ||||| || || |||||||| ||||| ||||||||||| || Sbjct: 25478028 ctccccgtccactcctcgtcagctcctctccaccgtcgctctcttcgccttcggcgcagg 25478087 Query: 61 gctcctcacctacggcgctcacctctcctacgtccacatcgagccccagcgcgcgcgcac 120 |||||| ||||||||| ||||||||||||| |||| ||||||||||||| |||||||| Sbjct: 25478088 cctcctcgcctacggcgtccacctctcctacgcccacgtcgagccccagcgggcgcgcac 25478147 Query: 121 cctcgcccgcgatcagttcgtccgcgactacctacgcaggaagcacgacaagtagcac 178 ||||||||||| |||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 25478148 gctcgcccgcgaccagttcgtccgcgattacctcaaaaggaagtacgacaagtagcac 25478205 Score = 105 bits (53), Expect = 1e-19 Identities = 85/95 (89%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 281 gaggtggagatgaacgccggcgccgatcagggtgccac---caccgtgcgggcaactgtt 337 |||||||||||||||||||||||||| ||||||||||| ||||||||| || || || Sbjct: 25478319 gaggtggagatgaacgccggcgccgaccagggtgccaccggcaccgtgcgtgccaccgtc 25478378 Query: 338 gtgcaggcctccagcgtgttctacgacacccctgc 372 |||||||||| || ||||||||||||||||||||| Sbjct: 25478379 gtgcaggcctgcaccgtgttctacgacacccctgc 25478413 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 25484384 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 25484443 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccc 369 ||| || || ||||||||||||| |||||||||||||||||| Sbjct: 25484444 ggccaccgtcgtgcaggcctccaccgtgttctacgacacccc 25484485 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 380 gataaagcagagaaattgatagcggaggcagctgggtatggttcacagttggttcttttt 439 ||||||||||||| ||||||| |||||| |||||||||||||||||||||||| | || Sbjct: 25485513 gataaagcagagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttc 25485572 Query: 440 ccagaggtctttgttggtggctaccctc 467 ||||| | |||||||| ||||| |||| Sbjct: 25485573 ccagaagcttttgttggcggctatcctc 25485600 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 82 cctctcctacgtccacatcgagccccagcgcgc 114 ||||||||||| | ||||||||||||||||||| Sbjct: 35640604 cctctcctacgccaacatcgagccccagcgcgc 35640572 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gcgatggctttgccccccgcgagc 262 |||||||||||| ||||||||||| Sbjct: 25478271 gcgatggctttggcccccgcgagc 25478294
>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1626_B09 Length = 58749 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 380 gataaagcagagaaattgatagcggaggcagctgggtatggttcacagttggttcttttt 439 ||||||||||||||| || |||| || |||||||| |||||||||||| | ||||| ||| Sbjct: 23512 gataaagcagagaaactggtagctgaagcagctggatatggttcacagatagttctattt 23571 Query: 440 ccagaggtctttgttggtggctaccctcatgggtctacctttggactgactattggcagt 499 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 23572 ccagaagtctttgttggtggttaccctcatggatctacctttggactgactattggcaat 23631 Query: 500 cgatctgccaagg 512 ||||||||||||| Sbjct: 23632 cgatctgccaagg 23644 Score = 155 bits (78), Expect = 2e-34 Identities = 153/178 (85%) Strand = Plus / Plus Query: 1 ctccccatccactcccgggcagctgctatcaaccgtcgccctctttgccttcggcgcggg 60 |||||| |||||||| | ||||| || || |||||||| ||||| ||||||||||| || Sbjct: 22578 ctccccgtccactcctcgtcagctcctctccaccgtcgctctcttcgccttcggcgcagg 22637 Query: 61 gctcctcacctacggcgctcacctctcctacgtccacatcgagccccagcgcgcgcgcac 120 |||||| ||||||||| ||||||||||||| |||| ||||||||||||| |||||||| Sbjct: 22638 cctcctcgcctacggcgtccacctctcctacgcccacgtcgagccccagcgggcgcgcac 22697 Query: 121 cctcgcccgcgatcagttcgtccgcgactacctacgcaggaagcacgacaagtagcac 178 ||||||||||| |||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 22698 gctcgcccgcgaccagttcgtccgcgattacctcaaaaggaagtacgacaagtagcac 22755 Score = 105 bits (53), Expect = 1e-19 Identities = 85/95 (89%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 281 gaggtggagatgaacgccggcgccgatcagggtgccac---caccgtgcgggcaactgtt 337 |||||||||||||||||||||||||| ||||||||||| ||||||||| || || || Sbjct: 22869 gaggtggagatgaacgccggcgccgaccagggtgccaccggcaccgtgcgtgccaccgtc 22928 Query: 338 gtgcaggcctccagcgtgttctacgacacccctgc 372 |||||||||| || ||||||||||||||||||||| Sbjct: 22929 gtgcaggcctgcaccgtgttctacgacacccctgc 22963 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 28934 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 28993 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccc 369 ||| || || ||||||||||||| |||||||||||||||||| Sbjct: 28994 ggccaccgtcgtgcaggcctccaccgtgttctacgacacccc 29035 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 380 gataaagcagagaaattgatagcggaggcagctgggtatggttcacagttggttcttttt 439 ||||||||||||| ||||||| |||||| |||||||||||||||||||||||| | || Sbjct: 30063 gataaagcagagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttc 30122 Query: 440 ccagaggtctttgttggtggctaccctc 467 ||||| | |||||||| ||||| |||| Sbjct: 30123 ccagaagcttttgttggcggctatcctc 30150 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gcgatggctttgccccccgcgagc 262 |||||||||||| ||||||||||| Sbjct: 22821 gcgatggctttggcccccgcgagc 22844
>ref|XM_466925.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1433 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 127 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 186 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 187 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 246 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 247 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 306 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 307 ttttgttggcggctatcctc 326
>ref|XM_507514.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1626_B09.8 mRNA Length = 1450 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 144 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 203 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 204 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 263 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 264 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 323 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 324 ttttgttggcggctatcctc 343
>ref|XM_506879.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1626_B09.8 mRNA Length = 1488 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 159 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 218 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 219 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 278 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 279 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 338 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 339 ttttgttggcggctatcctc 358
>dbj|AK121244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099C01, full insert sequence Length = 1448 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 142 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 201 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 202 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 261 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 262 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 321 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 322 ttttgttggcggctatcctc 341
>dbj|AK104033.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F10, full insert sequence Length = 1433 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 127 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 186 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 187 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 246 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 247 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 306 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 307 ttttgttggcggctatcctc 326
>dbj|AK069985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038N06, full insert sequence Length = 1489 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||||| ||| ||| |||| || | Sbjct: 159 gccggtgattgcggaggtggagatgaacggcggcgccgactcgggcgccgccacggtcag 218 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 219 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 278 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 279 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 338 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 339 ttttgttggcggctatcctc 358
>gb|AY156978.1| Zea mays nitrilase 2 (NIT2) mRNA, complete cds Length = 1397 Score = 127 bits (64), Expect = 4e-26 Identities = 146/174 (83%) Strand = Plus / Plus Query: 271 ggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcgggc 330 ||||||||| ||||||| |||||||| ||||||||| | |||| |||| |||||| || Sbjct: 112 ggtgatcgccgaggtggcgatgaacggcggcgccgacccaagtgcaaccascgtgcgtgc 171 Query: 331 aactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagcaga 390 ||||| |||||||| |||| | | ||| ||||||| || || || || ||||||||||| Sbjct: 172 tactgtcgtgcaggcgtccaccatcttccacgacacgcccgccactcttgataaagcaga 231 Query: 391 gaaattgatagcggaggcagctgggtatggttcacagttggttctttttccaga 444 || ||||||||| ||||| |||||||||||||||||||| ||| | |||||||| Sbjct: 232 gagattgatagcagaggctgctgggtatggttcacagttagttgtctttccaga 285
>dbj|AB027054.1| Oryza sativa (japonica cultivar-group) ONIT4 mRNA for nitrilase-like protein, complete cds Length = 1089 Score = 127 bits (64), Expect = 4e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 268 gccggtgatcgcagaggtggagatgaacgccggcgccgatcagggtgccaccaccgtgcg 327 ||||||||| || |||||||||||||||| ||||||| ||| ||| | || || | Sbjct: 36 gccggtgattgcggaggtggagatgaacggcggcgccacctcgggcgccgcaacggtcag 95 Query: 328 ggcaactgttgtgcaggcctccagcgtgttctacgacacccctgcaacgctcgataaagc 387 ||| || || ||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct: 96 ggccaccgtcgtgcaggcctccaccgtgttctacgacaccccggccactctagataaagc 155 Query: 388 agagaaattgatagcggaggcagctgggtatggttcacagttggttctttttccagaggt 447 ||||| ||||||| |||||| |||||||||||||||||||||||| | || ||||| | Sbjct: 156 agagaggttgatagaggaggctgctgggtatggttcacagttggttgtgttcccagaagc 215 Query: 448 ctttgttggtggctaccctc 467 |||||||| ||||| |||| Sbjct: 216 ttttgttggcggctatcctc 235
>ref|XM_468519.1| Oryza sativa (japonica cultivar-group), mRNA Length = 492 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 82 cctctcctacgtccacatcgagccccagcgcgc 114 ||||||||||| | ||||||||||||||||||| Sbjct: 126 cctctcctacgccaacatcgagccccagcgcgc 158
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 82 cctctcctacgtccacatcgagccccagcgcgc 114 ||||||||||| | ||||||||||||||||||| Sbjct: 156996 cctctcctacgccaacatcgagccccagcgcgc 156964
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 82 cctctcctacgtccacatcgagccccagcgcgc 114 ||||||||||| | ||||||||||||||||||| Sbjct: 1218 cctctcctacgccaacatcgagccccagcgcgc 1186
>dbj|AK062497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-A03, full insert sequence Length = 492 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 82 cctctcctacgtccacatcgagccccagcgcgc 114 ||||||||||| | ||||||||||||||||||| Sbjct: 126 cctctcctacgccaacatcgagccccagcgcgc 158
>gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chromosome 2, complete sequence Length = 139973 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 429 tggttctttttccagaggtcttt 451 ||||||||||||||||||||||| Sbjct: 6107 tggttctttttccagaggtcttt 6129
>gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromosome 2, complete sequence Length = 211457 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 429 tggttctttttccagaggtcttt 451 ||||||||||||||||||||||| Sbjct: 120298 tggttctttttccagaggtcttt 120276
>gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromosome 2, complete sequence Length = 179528 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 429 tggttctttttccagaggtcttt 451 ||||||||||||||||||||||| Sbjct: 83660 tggttctttttccagaggtcttt 83682
>gb|S35738.1|S35738S1 Hox-2.7=upstream reading frame of type II transcript {type II alternative transcript} [mice, mRNA, 1968 nt, segment 1 of 2] Length = 1968 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 95 cacatcgagccccagcgcgcgcg 117 ||||||||||||||||||||||| Sbjct: 365 cacatcgagccccagcgcgcgcg 343
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 gcgcgcgcgcaccctcgcccgc 130 |||||||||||||||||||||| Sbjct: 322780 gcgcgcgcgcaccctcgcccgc 322759
>emb|AJ439610.1|CPU439610 Claviceps purpurea ps2 gene for peptide sythetase Length = 4800 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 487 gactattggcagtcgatctgccaagg 512 ||||||||||||||||| |||||||| Sbjct: 3810 gactattggcagtcgatgtgccaagg 3835
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 102 agccccagcgcgcgcgcaccctcgcc 127 |||||||||||||||||||| ||||| Sbjct: 93311 agccccagcgcgcgcgcaccttcgcc 93286
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 286 ggagatgaacgccggcgccgatcagggtg 314 |||| |||| ||||||||||||||||||| Sbjct: 716274 ggagctgaaggccggcgccgatcagggtg 716246
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 atcgagccccagcgcgcgcgc 118 ||||||||||||||||||||| Sbjct: 3831368 atcgagccccagcgcgcgcgc 3831348
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gccttcggcgcggggctcct 66 |||||||||||||||||||| Sbjct: 2654726 gccttcggcgcggggctcct 2654745
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gcgcgcaccctcgcccgcga 132 |||||||||||||||||||| Sbjct: 2064456 gcgcgcaccctcgcccgcga 2064475
>gb|AY133248.1| Aegilops tauschii starch synthase II gene, complete cds Length = 9024 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcgcgcgcaccctcgcccgc 130 |||||||||||||||||||| Sbjct: 1570 gcgcgcgcaccctcgcccgc 1551
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tcctgctcggcggcgatggc 246 |||||||||||||||||||| Sbjct: 1157874 tcctgctcggcggcgatggc 1157855
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ggtggagatgaacgccggcg 302 |||||||||||||||||||| Sbjct: 3048573 ggtggagatgaacgccggcg 3048592
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tgaacgccggcgccgatcag 310 |||||||||||||||||||| Sbjct: 4226171 tgaacgccggcgccgatcag 4226190 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tgaacgccggcgccgatcag 310 |||||||||||||||||||| Sbjct: 2672274 tgaacgccggcgccgatcag 2672293
>emb|AL354929.8| Human DNA sequence from clone RP11-189O8 on chromosome 1, complete sequence Length = 100501 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 taaagcagagaaattgatag 401 |||||||||||||||||||| Sbjct: 83633 taaagcagagaaattgatag 83652
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tcgagccccagcgcgcgcgc 118 |||||||||||||||||||| Sbjct: 2272507 tcgagccccagcgcgcgcgc 2272488
>emb|AL049591.12|HSJ878I13 Human DNA sequence from clone RP5-878I13 on chromosome Xq23-25 Contains an alpha tubulin pseudogene, complete sequence Length = 122400 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tttttccagaggtctttgtt 454 |||||||||||||||||||| Sbjct: 67661 tttttccagaggtctttgtt 67680
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tgaacgccggcgccgatcag 310 |||||||||||||||||||| Sbjct: 244091 tgaacgccggcgccgatcag 244072
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctcgcccgcgatcagttcgt 141 |||||||||||||||||||| Sbjct: 220357 ctcgcccgcgatcagttcgt 220338
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cgagccccagcgcgcgcgca 119 |||||||||||||||||||| Sbjct: 268749 cgagccccagcgcgcgcgca 268730
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tgaacgccggcgccgatcag 310 |||||||||||||||||||| Sbjct: 4601927 tgaacgccggcgccgatcag 4601946
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcggcgcggggctcctcacc 70 |||||||||||||||||||| Sbjct: 1696519 tcggcgcggggctcctcacc 1696500
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 100 cgagccccagcgcgcgcgcaccctcgcccgcgatca 135 |||||||||||||| |||| || |||||||||||| Sbjct: 4289482 cgagccccagcgcgagcgcgaccgcgcccgcgatca 4289447
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tcgagccccagcgcgcgcgc 118 |||||||||||||||||||| Sbjct: 3633827 tcgagccccagcgcgcgcgc 3633846
>emb|BX005478.7| Zebrafish DNA sequence from clone CH211-77G9, complete sequence Length = 152152 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ggttcacagttggttctttt 438 |||||||||||||||||||| Sbjct: 142341 ggttcacagttggttctttt 142360
>emb|BX005015.5| Zebrafish DNA sequence from clone CH211-66I11 in linkage group 9, complete sequence Length = 172283 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ggttcacagttggttctttt 438 |||||||||||||||||||| Sbjct: 22143 ggttcacagttggttctttt 22124
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cgagccccagcgcgcgcgca 119 |||||||||||||||||||| Sbjct: 282000 cgagccccagcgcgcgcgca 281981
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cgccggcgccgatcagggtg 314 |||||||||||||||||||| Sbjct: 4288184 cgccggcgccgatcagggtg 4288203 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,406,404 Number of Sequences: 3902068 Number of extensions: 3406404 Number of successful extensions: 61523 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59473 Number of HSP's gapped (non-prelim): 2030 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
