ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart13g02 |
|---|---|
| Clone Library Name | barley_pub |
>HMT1_MAIZE (Q9FUN0) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (ZmHMT-1) Length = 323 Score = 239 bits (610), Expect = 4e-63 Identities = 118/144 (81%), Positives = 126/144 (87%) Frame = +2 Query: 110 GVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGA 289 GV+E+LV +AGGCAVIDGGFATQLEALGADINDPLWSAACLIT+PHL+KEVHMQYLEAGA Sbjct: 2 GVLEDLVARAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGA 61 Query: 290 DVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYNRALV 469 DVIISSSYQATIPGF TSV+LA EARDEFWKSTLRKSKP+YNRALV Sbjct: 62 DVIISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRALV 121 Query: 470 AASVGSYGAYLADGSEYSGSYGDD 541 AAS+GSYGAYLADGSEYSGSYG D Sbjct: 122 AASIGSYGAYLADGSEYSGSYGAD 145
>HMT1_ARATH (Q9SDL7) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 189 bits (479), Expect = 6e-48 Identities = 91/143 (63%), Positives = 108/143 (75%) Frame = +2 Query: 113 VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGAD 292 ++E+L+KK GGCAV+DGGFATQLE GA INDPLWSA LI P LIK VHM+YLEAGAD Sbjct: 9 LLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGAD 68 Query: 293 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYNRALVA 472 ++++SSYQATIPGF SV+LA+EARD FW+ + S YNRALVA Sbjct: 69 IVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVA 128 Query: 473 ASVGSYGAYLADGSEYSGSYGDD 541 AS+GSYGAYLADGSEYSG YG++ Sbjct: 129 ASIGSYGAYLADGSEYSGHYGEN 151
>HMT2_MAIZE (Q9FUM9) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (ZmHMT-2) Length = 339 Score = 170 bits (430), Expect = 3e-42 Identities = 86/147 (58%), Positives = 106/147 (72%), Gaps = 4/147 (2%) Frame = +2 Query: 110 GVVEELVKK----AGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYL 277 G EE V++ AGG V+DGG AT+LEA GAD+NDPLWSA CL++ PHLI++VHM YL Sbjct: 7 GSAEEAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYL 66 Query: 278 EAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYN 457 EAGA++II++SYQATI GF SV++ALEAR+ F K L KS P+ + Sbjct: 67 EAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQH 126 Query: 458 RALVAASVGSYGAYLADGSEYSGSYGD 538 LVAAS+GSYGAYLADGSEYSG YG+ Sbjct: 127 PVLVAASLGSYGAYLADGSEYSGDYGE 153
>HMT3_MAIZE (Q9FUM8) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (ZmHMT-3) Length = 338 Score = 169 bits (428), Expect = 5e-42 Identities = 87/149 (58%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Frame = +2 Query: 98 AMGGG--VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQ 271 A GG V V AGG V+DGG AT+LEA GAD+NDPLWSA CL++ PHLI++VHM Sbjct: 5 AEGGAERAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMD 64 Query: 272 YLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPV 451 YLEAGA++II++SYQATI GF SVQ+ALEAR+ F K L KS P+ Sbjct: 65 YLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPI 124 Query: 452 YNRALVAASVGSYGAYLADGSEYSGSYGD 538 + LVAA++GSYGAYLADGSEYSG YG+ Sbjct: 125 QHPILVAAALGSYGAYLADGSEYSGDYGE 153
>HMT4_MAIZE (Q9FUM7) Homocysteine S-methyltransferase 4 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S-methyltransferase 4) (ZmHMT-4) Length = 342 Score = 155 bits (393), Expect = 5e-38 Identities = 82/142 (57%), Positives = 96/142 (67%) Frame = +2 Query: 110 GVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGA 289 G + V++AGGCAV+DGG T+LEA GAD++D LWSA CL + PHLI++VH+ YLEAGA Sbjct: 12 GALRGFVREAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGA 71 Query: 290 DVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYNRALV 469 DVIIS+SYQATI GF SV +A EAR F R S+ ALV Sbjct: 72 DVIISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALV 131 Query: 470 AASVGSYGAYLADGSEYSGSYG 535 AASVGSYGAY ADGSEYSG YG Sbjct: 132 AASVGSYGAYRADGSEYSGDYG 153
>HMT2_ARATH (Q9M1W4) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (AtHMT-2) Length = 333 Score = 154 bits (388), Expect = 2e-37 Identities = 80/150 (53%), Positives = 99/150 (66%), Gaps = 9/150 (6%) Frame = +2 Query: 116 VEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADV 295 +++ +K+ GG AVIDGG AT+ E GAD+NDPLWSA CL+T PHLI VH+ YLEAGAD+ Sbjct: 9 MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68 Query: 296 IISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFW---------KSTLRKSKP 448 I S+SYQATI GF SV++A EAR+ ++ + K +P Sbjct: 69 ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRP 128 Query: 449 VYNRALVAASVGSYGAYLADGSEYSGSYGD 538 + LVAASVGSYGAYLADGSEYSG YGD Sbjct: 129 I----LVAASVGSYGAYLADGSEYSGIYGD 154
>HMT3_ARATH (Q8LAX0) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (AtHMT-3) Length = 347 Score = 154 bits (388), Expect = 2e-37 Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 7/149 (4%) Frame = +2 Query: 113 VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGAD 292 ++ + ++K GG AV+DGGFAT+L+ GADINDPLWSA CLIT PHL+ +VH+ YLE+GA+ Sbjct: 12 LMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGAN 71 Query: 293 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKS-------KPV 451 +II++SYQATI GF SV++ EAR+ F+ + S K Sbjct: 72 IIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKAS 131 Query: 452 YNRALVAASVGSYGAYLADGSEYSGSYGD 538 LVAASVGSYGAYLADGSEYSG YGD Sbjct: 132 RRPILVAASVGSYGAYLADGSEYSGIYGD 160
>SMTA_ASTBI (P56707) Selenocysteine methyltransferase (EC 2.1.1.-)| (SECYS-methyltransferase) (SECYS-MT) Length = 338 Score = 145 bits (365), Expect = 9e-35 Identities = 75/158 (47%), Positives = 102/158 (64%), Gaps = 12/158 (7%) Frame = +2 Query: 101 MGGGVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLE 280 M ++ + + +AG AVI GG T+L+ GAD+NDPLWSA CL++ PHLI++VH+ YLE Sbjct: 1 MSSPLITDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLE 60 Query: 281 AGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWK------------ 424 GAD+II++SYQATI GF SV++A EARD +++ Sbjct: 61 NGADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDD 120 Query: 425 STLRKSKPVYNRALVAASVGSYGAYLADGSEYSGSYGD 538 S + K +P+ L+A SVGSYGAYLADGSE+SG+YGD Sbjct: 121 SRILKQRPI----LIAGSVGSYGAYLADGSEFSGNYGD 154
>MMUM_ECOLI (Q47690) Homocysteine S-methyltransferase (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase) Length = 310 Score = 107 bits (267), Expect = 2e-23 Identities = 58/127 (45%), Positives = 72/127 (56%) Frame = +2 Query: 152 VIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPG 331 ++DG AT+LEA G ++ D LWSA L+ P LI+EVH+ Y AGA I++SYQAT G Sbjct: 18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAG 77 Query: 332 FXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYNRALVAASVGSYGAYLADG 511 F SV+LA +AR+ + P LVA SVG YGAYLADG Sbjct: 78 FAARGLDEAQSKALIGKSVELARKAREAY-----LAENPQAGTLLVAGSVGPYGAYLADG 132 Query: 512 SEYSGSY 532 SEY G Y Sbjct: 133 SEYRGDY 139
>MHT1_YEAST (Q12525) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) Length = 324 Score = 51.6 bits (122), Expect = 1e-06 Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 10/151 (6%) Frame = +2 Query: 113 VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKP---------HLIKEVH 265 + E +V+ G ++DGG T+LE G +IN P+WSAA ++ +++E++ Sbjct: 6 IKELIVEHPGKVLILDGGQGTELENRGININSPVWSAAPFTSESFWEPSSQERKVVEEMY 65 Query: 266 MQYLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSK 445 ++ AGA+++++ +YQA TS++ L A F + ++ Sbjct: 66 RDFMIAGANILMTITYQANFQSI------------SENTSIK-TLAAYKRFLDKIVSFTR 112 Query: 446 P-VYNRALVAASVGSYGAYLADGSEYSGSYG 535 + + S+G + A+++ EY+G YG Sbjct: 113 EFIGEERYLIGSIGPWAAHVS--CEYTGDYG 141
>SAM4_YEAST (Q08985) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (S-adenosylmethionine metabolism protein 4) Length = 325 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 10/67 (14%) Frame = +2 Query: 152 VIDGGFATQLEALGADINDPLWSAACLITKP----------HLIKEVHMQYLEAGADVII 301 V+DGG T+LE G + +P+WS I++ ++KE+ +L AGA++++ Sbjct: 19 VLDGGQGTELENRGIKVANPVWSTIPFISESFWSDESSANRKIVKEMFNDFLNAGAEILM 78 Query: 302 SSSYQAT 322 +++YQ + Sbjct: 79 TTTYQTS 85
>METH_VIBVY (Q7MHB1) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 230 LITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEAR 409 ++T+P LIKE+H YLEAGAD++ ++++ AT + +LA EA Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAM-ADYDMESLSEEINFAAAKLAREAA 116 Query: 410 DEFWKSTLRKSKPVY 454 DE+ + +KP Y Sbjct: 117 DEW--TAKNPAKPRY 129
>METH_VIBVU (Q8DCJ7) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 230 LITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEAR 409 ++T+P LIKE+H YLEAGAD++ ++++ AT + +LA EA Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAM-ADYDMESLSEEINFAAARLAREAA 116 Query: 410 DEFWKSTLRKSKPVY 454 DE+ + +KP Y Sbjct: 117 DEW--TAQNPAKPRY 129
>METH_VIBPA (Q87L95) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 13/113 (11%) Frame = +2 Query: 152 VIDGGFATQLEALGADIND------PLWSA-------ACLITKPHLIKEVHMQYLEAGAD 292 +IDGG T ++ + D W ++++P LIKE+H YLEAGAD Sbjct: 19 LIDGGMGTMIQGYKLEEQDYRGERFANWHCDLKGNNDLLVLSQPQLIKEIHSAYLEAGAD 78 Query: 293 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPV 451 ++ ++++ AT + +LA E DE+ T K + V Sbjct: 79 ILETNTFNATTIAM-ADYEMESLSEEINFAAAKLAREVADEWTAKTPDKPRYV 130
>METH_VIBCH (Q9KUW9) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 15/72 (20%) Frame = +2 Query: 152 VIDGGFATQLEAL--------GADINDPLWSA-------ACLITKPHLIKEVHMQYLEAG 286 +IDGG T +++ GA D W ++T+P +IKE+H YLEAG Sbjct: 19 LIDGGMGTMIQSYKLQEEDYRGARFVD--WHCDLKGNNDLLVLTQPQIIKEIHSAYLEAG 76 Query: 287 ADVIISSSYQAT 322 AD++ ++++ +T Sbjct: 77 ADILETNTFNST 88
>METH_VIBFI (Q9AJQ8) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 37.0 bits (84), Expect = 0.035 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 13/70 (18%) Frame = +2 Query: 152 VIDGGFATQLEALGADIND------PLWSA-------ACLITKPHLIKEVHMQYLEAGAD 292 +IDGG T ++ + D W ++++P +I+++H YLEAGAD Sbjct: 20 LIDGGMGTMIQGYKFEEKDYRGGRFNQWHCDLKGNNDLLVLSQPQIIRDIHEAYLEAGAD 79 Query: 293 VIISSSYQAT 322 ++ ++++ AT Sbjct: 80 ILETNTFNAT 89
>METH_VIBF1 (Q5E814) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 37.0 bits (84), Expect = 0.035 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 13/70 (18%) Frame = +2 Query: 152 VIDGGFATQLEALGADIND------PLWSA-------ACLITKPHLIKEVHMQYLEAGAD 292 +IDGG T ++ + D W ++++P +I+++H YLEAGAD Sbjct: 20 LIDGGMGTMIQGYKFEEEDYRGERFNKWHCDLKGNNDLLVLSQPQIIRDIHEAYLEAGAD 79 Query: 293 VIISSSYQAT 322 ++ ++++ AT Sbjct: 80 ILETNTFNAT 89
>METH_MYCTU (O33259) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1192 Score = 34.7 bits (78), Expect = 0.18 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = +2 Query: 158 DGGFATQLEALGADINDPLWSAACLI----TKPHLIKEVHMQYLEAGADVIISSSY 313 DG TQL+A ++D C T+P +++ +H Y EAGAD + ++++ Sbjct: 25 DGAMGTQLQAADLTLDDFRGLEGCNEILNETRPDVLETIHRNYFEAGADAVETNTF 80
>METH_HUMAN (Q99707) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1265 Score = 34.3 bits (77), Expect = 0.23 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = +2 Query: 233 ITKPHLIKEVHMQYLEAGADVIISSSYQAT 322 IT+P +I ++H +YL AGAD+I ++++ +T Sbjct: 72 ITQPDVIYQIHKEYLLAGADIIETNTFSST 101
>METH_CAEEL (Q09582) Probable methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1249 Score = 33.9 bits (76), Expect = 0.30 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = +2 Query: 233 ITKPHLIKEVHMQYLEAGADVIISSSYQAT 322 IT+P +I ++H YLEAGAD + ++++ T Sbjct: 60 ITRPDIIYKIHKLYLEAGADFVETNTFSGT 89
>METH_SALTY (P37586) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 33.5 bits (75), Expect = 0.39 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +2 Query: 230 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 322 +++KP +I +H Y EAGAD+I ++++ +T Sbjct: 56 VLSKPEVIAAIHNAYFEAGADIIETNTFNST 86
>METH_ECOLI (P13009) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12-dependent isozyme) (MS) Length = 1226 Score = 33.5 bits (75), Expect = 0.39 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +2 Query: 230 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 322 +++KP +I +H Y EAGAD+I ++++ +T Sbjct: 56 VLSKPEVIAAIHNAYFEAGADIIETNTFNST 86
>METH_PSEPU (O33465) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) (Fragment) Length = 607 Score = 32.7 bits (73), Expect = 0.67 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 13/70 (18%) Frame = +2 Query: 152 VIDGGFATQLEALGADINDPL------WSA-------ACLITKPHLIKEVHMQYLEAGAD 292 ++DGG T +++ + +D W + L+++P +I + YL+AGAD Sbjct: 21 ILDGGMGTMIQSYRLEEHDYRGTRFADWPSDVKGNNDLLLLSRPDVIAAIEKAYLDAGAD 80 Query: 293 VIISSSYQAT 322 ++ ++++ AT Sbjct: 81 ILETNTFNAT 90
>METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1206 Score = 32.7 bits (73), Expect = 0.67 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +2 Query: 158 DGGFATQLEALGADINDPLWSAACLI----TKPHLIKEVHMQYLEAGADVIISSSY 313 DG TQL+ ++D C T+P +++ +H +Y EAGAD++ ++++ Sbjct: 27 DGAMGTQLQDAELTLDDFRGLEGCNEILNETRPDVLETIHRRYFEAGADLVETNTF 82
>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)| Length = 203 Score = 30.8 bits (68), Expect = 2.5 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 232 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAPRGGRR 369 HHQ P + ++ + + HH+ V+P P VP Q P G++ Sbjct: 77 HHQIIPVVSQQHPLTHTLQSHHHIPVVPAQQPRVPQQAMMPVPGQQ 122
>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1195 Score = 30.8 bits (68), Expect = 2.5 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Frame = +2 Query: 152 VIDGGFATQLEA---LGADINDPLWSAA---CLITKPHLIKEVHMQYLEAGADVIISSSY 313 V DG T L+ AD + + TKP + VH + EAGADV+ + ++ Sbjct: 18 VFDGAMGTNLQVQNLTAADFGGAEYEGCNEYLVHTKPEAVATVHRAFYEAGADVVETDTF 77 Query: 314 QAT 322 T Sbjct: 78 GGT 80
>AMEL_PIG (P45561) Amelogenin precursor (Amelogenin 173A/173B) (Leucine-rich| amelogenin peptide) (LRAP) Length = 189 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 232 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAPRGGR 366 HHQ P S + + HH+ ++P PG+P Q P G+ Sbjct: 63 HHQIIPVVSQQTPQSHALQPHHHIPMVPAQQPGIPQQPMMPLPGQ 107
>EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase substrate 8| Length = 821 Score = 30.0 bits (66), Expect = 4.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 Query: 80 YTLAQSTARSQHQAQQDSRRAKT 12 Y LA+S A ++HQ +QDS+R T Sbjct: 454 YQLAESVANAEHQRKQDSKRLST 476
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%) Frame = +1 Query: 232 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPG---QRTAPRG 360 HHQAAP G A + HHLL P P TAP G Sbjct: 535 HHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYHTTAPSG 580
>NEST_RAT (P21263) Nestin| Length = 1805 Score = 28.9 bits (63), Expect = 9.6 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = -1 Query: 505 GEVRSVAPDGRGDEGAVVDGLRLPQRRLPELVSGLQRQLDAGSQ*PFCLLEE----QSSG 338 G S + G+EG V D L PQ + +V G+ D G Q P E+ +G Sbjct: 1685 GSEESESASLEGEEGQVTDHLDAPQ-EVTSMVPGVGDAFDIGGQSPNLDSEQVNGKMENG 1743 Query: 337 QEPRDSCLVGRGDDD 293 E + +V GD+D Sbjct: 1744 LEQAEGQVVLDGDED 1758
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 313 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPR 411 P +PG PG P+G N PAG GPR Sbjct: 260 PPGFPGAPG----PKGELGPVGNPGPAGPAGPR 288
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 313 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPR 411 P +PG PG P+G N PAG GPR Sbjct: 260 PPGFPGAPG----PKGELGPVGNPGPAGPAGPR 288
>COEC_SCYCA (P81130) Egg case collagen (Fragments)| Length = 209 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/35 (45%), Positives = 16/35 (45%) Frame = +1 Query: 304 LVLPGNYPGVPGQRTAPRGGRRVTANQRPAGAGGP 408 LVLP YPG PG PRGG G G P Sbjct: 128 LVLPAGYPGTPG-TPGPRGGPGDPGMPGEPGVGFP 161
>SYH_CHLMU (Q9PJJ9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 28.9 bits (63), Expect = 9.6 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = +2 Query: 104 GGGVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHM 268 GGG +ELV ++GG A+ GF LE + I L A L T P ++ + M Sbjct: 289 GGGRYDELVAQSGGPAMPAFGFGVGLERV---IQTLLEQGAALPTAPRRLRLIPM 340
>AMPN_RABIT (P15541) Aminopeptidase N (EC 3.4.11.2) (rbAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (CD13 antigen) Length = 965 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +2 Query: 155 IDGGFATQLEALGADINDPLWSAACLITKPHLIKEVH 265 ++ GFA+ +E LGAD +P W+ LI ++ E+H Sbjct: 404 LNEGFASYVEYLGADYAEPTWNLKDLI----VLNELH 436
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 313 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPR 411 P +PG PG P+G N PAG GPR Sbjct: 252 PPGFPGAPG----PKGELGPVGNPGPAGPAGPR 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,082,110 Number of Sequences: 219361 Number of extensions: 1272423 Number of successful extensions: 5517 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5501 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
