Clone Name | bart13f06 |
---|---|
Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 67.8 bits (164), Expect = 2e-11 Identities = 47/105 (44%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Frame = +2 Query: 182 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 349 MEDERSTQSYQG EA +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 350 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENGEVI 481 DGEKKETLFSKLHR VID+NGEVI Sbjct: 61 KKEEHEDGEKKETLFSKLHR-SSSSSSSSSDEEEEEVIDDNGEVI 104
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 31.2 bits (69), Expect = 1.9 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -2 Query: 254 GPCPSPPPDRPQLPGMTGCSSHPP 183 GPCP PPP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -2 Query: 251 PCPSPPPDRPQLPGMTGCSSHPP 183 P P PPP P LPG T S PP Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -3 Query: 178 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 89 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -3 Query: 178 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 89 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%) Frame = -2 Query: 251 PCPSPPPD----RPQLPGMTGCSSHPP 183 PCPSPPP P P + C S PP Sbjct: 87 PCPSPPPKPQPKPPPAPSPSPCPSPPP 113
>ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 28.9 bits (63), Expect = 9.5 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 132 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 224 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKSECR 346 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,241,136 Number of Sequences: 219361 Number of extensions: 644576 Number of successful extensions: 3032 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2372 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2954 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)