ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart13f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 68 2e-11
2DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re... 31 1.9
3DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 30 3.3
4RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (R... 29 7.3
5RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RD... 29 7.3
6APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 29 9.5
7ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precur... 29 9.5

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 47/105 (44%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +2

Query: 182 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 349
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 350 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENGEVI 481
                 DGEKKETLFSKLHR                VID+NGEVI
Sbjct: 61  KKEEHEDGEKKETLFSKLHR-SSSSSSSSSDEEEEEVIDDNGEVI 104



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>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 254 GPCPSPPPDRPQLPGMTGCSSHPP 183
           GPCP PPP  P  P + G    PP
Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579



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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 251 PCPSPPPDRPQLPGMTGCSSHPP 183
           P P PPP  P LPG T  S  PP
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623



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>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 878

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -3

Query: 178 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 89
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317



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>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 881

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -3

Query: 178 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 89
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = -2

Query: 251 PCPSPPPD----RPQLPGMTGCSSHPP 183
           PCPSPPP      P  P  + C S PP
Sbjct: 87  PCPSPPPKPQPKPPPAPSPSPCPSPPP 113



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>ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)|
           (G-protein coupled receptor 37-like 1)
          Length = 481

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 224
           C+  LP +F+ T +  +WR+RG P    E R
Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKSECR 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,241,136
Number of Sequences: 219361
Number of extensions: 644576
Number of successful extensions: 3032
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2954
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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