ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart13f02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472296.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2175 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 160 ctcggcggcggcggggccgtctcctccttcc 190 |||| ||||||||| |||||||||||||||| Sbjct: 110 ctcgtcggcggcggcgccgtctcctccttcc 140
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 160 ctcggcggcggcggggccgtctcctccttcc 190 |||| ||||||||| |||||||||||||||| Sbjct: 20046 ctcgtcggcggcggcgccgtctcctccttcc 20076
>dbj|AB190915.1| Oryza sativa (japonica cultivar-group) osysl5 mRNA for hypothetical protein, complete cds Length = 2172 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 160 ctcggcggcggcggggccgtctcctccttcc 190 |||| ||||||||| |||||||||||||||| Sbjct: 90 ctcgtcggcggcggcgccgtctcctccttcc 120
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 160 ctcggcggcggcggggccgtctcctccttcc 190 |||| ||||||||| |||||||||||||||| Sbjct: 19238216 ctcgtcggcggcggcgccgtctcctccttcc 19238246 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 cctcgccgccgccggacggcgtcgccgg 144 |||||||||||||||| |||||||||| Sbjct: 28999896 cctcgccgccgccggagcgcgtcgccgg 28999923 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 28783317 gccgccgccggacgccgtcgccgg 28783340 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgcctcccctcgccgccgcc 129 |||||||||||||||||||| Sbjct: 20018681 cgcctcccctcgccgccgcc 20018700
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Minus Query: 140 gccgggcaaagcccgtgcggctcggcggcggcggggcc 177 ||||||||||||| || ||| |||||||||||||||| Sbjct: 28536 gccgggcaaagcctgtccgggccggcggcggcggggcc 28499
>ref|NM_196356.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0058B20.8), mRNA Length = 624 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cgcctcccctcgccgccgccg 130 ||||||||||||||||||||| Sbjct: 212 cgcctcccctcgccgccgccg 192
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 gggcggcgtggcgcgggccgt 216 ||||||||||||||||||||| Sbjct: 1392710 gggcggcgtggcgcgggccgt 1392730
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 cgccgccgccggacggcgtcgccgg 144 ||||||||||||||| ||||||||| Sbjct: 50938 cgccgccgccggacgccgtcgccgg 50914
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 67624 cctcccctcgccgccgccgga 67604
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 162 cggcggcggcggggccgtctcctccttcc 190 |||||||||||| | |||||||||||||| Sbjct: 1297998 cggcggcggcggcggcgtctcctccttcc 1297970 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 20658523 gccgccgccggacgccgtcgccgg 20658500
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 328 tcgcgcccgtccgcgagggcgcgtgggtg 356 ||||| |||||||||| |||||||||||| Sbjct: 3707081 tcgcggccgtccgcgacggcgcgtgggtg 3707109
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cgcctcccctcgccgccgccg 130 ||||||||||||||||||||| Sbjct: 28889 cgcctcccctcgccgccgccg 28869
>gb|AC087752.12| Homo sapiens chromosome 8, clone RP11-347C18, complete sequence Length = 164928 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gcctcccctcgccgccgccgg 131 ||||||||||||||||||||| Sbjct: 51132 gcctcccctcgccgccgccgg 51152
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 32076 tcggcggcggcggggccgtct 32056
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 8835507 cctcccctcgccgccgccgga 8835487 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtgcggctcggcggcggcgg 173 |||||||||||||||||||| Sbjct: 25647356 gtgcggctcggcggcggcgg 25647337
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 cgccgccgccggacggcgtcgccgg 144 ||||||||||||||| ||||||||| Sbjct: 3683266 cgccgccgccggacgccgtcgccgg 3683242
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgcctcccctcgccgccgccg 130 ||||||||||||||||||||| Sbjct: 12891961 cgcctcccctcgccgccgccg 12891981
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 gcaggcttgcagcgctgctgc 521 ||||||||||||||||||||| Sbjct: 20644870 gcaggcttgcagcgctgctgc 20644850 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cgcctcccctcgccgccgccg 130 ||||||||||||||||||||| Sbjct: 10025852 cgcctcccctcgccgccgccg 10025832 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 355837 cctcccctcgccgccgccgga 355817
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 cgccgccgccggacggcgtcgccgg 144 ||||||||||||||| ||||||||| Sbjct: 11450064 cgccgccgccggacgccgtcgccgg 11450040 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ctcccctcgccgccgccgga 132 |||||||||||||||||||| Sbjct: 20201312 ctcccctcgccgccgccgga 20201293
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 21088759 cctcccctcgccgccgccgga 21088739 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 ccacgcctcccctcgccgccgccg 130 ||||||||||| |||||||||||| Sbjct: 17548868 ccacgcctcccgtcgccgccgccg 17548891
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 162 cggcggcggcggggccgtctcctccttcc 190 |||||||||||| | |||||||||||||| Sbjct: 1297996 cggcggcggcggcggcgtctcctccttcc 1297968 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 20651552 gccgccgccggacgccgtcgccgg 20651529
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 162 cggcggcggcggggccgtctcctccttcc 190 |||||||||||| | |||||||||||||| Sbjct: 102900 cggcggcggcggcggcgtctcctccttcc 102872
>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0414D03 Length = 169823 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 104436 cctcccctcgccgccgccgga 104416
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1112_E07 Length = 132055 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 gcaggcttgcagcgctgctgc 521 ||||||||||||||||||||| Sbjct: 38481 gcaggcttgcagcgctgctgc 38461
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 gcaggcttgcagcgctgctgc 521 ||||||||||||||||||||| Sbjct: 110528 gcaggcttgcagcgctgctgc 110508
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cgcctcccctcgccgccgccg 130 ||||||||||||||||||||| Sbjct: 55156 cgcctcccctcgccgccgccg 55136
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 cgccgccgccggacggcgtcgccgg 144 ||||||||||||||| ||||||||| Sbjct: 13722 cgccgccgccggacgccgtcgccgg 13698
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 cgccgccgccggacggcgtcgccgg 144 ||||||||||||||| ||||||||| Sbjct: 59584 cgccgccgccggacgccgtcgccgg 59560
>gb|AF226416.1|AF226416 Neisseria meningitidis strain SWZ107 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226411.1|AF226411 Neisseria meningitidis strain NGF26 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226409.1|AF226409 Neisseria meningitidis strain NGE28 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226408.1|AF226408 Neisseria meningitidis strain NG6/88 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226407.1|AF226407 Neisseria meningitidis strain NG3/88 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226406.1|AF226406 Neisseria meningitidis strain MC58 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226405.1|AF226405 Neisseria meningitidis strain H44/76 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226401.1|AF226401 Neisseria meningitidis strain BZ83 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226400.1|AF226400 Neisseria meningitidis strain BZ232 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226399.1|AF226399 Neisseria meningitidis strain BZ198 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226398.1|AF226398 Neisseria meningitidis strain BZ169 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226397.1|AF226397 Neisseria meningitidis strain BZ147 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226391.1|AF226391 Neisseria meningitidis strain 528 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226390.1|AF226390 Neisseria meningitidis strain 2996 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>gb|AF226387.1|AF226387 Neisseria meningitidis strain 1000 outer membrane lipoprotein GNA33 (gna33) gene, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tcggcggcggcggggccgtct 181 ||||||||||||||||||||| Sbjct: 161 tcggcggcggcggggccgtct 181
>dbj|AK119169.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G01, full insert sequence Length = 1299 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 501 gcaggcttgcagcgctgctgc 521 ||||||||||||||||||||| Sbjct: 1040 gcaggcttgcagcgctgctgc 1060
>dbj|AK102397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092H08, full insert sequence Length = 857 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 162 cggcggcggcggggccgtctcctccttcc 190 |||||||||||| | |||||||||||||| Sbjct: 36 cggcggcggcggcggcgtctcctccttcc 8
>dbj|AK062161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B02, full insert sequence Length = 981 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 162 cggcggcggcggggccgtctcctccttcc 190 |||||||||||| | |||||||||||||| Sbjct: 47 cggcggcggcggcggcgtctcctccttcc 19
>dbj|AK061670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G02, full insert sequence Length = 1299 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 501 gcaggcttgcagcgctgctgc 521 ||||||||||||||||||||| Sbjct: 1040 gcaggcttgcagcgctgctgc 1060
>gb|AY109110.1| Zea mays PCO118045 mRNA sequence Length = 790 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 49 cctcccctcgccgccgccgga 69
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgcctcccctcgccgccgccg 130 ||||||||||||||||||||| Sbjct: 12899301 cgcctcccctcgccgccgccg 12899321
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 cgccgccgccggacggcgtcgccgg 144 ||||||||||||||| ||||||||| Sbjct: 3691960 cgccgccgccggacgccgtcgccgg 3691936
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 8835390 cctcccctcgccgccgccgga 8835370 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtgcggctcggcggcggcgg 173 |||||||||||||||||||| Sbjct: 25575532 gtgcggctcggcggcggcgg 25575513
>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151176 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 24136 cctcccctcgccgccgccgga 24116
>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 195500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 cctcccctcgccgccgccgga 132 ||||||||||||||||||||| Sbjct: 6662 cctcccctcgccgccgccgga 6682
>emb|AL596123.32| Mouse DNA sequence from clone RP23-94N18 on chromosome 11, complete sequence Length = 165196 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ggcgggagctcggccggcggctacg 249 ||||||||||||||||| ||||||| Sbjct: 140074 ggcgggagctcggccgggggctacg 140098
>dbj|AP003552.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2030F10, complete sequence Length = 165129 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 gcctcccctcgccgccgccgg 131 ||||||||||||||||||||| Sbjct: 95590 gcctcccctcgccgccgccgg 95570
>ref|XM_472378.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2970 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgcctcccctcgccgccgcc 129 |||||||||||||||||||| Sbjct: 186 cgcctcccctcgccgccgcc 205
>ref|XM_465206.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gcggctcggcggcggcgggg 175 |||||||||||||||||||| Sbjct: 186 gcggctcggcggcggcgggg 205
>ref|XM_464379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1557 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcctcccctcgccgccgccg 130 |||||||||||||||||||| Sbjct: 118 gcctcccctcgccgccgccg 99
>ref|NM_190653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1227 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 ctcccctcgccgccgccggacggcgtcgccgg 144 |||||| |||||||||||| || ||||||||| Sbjct: 191 ctccccgcgccgccgccggtcgccgtcgccgg 160
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 ccacgcctcccctcgccgccgccg 130 ||||||||||| |||||||||||| Sbjct: 78673 ccacgcctcccgtcgccgccgccg 78696
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cagcagcgccgcacccacca 105 |||||||||||||||||||| Sbjct: 162677 cagcagcgccgcacccacca 162696
>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence Length = 152417 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 72280 gccgccgccggacgccgtcgccgg 72257
>ref|XM_850427.1| PREDICTED: Canis familiaris hypothetical protein LOC612701 (LOC612701), mRNA Length = 618 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ctcccctcgccgccgccggacggc 136 ||||||| |||||||||||||||| Sbjct: 457 ctcccctggccgccgccggacggc 434
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 cgcccgtccgcgagggcgcg 350 |||||||||||||||||||| Sbjct: 2073907 cgcccgtccgcgagggcgcg 2073926
>gb|AF271897.2| Homo sapiens chromosome 8 clone XX-36G5 map 8p23, complete sequence Length = 63739 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 caaccacgcctcccctcgcc 123 |||||||||||||||||||| Sbjct: 7513 caaccacgcctcccctcgcc 7494
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 7641 gccgccgccggacgccgtcgccgg 7618
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgcctcccctcgccgccgcc 129 |||||||||||||||||||| Sbjct: 81344 cgcctcccctcgccgccgcc 81363
>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04, complete sequence Length = 164567 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 cctcgccgccgccggacggcgtcgccgg 144 |||||||||||||||| |||||||||| Sbjct: 66554 cctcgccgccgccggagcgcgtcgccgg 66581
>gb|AE005819.1| Caulobacter crescentus CB15 section 145 of 359 of the complete genome Length = 10591 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ggggcggcgtggcgcgggcc 214 |||||||||||||||||||| Sbjct: 1571 ggggcggcgtggcgcgggcc 1552
>gb|AY740398.1|AY740398S1 Aegilops tauschii starch branching enzyme IIb (SBE II-DB1) gene, exons 1 through 16 Length = 14896 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ctcccctcgccgccgccgga 132 |||||||||||||||||||| Sbjct: 8373 ctcccctcgccgccgccgga 8392
>gb|AC069185.7| Homo sapiens chromosome 8, clone RP11-297N6, complete sequence Length = 169079 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 caaccacgcctcccctcgcc 123 |||||||||||||||||||| Sbjct: 81406 caaccacgcctcccctcgcc 81387
>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence Length = 175749 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 caaccacgcctcccctcgcc 123 |||||||||||||||||||| Sbjct: 25026 caaccacgcctcccctcgcc 25007
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcccctcgccgccgccggac 133 |||||||||||||||||||| Sbjct: 4097505 tcccctcgccgccgccggac 4097524
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 7832445 gccgccgccggacgccgtcgccgg 7832468
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcctcccctcgccgccgccg 130 |||||||||||||||||||| Sbjct: 4826528 gcctcccctcgccgccgccg 4826509
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 ctcccctcgccgccgccggacggcgtcgccgg 144 |||||| |||||||||||| || ||||||||| Sbjct: 36778502 ctccccgcgccgccgccggtcgccgtcgccgg 36778533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgg 131 |||||||||||||||||||| Sbjct: 24281337 cctcccctcgccgccgccgg 24281318
>gb|AC092291.3| Homo sapiens chromosome 16 clone CTD-2502C11, complete sequence Length = 194551 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gagggcacgtggagtggagc 399 |||||||||||||||||||| Sbjct: 127053 gagggcacgtggagtggagc 127034
>gb|AC009167.9| Homo sapiens chromosome 16 clone RP11-82O18, complete sequence Length = 193633 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gagggcacgtggagtggagc 399 |||||||||||||||||||| Sbjct: 188244 gagggcacgtggagtggagc 188263
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cgccgccgccggacggcgtc 139 |||||||||||||||||||| Sbjct: 1329064 cgccgccgccggacggcgtc 1329083
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 ctcccctcgccgccgccggacggcgtcgccgg 144 |||||| |||||||||||| || ||||||||| Sbjct: 104817 ctccccgcgccgccgccggtcgccgtcgccgg 104848
>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1372_D12 Length = 179898 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ctcccctcgccgccgccgga 132 |||||||||||||||||||| Sbjct: 103700 ctcccctcgccgccgccgga 103681
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcctcccctcgccgccgccg 130 |||||||||||||||||||| Sbjct: 107118 gcctcccctcgccgccgccg 107099
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcctcccctcgccgccgccg 130 |||||||||||||||||||| Sbjct: 68687 gcctcccctcgccgccgccg 68668
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgg 131 |||||||||||||||||||| Sbjct: 105901 cctcccctcgccgccgccgg 105882
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctcccctcgccgccgccgg 131 |||||||||||||||||||| Sbjct: 27241 cctcccctcgccgccgccgg 27222
>gb|AC121359.8| Mus musculus chromosome 15, clone RP23-138I21, complete sequence Length = 194871 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 ggagtggagcgggatggggcatgg 413 ||||||||| |||||||||||||| Sbjct: 59602 ggagtggagggggatggggcatgg 59579
>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0090H20 Length = 132628 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 63732 gccgccgccggacgccgtcgccgg 63755
>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0038P10 Length = 148527 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gccgccgccggacggcgtcgccgg 144 |||||||||||||| ||||||||| Sbjct: 22336 gccgccgccggacgccgtcgccgg 22359
>dbj|AK120071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013005I06, full insert sequence Length = 3289 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgcctcccctcgccgccgcc 129 |||||||||||||||||||| Sbjct: 213 cgcctcccctcgccgccgcc 232
>dbj|AK071862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123J20, full insert sequence Length = 1162 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 ccacgcctcccctcgccgccgccg 130 ||||||||||| |||||||||||| Sbjct: 22 ccacgcctcccgtcgccgccgccg 45
>dbj|AK066561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073D14, full insert sequence Length = 2396 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctcccctcgccgccgccgg 131 |||||||||||||||||||| Sbjct: 82 cctcccctcgccgccgccgg 101
>gb|AC119264.8| Mus musculus chromosome 15, clone RP24-289J12, complete sequence Length = 163578 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 ggagtggagcgggatggggcatgg 413 ||||||||| |||||||||||||| Sbjct: 138165 ggagtggagggggatggggcatgg 138142
>dbj|AK062906.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F10, full insert sequence Length = 756 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctcccctcgccgccgccgg 131 |||||||||||||||||||| Sbjct: 75 cctcccctcgccgccgccgg 94
>gb|AY104247.1| Zea mays PCO133106 mRNA sequence Length = 1500 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 accacgcctcccctcgccgccgcc 129 ||||| |||||||||||||||||| Sbjct: 139 accactcctcccctcgccgccgcc 162
>emb|AL079302.7|CNS00M8S Human chromosome 14 DNA sequence BAC R-1089B7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 204230 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 gtgcaggcttgcagcgctgc 518 |||||||||||||||||||| Sbjct: 87324 gtgcaggcttgcagcgctgc 87305
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ccgtgcggctcggcggcggc 171 |||||||||||||||||||| Sbjct: 2772554 ccgtgcggctcggcggcggc 2772573
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtgcggctcggcggcggcgg 173 |||||||||||||||||||| Sbjct: 14594 gtgcggctcggcggcggcgg 14575
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gtgcggctcggcggcggcgg 173 |||||||||||||||||||| Sbjct: 26362 gtgcggctcggcggcggcgg 26381
>emb|AJ867816.2| Uncultured nematode partial 18S rRNA gene, isolate DGGE band Env1 Length = 399 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 gcgtcgccgggcaaagcccgtgcg 158 |||||||||||||||| ||||||| Sbjct: 259 gcgtcgccgggcaaagaccgtgcg 236 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,127,089 Number of Sequences: 3902068 Number of extensions: 4127089 Number of successful extensions: 101889 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96325 Number of HSP's gapped (non-prelim): 5564 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
